BAC Information

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BAC

Clone NameB6Ng01-094P17
Chromosome5 (Build37)
Map Location 80,254,991 - 80,398,946
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094P17.bB6Ng01-094P17.g
ACCDH906046DH906047
length1,1491,004
definitionDH906046|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P17, 5' end.DH906047|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,398,221 - 80,398,946)(80,254,991 - 80,256,013)
sequence
gaattcatctatattgctgtgtatatccatgatagttcaatgtcatttat
ccatagctgtcaactctttgattgtatcacaatttatcttactgtctagg
gactttctaacagacttaaacttacagtattctgaacactggtttttgta
caccctatgggcctgtcattgttgagatatttgtcatatatttgctagga
gaatagtgtatcttacatgcgttctcgcgaccagccaggaagaacgcagc
aaaccggaatcttctgcggcaaagctttattgcttacatcttcaggagcc
agagagcaagagagcaagagagcaagagcaagagctctattgcttacatc
tttaggagccagagcacaagagcgcaagagctctattgcttacatcttta
ggagcaagagagcaagagtgcaagagctctattgcttacatcttcaggag
ccagagagcaagagtgcaagagagagaatggcaaaacaccatcccttttt
aaggagaattatcctccgcctaggatgtgtcactccctgattggctgcag
cccatcggccgagttgtcgatacggggaaggcagagcacatggagtgaag
aactacccttggcacatgcgcagattatttgtttaccacttagaacacag
gatgtcagcgccatcttgcaacggcgaatgtgagggcggcttcccacaag
tgtatgctaaataatttacatatgaccatgtttttccattcttagctatt
tatatagatgggttttttaaatatataatctcaaattggtgttttgttca
tgccgttttaagtaggaactccatactacaaagtaaatttagtttactgc
ttaaaacatcctgattgattaaatatctatacaagtatttaatttgctgt
cctgtttgagctgtttgtttaagctatgcagtagatttatggaatcagca
cagatacttctgttacatgagttgtctataattctatacgtgtcaatgcc
tttgcatttttcagagtgacagtaaattctgatagtataagctagtgaat
atgagtatctttcactctgggatgcagccagagtacagcctccaatcaac
ttataatcatgaagacaactaatacaaaccattcttgttactgtactat
gaattccaacatcaatcccttaaaaactgttaggcaagagtagctgaaga
tgttgtacatactgaagaaacttctagaacatgaacagtaagcatataaa
ctactgtgttcatttcatctgtgaaattctaaattcataagtatctcaca
atacataacccattatggtaactgcatgtacatttagtgaattatttggg
tatatttttccatgtagtcatataatgcagagaacatagaaagccattgg
atatggactatccaatataaatatccactatgaaatatttgcaagaaagc
agatcttgaaagccttcttccctctcacactttcagttgtctatggcaat
gtgaattctcaattgttaagcagacaattatctctctttcctttcattga
aaatagattttattcttacattatatatcataattctggttttctttccc
tgtattatccccagctgcccacttctcccctataattctgatctactccc
tttctgtatctcatcagaaaaaaaaaatctaaaagactaatattgtagcc
accagcagccatgtagatttacctggatggaaagctggggatggaataga
atgagcagacaagagaaataaagtcaagaaaaattctctgatcaaggctc
aaattttatgtacatctctgaatatatatgggaaaaccctatgattgatc
cctttgtttaggctgcattctgttgcttatttcagctggattgaattgca
aagtaagctcagtagtggtcaaggatcagtaggaaatgcaaatgtggcaa
ggtcaggcacaaagtcagttgtaaaacctttgggaggtttgtttaaccaa
tatgatcaaacaaatcttattggaattagaccaacaaaggaggagaaaga
tcctaaactagcacagaaataaatccactctttgcatactcaggatctca
caaacaacaaacaacacatatacacaaacattaaactggaaaccatgata
tgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80398221_80398946
seq2: B6Ng01-094P17.b_490_1196 (reverse)

seq1  ATAGTACAGATTATAACATAGGAATGGTGTTTGGTATTAGTTGTCTTCAT  50
      |||||||||    ||||  | ||||||   || |||||||||||||||||
seq2  ATAGTACAG----TAAC--AAGAATGG---TTTGTATTAGTTGTCTTCAT  41

seq1  GATTGTATAGTTGATTGGGAGCTGTACCTCTTGCTGCATTCCAGAGTGAA  100
      |||| || ||||||||||  |||||| |||| ||||||| ||||||||||
seq2  GATTATA-AGTTGATTGGAGGCTGTA-CTCTGGCTGCATCCCAGAGTGAA  89

seq1  AGATACTCATA-TCACTAGCCTTTATAACTATCAGAATTTTACTGTCACT  149
      ||||||||||| ||||||||  |||| |||||||||| ||||||||||||
seq2  AGATACTCATATTCACTAGC--TTAT-ACTATCAGAA-TTTACTGTCACT  135

seq1  CTGAAAAATGCAAAGGCAATGACACGTTATAAGAATTATAGACAACTCAT  199
      |||||||||||||||||| ||||||| ||| |||||||||||||||||||
seq2  CTGAAAAATGCAAAGGCATTGACACG-TAT-AGAATTATAGACAACTCAT  183

seq1  GTAACAGAAGTATCTGTGCTGATTCCATAAATCCTACTGCATAGCTTAAA  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTAACAGAAGTATCTGTGCTGATTCCATAAAT-CTACTGCATAGCTTAAA  232

seq1  CAAAACAGCCTCAAACAGGACAGCAAATTAAATACTTGTATAGATATTTA  299
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  C-AAACAG-CTCAAACAGGACAGCAAATTAAATACTTGTATAGATATTTA  280

seq1  ATCAATCAGGATGTTTTAAGCAGTAAACTAAATTTACTTTGTAGTATGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAGGATGTTTTAAGCAGTAAACTAAATTTACTTTGTAGTATGGA  330

seq1  GTTCCTACTTAAAACGGCATGAACAAAACACCAATTTGAGATTATATATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACTTAAAACGGCATGAACAAAACACCAATTTGAGATTATATATT  380

seq1  TAAAAAACCCATCTATATAAATAGCTAAGAATGGAAAAACATGGTCATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACCCATCTATATAAATAGCTAAGAATGGAAAAACATGGTCATAT  430

seq1  GTAAATTATTTAGCATACACTTGTGGGAAGCCGCCCTCACATTCGCCGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTATTTAGCATACACTTGTGGGAAGCCGCCCTCACATTCGCCGTT  480

seq1  GCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  530

seq1  GCATGTGCCAAGGGTAGTTCTTCACTCCATGTGCTCTGCCTTCCCCGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCAAGGGTAGTTCTTCACTCCATGTGCTCTGCCTTCCCCGTAT  580

seq1  CGACAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACATCCTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACATCCTAG  630

seq1  GCGGAGGATAATTCTCCTTAAAAAGGGATGGTGTTTTGCCATTCTCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGATAATTCTCCTTAAAAAGGGATGGTGTTTTGCCATTCTCTCTC  680

seq1  TTGCACTCTTGCTCTCTGGCTCCTGAA  726
      |||||||||||||||||||||||||||
seq2  TTGCACTCTTGCTCTCTGGCTCCTGAA  707

seq1: chr5_80254991_80256013
seq2: B6Ng01-094P17.g_69_1072

seq1  GAATTCCAACATCAATCCCTTAAAAACTGTTAGGCAAGAGTAGCTGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACATCAATCCCTTAAAAACTGTTAGGCAAGAGTAGCTGAAGA  50

seq1  TGTTGTACATACTGAAGAAACTTCTAGAACATGAACAGTAAGCATATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACATACTGAAGAAACTTCTAGAACATGAACAGTAAGCATATAAA  100

seq1  CTACTGTGTTCATTTCATCTGTGAAATTCTAAATTCATAAGTATCTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTTCATTTCATCTGTGAAATTCTAAATTCATAAGTATCTCACA  150

seq1  ATACATAACCCATTATGGTAACTGCATGTACATTTAGTGAATTATTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAACCCATTATGGTAACTGCATGTACATTTAGTGAATTATTTGGG  200

seq1  TATATTTTTCCATGTAGTCATATAATGCAGAGAACATAGAAAGCCATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCCATGTAGTCATATAATGCAGAGAACATAGAAAGCCATTGG  250

seq1  ATATGGACTATCCAATATAAATATCCACTATGAAATATTTGCAAGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGACTATCCAATATAAATATCCACTATGAAATATTTGCAAGAAAGC  300

seq1  AGATCTTGAAAGCCTTCTTCCCTCTCACACTTTCAGTTGTCTATGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGAAAGCCTTCTTCCCTCTCACACTTTCAGTTGTCTATGGCAAT  350

seq1  GTGAATTCTCAATTGTTAAGCAGACAATTATCTCTCTTTCCTTTCATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCTCAATTGTTAAGCAGACAATTATCTCTCTTTCCTTTCATTGA  400

seq1  AAATAGATTTTATTCTTACATTATATATCATAATTCTGGTTTTCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTTTATTCTTACATTATATATCATAATTCTGGTTTTCTTTCCC  450

seq1  TGTATTATCCCCAGCTGCCCACTTCTCCCCTATAATTCTGATCTACTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATCCCCAGCTGCCCACTTCTCCCCTATAATTCTGATCTACTCCC  500

seq1  TTTCTGTATCTCATCAGAAAAAAAAAATCTAAAAGACTAATATTGTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATCTCATCAGAAAAAAAAAATCTAAAAGACTAATATTGTAGCC  550

seq1  ACCAGCAGCCATGTAGATTTACCTGGATGGAAAGCTGGGGATGGAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGCCATGTAGATTTACCTGGATGGAAAGCTGGGGATGGAATAGA  600

seq1  ATGAGCAGACAAGAGAAATAAAGTCAAGAAAAATTCTCTGATCAAGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGACAAGAGAAATAAAGTCAAGAAAAATTCTCTGATCAAGGCTC  650

seq1  AAATTTTATGTACATCTCTGAATATATATGGGAAAACCCTATGATTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATGTACATCTCTGAATATATATGGGAAAACCCTATGATTGATC  700

seq1  CCTTTGTTTAGGCTGCATTCTGTTGCTTATTTCAGCTGGATTGAATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTAGGCTGCATTCTGTTGCTTATTTCAGCTGGATTGAATTGCA  750

seq1  AAGTAAGCTCAGTAGGTGGTCAAGGATCAGTAGGAAATGCAAATGTGGCA  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCTCAGTA-GTGGTCAAGGATCAGTAGGAAATGCAAATGTGGCA  799

seq1  AGGTCAGGCACAAAGTCAGGTTGTAAAACCTTTGGGAGGTTTGTTTAACC  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGTCAGGCACAAAGTCA-GTTGTAAAACCTTTGGGAGGTTTGTTTAACC  848

seq1  AATATGATCAAACAAAATCTTATTGGAATTAGACCAAACAAAGGAGGAAG  900
      ||||||||||||| ||||||||||||||||||||| ||||||||||||  
seq2  AATATGATCAAAC-AAATCTTATTGGAATTAGACC-AACAAAGGAGGA--  894

seq1  AAAAGATCCTAAAACTAGGCACAAGAAATAAATCCACTCTTTGCATACTC  950
       ||||||||| |||||| |||| |||||||||||||||||||||||||||
seq2  GAAAGATCCT-AAACTA-GCAC-AGAAATAAATCCACTCTTTGCATACTC  941

seq1  AGGAATCCCACAAAACAAACAAACAAACAACAATAATAACAACAAAACAT  1000
      ||| ||| ||||||       |||||||||||   || |||   ||||||
seq2  AGG-ATCTCACAAA------CAACAAACAACACATAT-ACA--CAAACAT  981

seq1  TAAACTGGAAACCATGATATGTA  1023
      |||||||||||||||||||||||
seq2  TAAACTGGAAACCATGATATGTA  1004