BAC Information

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BAC

Clone NameB6Ng01-094M06
Chromosome5 (Build37)
Map Location 62,813,119 - 62,911,818
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream geneCentd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094M06.bB6Ng01-094M06.g
ACCDH905896DH905897
length1,1851,071
definitionDH905896|Mus musculus domesticus DNA, BAC clone: B6Ng01-094M06, 5' end.DH905897|Mus musculus domesticus DNA, BAC clone: B6Ng01-094M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,813,119 - 62,814,324)(62,910,730 - 62,911,818)
sequence
gaattcctttctcccataagtcatttttgccaaagtattttatcaaaaac
agaaagaaaagtagcaagcaaacaaacaatgaatatatgttctttctgta
atcagatcccagatagacaggccaaatttgtaaggacacaggctccagaa
tcgagtaaagacagctaattcaatgattatggacatagtggttacatcta
atggttaatctgtaggaactcatcataacagactggtagcaattaattgg
aaagatatggaatagagtgcttgaggctgacttagaagtgatttatgtga
gcccagcactgtatacaccaagcaacggtgtttcacaactttaataatca
ctcaggagatggaagtaggtatattggaagttcaatgtcgttctcagctg
tgtaatcaatttgagaccagcttggactagagaccctgtctgaaaaaaaa
aaaaaagacaaagaaagcaagcaagaaagaacgaaagaaataaacacaca
caaacaacttattataacatacaaggtacatacttgctcctctggagatt
atcaccatgtgattattctctgctgtcatttgttgtagatgttgttatta
tagatttttcatttaagctcaacttaggacgatgtcattaggtaggggac
agaatctctctatgtgaaattttacaagcctcatcaactctttgtttttg
tgtgataatatacctcttacttctacaggctccttgagtaccaaggatta
tgagtgactgtatatgagaactgctaattataatgtctaagcagacaatt
cctttacaatttgtgacttttaaataaatattaaaatgcaataaattatt
gctaaaaataaacatcaactctatcatcttttcacctaaacatcatgtct
ttgactggaggcctttctcttgttactcaactgtctttaatttcactcca
aaaatacaaaaagcaaaatcaaatacatatttccccatgtccaccagttt
actaggactttgatatcacatccttagtgctgttgttatatgtgatccaa
gatccagggttctcagcagatgcatctgcaatagctgggtcacttcaccc
tgatgaatcacttataccctcttagatacagagataaaacagcatgcctc
tttaatgctatcttggattcttgacatattccagt
gaattcctcatttttcagttcctcaattccctgatttttcttacttcttc
ctcgcttgtttttattctccctctacctcattctatgtcttcatattctc
ctgcttctctcatttctgctttccctgtgcagggaatggcccctttccct
acattcctcgtcttcactccctgccgtccttcctttttccttattatctt
ctttctcctttttcttattcttgacagagttctacagttttaaagtttag
aattcagtgatcaattaaaactaaaaaacaattaggcattagttagcatt
gattactgtgcagatgagcctgatatatgtgctggatgtcattgactaat
gggcctggcttgttttctttcctcactctatccacagtaagaacagagga
aatgtatctttaactacaagagaatcacataagcagaaaacaatgaaatg
gccaagtgtagataaacactgcacatttttaaatattacattttcaaaaa
cagcgggagagatgctgtaaatactgaaaagtcaaatggtaatataaacc
aagaaaatgtaaggcattaggaagaagtgtgaagacactgcaggctgtga
atatctattcttgaaacagcagttccgaaactttggttagtacagtattt
aatgagacactattacttagaaacaagtagttatttaaatataatcaata
caatttgatgagaaggatttcaaagaaaatatgctttcttctatttaaaa
tgtgtgtacttctaagaagaccaacagtgtcaagtaacctggaccctggt
ggctcccaaaggagaccaaagagcttacctgatctaaacctaggccccct
gcacgcatgtaccagatgtatcatttggtcttcatgctggtccccaacaa
ctggaagagggtgtccctgaaactgttgtctccctgtgatcctgtttccc
tacttgagcgcctgtctgacctcagtagagatgtgctagttctgcagtga
ctgatttgcaggtgggtgtacccagagggcttcttcttatcagagaagaa
agaagggatatggggaggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_62813119_62814324
seq2: B6Ng01-094M06.b_43_1227

seq1  GAATTCCTTTCTCCCATAAGTCATTTTTGCCAAAGTATTTTATCAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTCCCATAAGTCATTTTTGCCAAAGTATTTTATCAAAAAC  50

seq1  AGAAAGAAAAGTAGCAAGCAAACAAACAATGAATATATGTTCTTTCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAGTAGCAAGCAAACAAACAATGAATATATGTTCTTTCTGTA  100

seq1  ATCAGATCCCAGATAGACAGGCCAAATTTGTAAGGACACAGGCTCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCCAGATAGACAGGCCAAATTTGTAAGGACACAGGCTCCAGAA  150

seq1  TCGAGTAAAGACAGCTAATTCAATGATTATGGACATAGTGGTTACATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTAAAGACAGCTAATTCAATGATTATGGACATAGTGGTTACATCTA  200

seq1  ATGGTTAATCTGTAGGAACTCATCATAACAGACTGGTAGCAATTAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATCTGTAGGAACTCATCATAACAGACTGGTAGCAATTAATTGG  250

seq1  AAAGATATGGAATAGAGTGCTTGAGGCTGACTTAGAAGTGATTTATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGGAATAGAGTGCTTGAGGCTGACTTAGAAGTGATTTATGTGA  300

seq1  GCCCAGCACTGTATACACCAAGCAACGGTGTTTCACAACTTTAATAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCACTGTATACACCAAGCAACGGTGTTTCACAACTTTAATAATCA  350

seq1  CTCAGGAGATGGAAGTAGGTATATTGGAAGTTCAATGTCGTTCTCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGATGGAAGTAGGTATATTGGAAGTTCAATGTCGTTCTCAGCTG  400

seq1  TGTAATCAATTTGAGACCAGCTTGGACTAGAGACCCTGTCTGAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAATTTGAGACCAGCTTGGACTAGAGACCCTGTCTGAAAAAAAA  450

seq1  AAAAAAGACAAAGAAAGCAAGCAAGAAAGAACGAAAGAAATAAACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACAAAGAAAGCAAGCAAGAAAGAACGAAAGAAATAAACACACA  500

seq1  CAAACAACTTATTATAACATACAAGGTACATACTTGCTCCTCTGGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTTATTATAACATACAAGGTACATACTTGCTCCTCTGGAGATT  550

seq1  ATCACCATGTGATTATTCTCTGCTGTCATTTGTTGTAGATGTTGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGTGATTATTCTCTGCTGTCATTTGTTGTAGATGTTGTTATTA  600

seq1  TAGATTTTTCATTTAAGCTCAACTTAGGACGATGTCATTAGGTAGGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTCATTTAAGCTCAACTTAGGACGATGTCATTAGGTAGGGGAC  650

seq1  AGAATCTCTCTATGTGAAATTTTACAAGCCTCATCAACTCTTTGTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCTATGTGAAATTTTACAAGCCTCATCAACTCTTTGTTTTTG  700

seq1  TGTGATAATATACCTCTTACTTCTACAGGCTCCTTGAGTACCAAGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAATATACCTCTTACTTCTACAGGCTCCTTGAGTACCAAGGATTA  750

seq1  TGAGTGACTGTATATGAGAACTGCTAATTATAATGTCTAAGCAGACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACTGTATATGAGAACTGCTAATTATAATGTCTAAGCAGACAATT  800

seq1  CCTTTACAATTTGTGACTTTTAAATAAATATTAAAATGCAATAAATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAATTTGTGACTTTTAAATAAATATTAAAATGCAATAAATTATT  850

seq1  GCTAAAAAATAAACATCAACTCTATCATCTTTTCACCTAAACATCATGTC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCT-AAAAATAAACATCAACTCTATCATCTTTTCACCTAAACATCATGTC  899

seq1  TTTGACTGGAGGCCTTTCTCTTGTTACTCAACTGTCTTTAATTTCACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGGAGGCCTTTCTCTTGTTACTCAACTGTCTTTAATTTCACTCC  949

seq1  AAAAAATACAAAAAGCAAAATCAAATACATATTTCCCCCATGTCCACCAG  1000
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -AAAAATACAAAAAGCAAAATCAAATACATATTT-CCCCATGTCCACCAG  997

seq1  TTTACCTAGGACTTTGATATCAACATCCTTAGTGCTGTTGTTATAATGTG  1050
      |||| |||||||||||||||| |||||||||||||||||||||| |||||
seq2  TTTA-CTAGGACTTTGATATC-ACATCCTTAGTGCTGTTGTTAT-ATGTG  1044

seq1  AATCCAAAGATCCAGGGTTCTCAGCAAGATGCATCTGCAAATAGCTGGGT  1100
       |||| ||||||||||||||||||| |||||||||||| |||||||||| 
seq2  -ATCC-AAGATCCAGGGTTCTCAGC-AGATGCATCTGC-AATAGCTGGG-  1089

seq1  TCACTTCCACCCTGGATGAATTCACTTATACCCTCCTAGATTACAGAGTA  1150
      |||||| |||||| |||||| |||||||||||||| |||| |||||||  
seq2  TCACTT-CACCCT-GATGAA-TCACTTATACCCTCTTAGA-TACAGAGAT  1135

seq1  AAAACAGCCATGCCTCTTATAATGGCTATCTTTGGATTCATGACATTATC  1200
      ||||||| |||||||||| |||| |||||| |||||||| ||||| ||| 
seq2  AAAACAG-CATGCCTCTT-TAAT-GCTATC-TTGGATTCTTGACA-TAT-  1179

seq1  TCCAGT  1206
      ||||||
seq2  TCCAGT  1185

seq1: chr5_62910730_62911818
seq2: B6Ng01-094M06.g_66_1136 (reverse)

seq1  GCTCCTCCCCCATATCCCCTCTCTTTCTCCTCTGATAAGGAGAAGGCCCC  50
      | |||| |||||||||||   ||||||| |||||||||| |||||  |||
seq2  GGTCCT-CCCCATATCCC--TTCTTTCTTCTCTGATAAGAAGAAG--CCC  45

seq1  TCTGGGTACCAACCCACCCTGGCAAATCAAGTCACTGCAGAACTAGGCAC  100
      |||||||||  |||||||   ||||||| |||||||||||||||| ||||
seq2  TCTGGGTAC--ACCCACC--TGCAAATC-AGTCACTGCAGAACTA-GCAC  89

seq1  ATCTCCTACTGAGGTCAGACAAGGCGCCTCAAGTAGGGAAACAGGATCCA  150
      |||| ||||||||||||||| ||||| |||||||||||||||||||| ||
seq2  ATCT-CTACTGAGGTCAGAC-AGGCG-CTCAAGTAGGGAAACAGGAT-CA  135

seq1  CAGGGAGACAACAGTTTCAGGGACAACCCTCCTTCCAGTTGTTGGGGGAC  200
      |||||||||||||||||||||||| ||||| |||||||||||| ||||||
seq2  CAGGGAGACAACAGTTTCAGGGAC-ACCCT-CTTCCAGTTGTT-GGGGAC  182

seq1  CAGCATGAAGACCAAATGATACATCTGGTACATGCGTGCAGGGGGCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAAGACCAAATGATACATCTGGTACATGCGTGCAGGGGGCCTAG  232

seq1  GTTTAGATCAGGTAAGCTCTTTGGTCTCCTTTGGGAGCCACCAGGGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATCAGGTAAGCTCTTTGGTCTCCTTTGGGAGCCACCAGGGTCCA  282

seq1  GGTTACTTGACACTGTTGGTCTTCTTAGAAGTACACACATTTTAAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTTGACACTGTTGGTCTTCTTAGAAGTACACACATTTTAAATAGA  332

seq1  AGAAAGCATATTTTCTTTGAAATCCTTCTCATCAAATTGTATTGATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATATTTTCTTTGAAATCCTTCTCATCAAATTGTATTGATTATA  382

seq1  TTTAAATAACTACTTGTTTCTAAGTAATAGTGTCTCATTAAATACTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAACTACTTGTTTCTAAGTAATAGTGTCTCATTAAATACTGTAC  432

seq1  TAACCAAAGTTTCGGAACTGCTGTTTCAAGAATAGATATTCACAGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAGTTTCGGAACTGCTGTTTCAAGAATAGATATTCACAGCCTGC  482

seq1  AGTGTCTTCACACTTCTTCCTAATGCCTTACATTTTCTTGGTTTATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCACACTTCTTCCTAATGCCTTACATTTTCTTGGTTTATATTA  532

seq1  CCATTTGACTTTTCAGTATTTACAGCATCTCTCCCGCTGTTTTTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGACTTTTCAGTATTTACAGCATCTCTCCCGCTGTTTTTGAAAAT  582

seq1  GTAATATTTAAAAATGTGCAGTGTTTATCTACACTTGGCCATTTCATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTAAAAATGTGCAGTGTTTATCTACACTTGGCCATTTCATTGT  632

seq1  TTTCTGCTTATGTGATTCTCTTGTAGTTAAAGATACATTTCCTCTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTATGTGATTCTCTTGTAGTTAAAGATACATTTCCTCTGTTCT  682

seq1  TACTGTGGATAGAGTGAGGAAAGAAAACAAGCCAGGCCCATTAGTCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGATAGAGTGAGGAAAGAAAACAAGCCAGGCCCATTAGTCAATG  732

seq1  ACATCCAGCACATATATCAGGCTCATCTGCACAGTAATCAATGCTAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGCACATATATCAGGCTCATCTGCACAGTAATCAATGCTAACTA  782

seq1  ATGCCTAATTGTTTTTTAGTTTTAATTGATCACTGAATTCTAAACTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAATTGTTTTTTAGTTTTAATTGATCACTGAATTCTAAACTTTAA  832

seq1  AACTGTAGAACTCTGTCAAGAATAAGAAAAAGGAGAAAGAAGATAATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGAACTCTGTCAAGAATAAGAAAAAGGAGAAAGAAGATAATAAG  882

seq1  GAAAAAGGAAGGACGGCAGGGAGTGAAGACGAGGAATGTAGGGAAAGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGAAGGACGGCAGGGAGTGAAGACGAGGAATGTAGGGAAAGGGG  932

seq1  CCATTCCCTGCACAGGGAAAGCAGAAATGAGAGAAGCAGGAGAATATGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTGCACAGGGAAAGCAGAAATGAGAGAAGCAGGAGAATATGAA  982

seq1  GACATAGAATGAGGTAGAGGGAGAATAAAAACAAGCGAGGAAGAAGTAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAATGAGGTAGAGGGAGAATAAAAACAAGCGAGGAAGAAGTAAG  1032

seq1  AAAAATCAGGGAATTGAGGAACTGAAAAATGAGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGGGAATTGAGGAACTGAAAAATGAGGAATTC  1071