BAC Information

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BAC

Clone NameB6Ng01-095J10
Chromosome5 (Build37)9 (Build37)
Map Location 150,600,197 - 150,600,2549,205,045 - 9,205,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
Downstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095J10.bB6Ng01-095J10.g
ACCDH906489DH906490
length717328
definitionDH906489|Mus musculus domesticus DNA, BAC clone: B6Ng01-095J10, 5' end.DH906490|Mus musculus domesticus DNA, BAC clone: B6Ng01-095J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,600,197 - 150,600,254)(9,205,045 - 9,205,372)
sequence
gaattccattgatggggttttgtatgttgaaccagcccagtatctctttg
atggagcctaactgatcatggttaatgatgtttttgcattcagtttgtga
gtataggtttttgaagtaagaaaaacctaataattctttggatttctgtg
gtgtctgttttgatgtcccccttttcataactgaatttgttaattgaaat
gccccccatcccgccttttagtttgcttcaataagggtttgtctaccttg
ttgattttctaaaagaactagctcttggtttcattgattctttgtattgc
tctctttgtttctaatttattgatttcagtccagtatttgactgtttcct
accctctactactcttgtgtgtttgtttctttttgttctagaacctttag
gtgtgctgttaagttgctagtatgaaatctcactaatgtccttagtagtg
ctatgaactttcctattagcactgctcattttatcccataagtttaggtt
cattgcacacattccattttattgaattctagaaagtctttattttcttt
ttttaacccagtggtcactgagtagagagttgttcagtttccatgagttt
gtaggatttctgttgtttctgttgtggttgaagtccaactttaatccagg
gcaatttaataggatacaggtttttttttgtttttgcttttttgttgttg
ttggtggtggtggtttt
aaggtcattattgtaggttcaaggccaaggccagcttgagactgggggat
gggagggaggagagagagagagagagagagagagagagagagagagagag
aagaggtaaacagcagtcatttctggcacagtgagactcttccaattcac
tccctgcccctgtgatcaacacagatctttgaccacatatggcctataag
aagttacaaatagcattattttttctctcctttaagttttaaagcaagta
gagattgccttgaaatagtggctctgttgacaggaaggtgccattgggca
aatatgctgttttcagtcagtacattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150600197_150600254
seq2: B6Ng01-095J10.b_586_759 (reverse)

seq1  AAACCACCACCACCAACAACAACAAAAAACAACAAAACCCAACAACAAAA  50
      |||||||||||||||||||||||||||||          ||| |||||||
seq2  AAACCACCACCACCAACAACAACAAAAAA---------GCAAAAACAAAA  41

seq1  AAAGAAAA------------------------------------------  58
      |   ||||                                          
seq2  A---AAAACCTGTATCCTATTAAATTGCCCTGGATTAAAGTTGGACTTCA  88

seq1  --------------------------------------------------  58
                                                        
seq2  ACCACAACAGAAACAACAGAAATCCTACAAACTCATGGAAACTGAACAAC  138

seq1  ------------------------------------  58
                                          
seq2  TCTCTACTCAGTGACCACTGGGTTAAAAAAAGAAAA  174

seq1: chr9_9205045_9205372
seq2: B6Ng01-095J10.g_74_401

seq1  AAGGTCATTATTGTAGGTTCAAGGCCAAGGCCAGCTTGAGACTGGGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTATTGTAGGTTCAAGGCCAAGGCCAGCTTGAGACTGGGGGAT  50

seq1  GGGAGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AAGAGGTAAACAGCAGTCATTTCTGGCACAGTGAGACTCTTCCAATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAAACAGCAGTCATTTCTGGCACAGTGAGACTCTTCCAATTCAC  150

seq1  TCCCTGCCCCTGTGATCAACACAGATCTATGACCACATATGGCCTATAAG  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCTGCCCCTGTGATCAACACAGATCTTTGACCACATATGGCCTATAAG  200

seq1  AAGTTACAAATAGCATTATTTTTTCTCTCCTTTAAGTTTTAAAGCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAATAGCATTATTTTTTCTCTCCTTTAAGTTTTAAAGCAAGTA  250

seq1  GAGATTGCCTTGAAATAGTGGCTCTGTTGACAGGAAGGTGCCATTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCCTTGAAATAGTGGCTCTGTTGACAGGAAGGTGCCATTGGGCA  300

seq1  AAAATGCTGTTTTCAGTCAGTACATTCT  328
      || |||||||||||||||||||||||||
seq2  AATATGCTGTTTTCAGTCAGTACATTCT  328