BAC Information

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BAC

Clone NameB6Ng01-093N02
Chromosome5 (Build37)
Map Location 72,553,052 - 72,554,090
singlet/doubletsinglet
Overlap geneCommd8
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545
Downstream geneAtp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N02.bB6Ng01-093N02.g
ACCDH905198DH905199
length1,0391,121
definitionDH905198|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N02, 5' end.DH905199|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtcaccaagaagctgttttgaaatgtttaaagagtaggagaa
atgagatcaagcaggccctgttgggggaaatagttgatatttcttgtgcg
cagctgcaggattttgattggcagttaaaggtaagagtctagttatttat
atgtttttgtgtgtaatatttaagtttacttattcttttaaagtaaacat
gcctaaaattggttatgttgagactacagtgttccaaggtaatagcaaac
ctcatgtaaataattggttttgtgttaacttggacataagagcactgtaa
gcagccagaccatgtgtggtgtcattgtactgacaatgaattttcccaca
cctatcagtcagaagtggagaagtgtgtatttagtgtataaccttggtga
gggtcttatagatgccatagcgctctcaaaattgataaatgtgattttac
ttctatgaggaaagtatatgtaataaagtaacagttttaaaaacattggg
caaagagggtagtcctgagtagagctgagaaagagcaatttcagaaccgt
cttttgttctttaaggtaccatacgagtagacaggttcaggtccattctg
gttcctgatcctggcatggtcttagatccagacagtgccgtatgttgttt
tggtgaattaagaggacaaaagatgggaaagtgggacagtgaggtaggct
cagaactcggtaagtatccacttgttgtctcagctgaggaaatggttctg
tggttctggttgaggctcagctgtgttaaggattgtttatttacatgctt
tatcatattgacacaaaccagaagtatagtaagcatgcaatacagccaaa
gcttgaaaacattacactgaaggtccaaatgaagaaaggcaagttaatca
gtgatagattaaataagaggttcatttagttcacatttaacattgaagta
agcatggatgactggggacagtgctcacagcagcaatttatgaaggatat
gtatttgttttcgtttatcaaatgccccttaaactgaag
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctccctttttcatttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttccttttttttctag
agctttagatgtgttgtcaagctgctagtatgtgctctctccgttttttc
ctgaagggactcatagctatgagtttccttctagaaatgctttcattggg
gtccaaaagtttgggacgtttgctcattttcattaaactctaaaaagcct
ttagttcttctttattcctccctgacaaaggttacattgaagaaaaggtg
gatacagttccctgtgatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72553052_72554090
seq2: B6Ng01-093N02.b_48_1086 (reverse)

seq1  CATCAGTTAAGGGGCCATTTGATAAACGAAAGCAACTACATGTCCTTCAT  50
      | |||||| | ||| |||||||||||||||| ||| ||||| ||||||||
seq2  CTTCAGTTTAAGGGGCATTTGATAAACGAAAACAAATACATATCCTTCAT  50

seq1  AAA-TGCTGCTGTGAGCACCTGTCCCCAGTCATCCATGCTTACTTCAATG  99
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATTGCTGCTGTGAGCA-CTGTCCCCAGTCATCCATGCTTACTTCAATG  99

seq1  TTAAATGTGTACTTAAATGAAACCTCTTATTTAATCTATCACTGATTAAC  149
      ||||||||| || |||||| ||||||||||||||||||||||||||||||
seq2  TTAAATGTGAAC-TAAATG-AACCTCTTATTTAATCTATCACTGATTAAC  147

seq1  TTGCC-TTCTTCATTTGGACCTTCAGTGTAATGTTTTCAAGCTTTGGCTG  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCTTCATTTGGACCTTCAGTGTAATGTTTTCAAGCTTTGGCTG  197

seq1  TATTGCATGCTTACTATACTTCTGGTTTGTGTCAATATGAT-AAGCATGT  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTGCATGCTTACTATACTTCTGGTTTGTGTCAATATGATAAAGCATGT  247

seq1  TAATAAACAATCCTTAACACAGCTGAGCCTCAACCAGAACCACAGAACCA  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAATCCTTAACACAGCTGAGCCTCAACCAGAACCACAGAACCA  297

seq1  TTTCCTCAGCTGAGACAACAAGTGGATACTTACCGAGTTCTGAGCCTACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAGCTGAGACAACAAGTGGATACTTACCGAGTTCTGAGCCTACC  347

seq1  TCACTGTCCCACTTTCCCATCTTTTGTCCTCTTAATTCACCAAAACAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCCCACTTTCCCATCTTTTGTCCTCTTAATTCACCAAAACAACA  397

seq1  TACGGCACTGTCTGGATCTAAGACCATGCCAGGATCAGGAACCAGAATGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCACTGTCTGGATCTAAGACCATGCCAGGATCAGGAACCAGAATGG  447

seq1  ACCTGAACCTGTCTACTCGTATGGTACCTTAAAGAACAAAAGACGGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACCTGTCTACTCGTATGGTACCTTAAAGAACAAAAGACGGTTCT  497

seq1  GAAATTGCTCTTTCTCAGCTCTACTCAGGACTACCCTCTTTGCCCAATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCTCTTTCTCAGCTCTACTCAGGACTACCCTCTTTGCCCAATGT  547

seq1  TTTTAAAACTGTTACTTTATTACATATACTTTCCTCATAGAAGTAAAATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACTGTTACTTTATTACATATACTTTCCTCATAGAAGTAAAATC  597

seq1  ACATTTATCAATTTTGAGAGCGCTATGGCATCTATAAGACCCTCACCAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATCAATTTTGAGAGCGCTATGGCATCTATAAGACCCTCACCAAG  647

seq1  GTTATACACTAAATACACACTTCTCCACTTCTGACTGATAGGTGTGGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACACTAAATACACACTTCTCCACTTCTGACTGATAGGTGTGGGAA  697

seq1  AATTCATTGTCAGTACAATGACACCACACATGGTCTGGCTGCTTACAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTGTCAGTACAATGACACCACACATGGTCTGGCTGCTTACAGTG  747

seq1  CTCTTATGTCCAAGTTAACACAAAACCAATTATTTACATGAGGTTTGCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGTCCAAGTTAACACAAAACCAATTATTTACATGAGGTTTGCTA  797

seq1  TTACCTTGGAACACTGTAGTCTCAACATAACCAATTTTAGGCATGTTTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGGAACACTGTAGTCTCAACATAACCAATTTTAGGCATGTTTAC  847

seq1  TTTAAAAGAATAAGTAAACTTAAATATTACACACAAAAACATATAAATAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAATAAGTAAACTTAAATATTACACACAAAAACATATAAATAA  897

seq1  CTAGACTCTTACCTTTAACTGCCAATCAAAATCCTGCAGCTGCGCACAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCTTACCTTTAACTGCCAATCAAAATCCTGCAGCTGCGCACAAG  947

seq1  AAATATCAACTATTTCCCCCAACAGGGCCTGCTTGATCTCATTTCTCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAACTATTTCCCCCAACAGGGCCTGCTTGATCTCATTTCTCCTA  997

seq1  CTCTTTAAACATTTCAAAACAGCTTCTTGGTGACATGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAACATTTCAAAACAGCTTCTTGGTGACATGAATTC  1039