BAC Information

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BAC

Clone NameB6Ng01-095D05
Chromosome5 (Build37)
Map Location 30,731,667 - 30,898,895
singlet/doubletdoublet
Overlap geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3
Upstream geneEG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060
Downstream gene4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095D05.bB6Ng01-095D05.g
ACCDH906206DH906207
length1,151418
definitionDH906206|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D05, 5' end.DH906207|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,731,667 - 30,732,836)(30,898,472 - 30,898,895)
sequence
gaattcttccttatgcaaatgagacatcccaggaccctggctcagcccaa
tgatattcacttaccctgaagcctctacccacgctccaaaggtttaaata
gcccttattcctcttaattaaatgagcctctcaatgaacccagcctccag
agatgtttgtttctattggcgctaacccattgtggcctgtggtctccatc
acctccattgaccctgccccacattccctctcaaggccacctgtctgaac
acggggctgatcatgccattgtgggaaagggagcagggtaggaacaactg
ggacagaggaaaagggtggaaaaaaactggcgtgggctggagtctatatc
cttctggttttgtattccaggctgacccagaacttgaacatcccccacct
cctaagcgctgggttacaggctcccaccatcccatctgttttattgggtg
ctggggatcgaactcactgtcttgcatgttaggtgagcaccctacccact
gagcaacacctccagtgcggttgggctttggcttagcagagtgactggca
ggcatcaagagctgctaggagctattgaaagacggtaccaggggttttca
cagactagacagagcacagtgacttcagttttaaatgtcccctatgttcc
ctacccagttcagaccagtcaacagttcaggaatagcagtgataataatg
tttacagaaaacttggcattatgcaggaggctgaagtctttaagcatatt
gttttttttagcttttctaacagcccaggaagctggtgtctgcccagttt
catggacattgtagccacagctctgagaagtagaggtgaggcagagttct
gctggtggccgagtggacactgctgagcaaagcttccaagagctgcccct
gtaagcctgccgctccacagctggactgccttctcccagactgaggactt
tcagggttgggcttacagggccatcctggctgctcactgtcatctccctt
cagatcatctcctccaggatgggcagatcccgggaaacgtgaggcaagtt
actttagtcacctgacaactagctagagtgtccagaggaggaacctcact
gaaaaagatggggctgtagtagtcttgtgggcatttcttattgtgatcaa
t
aaggctattctgggtaatttggtcaccctgtttcaaaaccaaatataggg
cccgggaccttgtgcctcagcagagcactcgccttgcatgcatgaggccc
tacatgcaatccctgggttgagcaggcatcgggaggtcaacaaaaaacca
ggaagcaggaagccggctgtttcttaccaaatgaccagtctttgggtatc
ttggtctgggatttctctgacatcaaaactgtgagaaataaaagtgttgg
gcagccacactggtctgcgccatttttgtctgacaagtctggcacagatc
aagacaggcagaggccaggtaggaggagccaccttctcactggcatttag
ttctccagagatctcaggagtttgtgcacatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30731667_30732836
seq2: B6Ng01-095D05.b_44_1194

seq1  GAATTCTTCCTTATGCAAATGAGACATCCCAGGACCCTGGCTCAGCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTATGCAAATGAGACATCCCAGGACCCTGGCTCAGCCCAA  50

seq1  TGATATTCACTTACCCTGAAGCCTCTACCCACGCTCCAAAGGTTTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCACTTACCCTGAAGCCTCTACCCACGCTCCAAAGGTTTAAATA  100

seq1  GCCCTTATTCCTCTTAATTAAATGAGCCTCTCAATGAACCCAGCCTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTATTCCTCTTAATTAAATGAGCCTCTCAATGAACCCAGCCTCCAG  150

seq1  AGATGTTTGTTTCTATTGGCGCTAACCCATTGTGGCCTGTGGTCTCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTGTTTCTATTGGCGCTAACCCATTGTGGCCTGTGGTCTCCATC  200

seq1  ACCTCCATTGACCCTGCCCCACATTCCCTCTCAAGGCCACCTGTCTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATTGACCCTGCCCCACATTCCCTCTCAAGGCCACCTGTCTGAAC  250

seq1  ACGGGGCTGATCATGCCATTGTGGGAAAGGGAGCAGGGTAGGAACAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCTGATCATGCCATTGTGGGAAAGGGAGCAGGGTAGGAACAACTG  300

seq1  GGACAGAGGAAAAGGGTGGAAAAAAACTGGCGTGGGCTGGAGTCTATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGGAAAAGGGTGGAAAAAAACTGGCGTGGGCTGGAGTCTATATC  350

seq1  CTTCTGGTTTTGTATTCCAGGCTGACCCAGAACTTGAACATCCCCCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTTTGTATTCCAGGCTGACCCAGAACTTGAACATCCCCCACCT  400

seq1  CCTAAGCGCTGGGTTACAGGCTCCCACCATCCCATCTGTTTTATTGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCGCTGGGTTACAGGCTCCCACCATCCCATCTGTTTTATTGGGTG  450

seq1  CTGGGGATCGAACTCACTGTCTTGCATGTTAGGTGAGCACCCTACCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATCGAACTCACTGTCTTGCATGTTAGGTGAGCACCCTACCCACT  500

seq1  GAGCAACACCTCCAGTGCGGTTGGGCTTTGGCTTAGCAGAGTGACTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACACCTCCAGTGCGGTTGGGCTTTGGCTTAGCAGAGTGACTGGCA  550

seq1  GGCATCAAGAGCTGCTAGGAGCTATTGAAAGACGGTACCAGGGGTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAGAGCTGCTAGGAGCTATTGAAAGACGGTACCAGGGGTTTTCA  600

seq1  CAGACTAGACAGAGCACAGTGACTTCAGTTTTAAATGTCCCCTATGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGACAGAGCACAGTGACTTCAGTTTTAAATGTCCCCTATGTTCC  650

seq1  CTACCCAGTTCAGACCAGTCAACAGTTCAGGAATAGCAGTGATAATAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGTTCAGACCAGTCAACAGTTCAGGAATAGCAGTGATAATAATG  700

seq1  TTTACAGAAAACTTGGCATTATGCAGGAGGCTGAAGTCTTTAAGCATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAAACTTGGCATTATGCAGGAGGCTGAAGTCTTTAAGCATATT  750

seq1  GTTTTTTTTAGCTTTTCTAACAGCCCAGGAAGCTGGTGTCTGCCCAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTAGCTTTTCTAACAGCCCAGGAAGCTGGTGTCTGCCCAGTTT  800

seq1  CATGGACATTGTAGCCACAGCTCTGAGAAGTAGAGGTGAGGCAGAGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACATTGTAGCCACAGCTCTGAGAAGTAGAGGTGAGGCAGAGTTCT  850

seq1  GCTGGTGGCCGAGTGGACACTGCTGAGCAGAAGCTTCCAAGAGCTGCCCC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGGTGGCCGAGTGGACACTGCTGAGCA-AAGCTTCCAAGAGCTGCCCC  899

seq1  TGTAAGCCTGCCGCTCCACAGCTGGACTGCCTTCTCCCAGACTGAGGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCTGCCGCTCCACAGCTGGACTGCCTTCTCCCAGACTGAGGACT  949

seq1  TTCAGGGTTGGGCTTACAGGGCCATCCTGGCTGCTCACTGTCATCTCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTTGGGCTTACAGGGCCATCCTGGCTGCTCACTGTCATCTCCCT  999

seq1  TCAGATCATCTCCTCCCAGGATGGGCCAGATCCCGGGGAAACCGTGAGGG  1050
      |||||||||||||| |||||||||| |||||||||||  || ||||| ||
seq2  TCAGATCATCTCCT-CCAGGATGGG-CAGATCCCGGG--AAACGTGA-GG  1044

seq1  CAAGTTAACTTTAGGTCAACTTGACAACCAAGCTAGAGTGTCCAAGAGGA  1100
      |||||| |||||| ||| || |||||| | ||||||||||||| ||||||
seq2  CAAGTT-ACTTTA-GTC-ACCTGACAA-CTAGCTAGAGTGTCC-AGAGGA  1089

seq1  GGGAACCTCAACTGAGAAAAGATGGGGCTGTAGGCAGGTCTGTGGGGCAT  1150
       |||||||| ||||| |||||||||||||||||    ||||   ||||||
seq2  -GGAACCTC-ACTGA-AAAAGATGGGGCTGTAG--TAGTCTTGTGGGCAT  1134

seq1  TTCCTTAATTGGTGATCAAT  1170
      || ||||  | |||||||||
seq2  TT-CTTA--TTGTGATCAAT  1151

seq1: chr5_30898472_30898895
seq2: B6Ng01-095D05.g_69_492 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACATGTGCACAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACATGTGCACAAACT  50

seq1  CCTGAGATCTCTGGAGAACTAAATGCCAGTGAGAAGGTGGCTCCTCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATCTCTGGAGAACTAAATGCCAGTGAGAAGGTGGCTCCTCCTAC  100

seq1  CTGGCCTCTGCCTGTCTTGATCTGTGCCAGACTTGTCAGACAAAAATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTGCCTGTCTTGATCTGTGCCAGACTTGTCAGACAAAAATGGC  150

seq1  GCAGACCAGTGTGGCTGCCCAACACTTTTATTTCTCACAGTTTTGATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAGTGTGGCTGCCCAACACTTTTATTTCTCACAGTTTTGATGTC  200

seq1  AGAGAAATCCCAGACCAAGATACCCAAAGACTGGTCATTTGGTAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATCCCAGACCAAGATACCCAAAGACTGGTCATTTGGTAAGAAAC  250

seq1  AGCCGGCTTCCTGCTTCCTGGTTTTTTGTTGACCTCCCGATGCCTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGCTTCCTGCTTCCTGGTTTTTTGTTGACCTCCCGATGCCTGCTCA  300

seq1  ACCCAGGGATTGCATGTAGGGCCTCATGCATGCAAGGCGAGTGCTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGATTGCATGTAGGGCCTCATGCATGCAAGGCGAGTGCTCTGCT  350

seq1  GAGGCACAAGGTCCCGGGCCCTATATTTGGTTTTGAAACAGGGTGACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAAGGTCCCGGGCCCTATATTTGGTTTTGAAACAGGGTGACCAA  400

seq1  ATTACCCAGAATAGCCTTGAATTC  424
      ||||||||||||||||||||||||
seq2  ATTACCCAGAATAGCCTTGAATTC  424