BAC Information

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BAC

Clone NameB6Ng01-095L20
Chromosome5 (Build37)
Map Location 15,052,811 - 15,185,649
singlet/doubletdoublet
Overlap geneSpeer4d, 4930572O03Rik
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095L20.bB6Ng01-095L20.g
ACCDH906598DH906599
length1,1321,123
definitionDH906598|Mus musculus domesticus DNA, BAC clone: B6Ng01-095L20, 5' end.DH906599|Mus musculus domesticus DNA, BAC clone: B6Ng01-095L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,184,482 - 15,185,649)(15,052,811 - 15,053,949)
sequence
gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgggtgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gtgttttctgttcccaagcaaaccacagcactgatctccatctgtttttc
tctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaga
agacaacttcagaaaacaaaagagaagcctcaaatgggccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggcg
ttcaccagggagaggagctctgactccaaaatagtcacttttccattttg
tcaatgatggcaaagggccatgggtgctggctaaaggaaggaaaggatgt
tccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgt
atccaatgctgataactggcagcagaaactctgggagggtcacatctatg
tggtgacacaagaagctttctccagggtctagcacactcttaccaaagcc
tcttgcccaggttcgctatctcatctaaatgctcactcgcattaagggac
aacatggtgtaattggaaatggacagacacatttacttatagttttggcc
ataactggacaaggagaaagtctcagctacattccaccaggcccatagaa
ctctcagaccaaatagaagatgaaagataggaaaatacacacttcagtgt
cagctgtggcccagttccagagatgggagatggtcattttcctccagtgc
cagagatgatgccctttgggtgggcatttcactcacagtttgtagtctgc
aggagtctgcttctatggctcctttacagtagcgtgacaacattagaaaa
aacatcaacaaagcaagagtgatccctttgtttatttaacagaataaaac
agaataattataggtagttccgttaaagatct
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acatacatacatacatacacacacacacacatacacatatacacatacac
acacacacacacacacacacacacatacacacatacacacatacacacat
acaattggtttgtttgtttagttttggatgggtttgaggtgtggttgttg
ttggtttgtttttgaaacagagtctgtctatgtagccttggctgtcatgg
aatttgctttgtaaaccaggctggcctcaaattcagagattcaccttctt
ctgtcttctgagacctagtagtcaagtctccacgcccatcagtttgaatt
gttggattaaagattttggacatttgtctactttatcttttctattaaga
tagaaagaagatagcctattattcaaatttactcagaaaattattttata
gtcagtcatggctggaatgcagatataaaaaaatcagattgtttggaact
gaaaaaaaaagataaaaagtttaagaaactctttaaaaatttcccttttc
aaaaactggctggccattcatacagctcatgaatctttaaggtttaaaca
atataagtgagtagcctcagcttatttcagtttgtcttaaatttaattta
ggttttaatcatgtgtctatagacctgtacttttatcatcgtgttatttt
tccttataacttaactgttaacattaatagacctcaaaaaaaataaatac
atttaaatccgatgagcacaagatgttcagaattgttagcaaaagtcttg
cttttgttaactgtagcttctagccccaagtacagccattctggggaatt
tttgtttagcgccgaagttgactaagaattgccttgctcatctggtgtcc
taccacgtcacagagaatccaagtgacgtgaataaaggaaggaaaaggaa
acagaatggaatcatttcctagatgagcgtgagccacagagcctcagagc
cactcgcagctagctaacccgaaaaatcctcctcaacaatgctcccagaa
agtgtaagggaaaggaacctcgcacttaccgtgctcattaagtgtgtttc
attattgctcaacaaaattgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15184482_15185649
seq2: B6Ng01-095L20.b_51_1182 (reverse)

seq1  AGATCTTTAAACTGAACTAGCTATAATTA-TCTGTTTTTATCCTTGGTAA  49
      |||||||| ||| |||||| ||||||||| ||||||||  ||  || |||
seq2  AGATCTTT-AACGGAACTACCTATAATTATTCTGTTTTATTC--TGTTAA  47

seq1  ATAAACAAAGGGGATCACTC-TGCTTTGTTTGAATGGTTTTTTCTTAAAT  98
      ||||||||| |||||||||| ||||||| ||||   |||||||||  |||
seq2  ATAAACAAA-GGGATCACTCTTGCTTTG-TTGA--TGTTTTTTCT--AAT  91

seq1  GTTGTCACGCTTAACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGAAG  148
      |||||||||||  |||||||||| ||||| |||||| ||||| |||| ||
seq2  GTTGTCACGCT--ACTGTAAAGGAGCCAT-AGAAGC-AGACT-CCTGCAG  136

seq1  GAACTACCAAACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCT  198
        |||| ||||||||||||||||   ||||||||||||||||||||||||
seq2  --ACTA-CAAACTGTGAGTGAAA--TGCCCACCCAAAGGGCATCATCTCT  181

seq1  GGCACTGGAGGAAAACGACCATCTCCCATCTCCTGGAAACTGGGCCCACA  248
      ||||||||||||||| ||||||||||||||| |||| ||||||| |||||
seq2  GGCACTGGAGGAAAATGACCATCTCCCATCT-CTGG-AACTGGG-CCACA  228

seq1  GCTGACACTGAAGTGTGTATTTTCCATCCTTCTATTTGTGTATCTTTCAT  298
      |||||||||||||||||||||||||               ||||||||||
seq2  GCTGACACTGAAGTGTGTATTTTCC---------------TATCTTTCAT  263

seq1  CCTTCTATTTGGTCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGA  348
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -CTTCTATTTGGTCTGAGAGTTCTATGGGCCTGGTGGAATGTAGCTGAGA  312

seq1  CTTTCTCCTTTTCCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCC  398
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTTGTCCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCC  362

seq1  ATTTCCAATTACACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATTACACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGA  412

seq1  GATAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGA  462

seq1  GAAAGCTTCTTGTGTCACCACATATATGTGACCCTCCCAGAGTTTCTGCT  548
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAAGCTTCTTGTGTCACCACATAGATGTGACCCTCCCAGAGTTTCTGCT  512

seq1  GCCAGTTATCAGCATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTATCAGCATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAG  562

seq1  AGACCTGTTTTCTTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTTTTCTTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCA  612

seq1  TGGCCTTTTGCCATCATTGACAAAATGTTAAAGTGACTATTTTGGAGTCA  698
      ||||| |||||||||||||||||||||  |||||||||||||||||||||
seq2  TGGCCCTTTGCCATCATTGACAAAATGGAAAAGTGACTATTTTGGAGTCA  662

seq1  GAGCTCCTCTCCCTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTCTCCCTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGT  712

seq1  TTTTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCCGTTTGAGGCTTCTCT  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCCATTTGAGGCTTCTCT  762

seq1  TTTGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAAT  812

seq1  CCTTTGGCAAGGCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCAAGGCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGA  862

seq1  AGGATGTCTTAAGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTT  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTTTAAGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTT  912

seq1  TGCTTGGGAACAGAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATT  998
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  TGCTTGGGAACAGAAAACACTGACTCAGTGTGGAGTTCTCTAGAAGCATT  962

seq1  TTGATTAGGACTTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGGACTTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCA  1012

seq1  CCCAGTGTGCATGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGCATGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAG  1062

seq1  GTAACTGGCTAGTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGCTAGTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCT  1112

seq1  TGTTCTTTCCTGGTGAATTC  1168
      ||||||||||||||||||||
seq2  TGTTCTTTCCTGGTGAATTC  1132

seq1: chr5_15052811_15053949
seq2: B6Ng01-095L20.g_70_1192

seq1  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50
      |||||||||||||||||||||||||||||||||||||||           
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAG-----------  39

seq1  ACATACATACATACATACATACATACATACACACATACACACATACACAC  100
       |||||||||||||||||||||||||||||||||| ||||||||  ||||
seq2  -CATACATACATACATACATACATACATACACACACACACACAT--ACAC  86

seq1  ATACACACATACACACATACACACACAAACACACACACACACATACACAC  150
      ||| ||||||||||    ||||||||| ||||||||||||||||||||||
seq2  ATATACACATACAC----ACACACACACACACACACACACACATACACAC  132

seq1  ATACACACATACACACATACAATTGGTTTGTCTGTTTAGTTTTGGATGGG  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATACACACATACACACATACAATTGGTTTGTTTGTTTAGTTTTGGATGGG  182

seq1  TTTGAGGTGTCGTTGTTGTTGGTTTCTTTTTGAAACAGA----GTCTATG  246
      |||||||||| |||||||||||||| |||||||||||||    |||||||
seq2  TTTGAGGTGTGGTTGTTGTTGGTTTGTTTTTGAAACAGAGTCTGTCTATG  232

seq1  TAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCAGGCTGGCCTCAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCAGGCTGGCCTCAAAT  282

seq1  TTAGAGATTCACCTTCTTCTGTCTTCTAAGACCTAGTAGTCAAGTCTCCA  346
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAGAGATTCACCTTCTTCTGTCTTCTGAGACCTAGTAGTCAAGTCTCCA  332

seq1  CGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACATTTGTCTACT  396
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCATCAGTTTGAATTGTTGGATTAAAGATTTTGGACATTTGTCTACT  382

seq1  TTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTATTATTCAAAATTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTATTATTCAAATTTAC  432

seq1  TCGGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAGATATAAAAAA  496
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAGATATAAAAAA  482

seq1  ATCAGATTGTTTGGAACTGAAAAAAAAAAAGATAAAAAGTTTAAGAAACT  546
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  ATCAGATTGTTTGGAACTG--AAAAAAAAAGATAAAAAGTTTAAGAAACT  530

seq1  CTTTAAAAATTTCCCTTTTC-AAAACTGGCTGGCCATTCATACAGCTCAT  595
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTAAAAATTTCCCTTTTCAAAAACTGGCTGGCCATTCATACAGCTCAT  580

seq1  GAATC-TTAAGGTTT-AACAATATAAGTGAGTAGCCTCAGCTTATTTCAG  643
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATCTTTAAGGTTTAAACAATATAAGTGAGTAGCCTCAGCTTATTTCAG  630

seq1  TTTGTCTTAAATTTAATTTAGG-TTTAATCATGTGTCTATAGACCTGTAC  692
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGTCTTAAATTTAATTTAGGTTTTAATCATGTGTCTATAGACCTGTAC  680

seq1  TTTTATCATTGTGTTATTTTTCCTTATAACTTAACTGTTAACATTAATAG  742
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATCGTGTTATTTTTCCTTATAACTTAACTGTTAACATTAATAG  730

seq1  ACCTC-AAAAAAATAAATACATTTAAATCCGATGAGCACAAGATGTTCAG  791
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAAAAAAATAAATACATTTAAATCCGATGAGCACAAGATGTTCAG  780

seq1  AATTGTTAGCAAACGTCTTGCTTTTGTT-ACTGTAGCTTCTAGGCCCCAA  840
      ||||||||||||| |||||||||||||| ||||||||||||| |||||||
seq2  AATTGTTAGCAAAAGTCTTGCTTTTGTTAACTGTAGCTTCTA-GCCCCAA  829

seq1  GTACAGCCATTCTGGGG-ATTTCTG-TTAGCGCCGAAG-TGACTTAGGAA  887
      ||||||||||||||||| |||| || |||||||||||| |||| || |||
seq2  GTACAGCCATTCTGGGGAATTTTTGTTTAGCGCCGAAGTTGAC-TAAGAA  878

seq1  TTGCCTTGCTCATCTGGTGTCTTA-CACGTCACAGAGAATCCAAGTGACG  936
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  TTGCCTTGCTCATCTGGTGTCCTACCACGTCACAGAGAATCCAAGTGACG  928

seq1  TGAA-AAAGGAAAGGAAAGGAAACAGAATGGAATCAGTTCCTGGATGAGA  985
      |||| ||||||| | ||||||||||||||||||||| ||||| |||||| 
seq2  TGAATAAAGGAAGGAAAAGGAAACAGAATGGAATCATTTCCTAGATGAGC  978

seq1  GTGAGCCACTAGAGCCTCAGAGCCACTCACAAGCTAGCTAACACCGAAAA  1035
      ||||||||| |||||||||||||||||| | ||||||||||| |||||||
seq2  GTGAGCCAC-AGAGCCTCAGAGCCACTCGC-AGCTAGCTAAC-CCGAAAA  1025

seq1  CACCTCCTCAACAGAGGCTCCCAGAAAGTGTAAGGG-AAGAGACTCCGCA  1084
        ||||||||||| | |||||||||||||||||||| |||  ||  ||||
seq2  ATCCTCCTCAACA-ATGCTCCCAGAAAGTGTAAGGGAAAGGAACCTCGCA  1074

seq1  CTACACCTGGCTCAATTAAGTGTGTTTCGTAATTGTTATCAACAAAAATT  1134
      ||  |||  |||| |||||||||||||| | ||||   |||||||||  |
seq2  CT-TACCGTGCTC-ATTAAGTGTGTTTCATTATTG--CTCAACAAAA--T  1118

seq1  TGCTT  1139
      |||||
seq2  TGCTT  1123