BAC Information

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BAC

Clone NameB6Ng01-095N07
Chromosome5 (Build37)3 (Build37)
Map Location 141,441,479 - 141,442,630120,347,151 - 120,347,251
singlet/doubletsingletsinglet
Overlap geneCard11
Upstream geneA930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12
Downstream geneLOC623466, Sdk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095N07.bB6Ng01-095N07.g
ACCDH906661DH906662
length1,128994
definitionDH906661|Mus musculus domesticus DNA, BAC clone: B6Ng01-095N07, 5' end.DH906662|Mus musculus domesticus DNA, BAC clone: B6Ng01-095N07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(141,441,479 - 141,442,630)(120,347,151 - 120,347,251)
sequence
gaattcccagagacatggggaatgatttccgttttcccagcactagtctt
gatccatcagtagcatcctacatgctaatactctctgccttctgccagga
atagtgtgcataccccgatacctagttactgcgactccttccagatgtct
ggattgtttctactccgcagttcaggctcactcggtttatttaaccagga
caactccatttggcacccaccacaagtacatcaggcagagctgacaggat
gacagtaatggacggtggctgacgagagacagggagtgtggcgcgaaata
tgggcagccatggggaaagatggggaaagggcaataaaaacacagcaact
ccacttaagtaatgctgaggtcacagcacagggcaataaaacaaggtcac
acacagtcggggctcatgcgccatccttaacacacttgtttctgcagctg
acacagggatccatttaatcacagctccaacacagaacacttcttttctc
agagaatagtcaagcgtggctcgccaaccccaagggcatatttcagaagt
tacaaggaattttcttcacctaagtttctccagtgtttttattcctttgc
agtatggggacagagttcagggctctatcatcgaggcaagctattagtca
cgaattctaggcagcggctctaccactgagccacgccccagcccctcact
gggggaatctaggcaggggctctaccactgagccatgccccaggccctca
ctgggggattctaggtaggggctctaccactgagccacgccctcagcctc
tcactggggaattctagacaggggctcttggtggttggttacagggtgct
catgtatcagtcccttgcttctcaggagccactctccctttgttctagca
atactgggaggtcccaagccacatgggggcactgaggtaaattcagacga
tttggagtttcaaccagcttgagctacatagtgagttcaaagcagtctgg
acagaaagagcctcttctctcatcaaacagaagagcagttctctcagtag
gcagcatttctgagtcactgactttagatattagaccgagttcctaatgg
aaatttttatgtgtatcgcatgtggcat
gaattctcacccgaggaataccgaaaggctgagaagcacctgagaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatttcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccaaaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaaacccagatg
cccctcaacagaggaatggatacaagaaatgtggtacagttacacaatgg
agtactactcagctattaacaagaatgaatttatgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacccaatcaccaaa
agaactcaaatgaaatgtactcactgtaagtggatattagcccagaaact
tagtatagcgagatataaggtacaatatgcaaaacacatgaaactgaaga
agaatgaagaccaaagtgtggacactttgctccttcttagaattggaaac
aatcacccatggaaggagttacagagacaaagtttggagctgagacaaaa
ggatggaccatctagagactgccatatccagggatccatcccataattag
cctccaaacgatgacaccattgcatacactagcaagccttttgttgcaag
gacccagatgtagctgtctcttgtgaaactagggcggggcctagcaaaca
cagaagtggatgctcacagtcaactattgaatggatcacagggccccaat
ggaggagctagagaagtatccaagagctaagagatctgcaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_141441479_141442630
seq2: B6Ng01-095N07.b_47_1174

seq1  GAATTCCCAGAGACATGGGGAATGATTTCCGTTTTCCCAGCACTAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAGACATGGGGAATGATTTCCGTTTTCCCAGCACTAGTCTT  50

seq1  GATCCATCAGTAGCATCCTACATGCTAATACTCTCTGCCTTCTGCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCAGTAGCATCCTACATGCTAATACTCTCTGCCTTCTGCCAGGA  100

seq1  ATAGTGTGCATACCCCGATACCTAGTTACTGCGACTCCTTCCAGATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGCATACCCCGATACCTAGTTACTGCGACTCCTTCCAGATGTCT  150

seq1  GGATTGTTTCTACTCCGCAGTTCAGGCTCACTCGGTTTATTTAACCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTTTCTACTCCGCAGTTCAGGCTCACTCGGTTTATTTAACCAGGA  200

seq1  CAACTCCATTTGGCACCCACCACAAGTACATCAGGCAGAGCTGACAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCATTTGGCACCCACCACAAGTACATCAGGCAGAGCTGACAGGAT  250

seq1  GACAGTAATGGACGGTGGCTGACGAGAGACAGGGAGTGTGGCGCGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAATGGACGGTGGCTGACGAGAGACAGGGAGTGTGGCGCGAAATA  300

seq1  TGGGCAGCCATGGGGAAAGATGGGGAAAGGGCAATAAAAACACAGCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCCATGGGGAAAGATGGGGAAAGGGCAATAAAAACACAGCAACT  350

seq1  CCACTTAAGTAATGCTGAGGTCACAGCACAGGGCAATAAAACAAGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAGTAATGCTGAGGTCACAGCACAGGGCAATAAAACAAGGTCAC  400

seq1  ACACAGTCGGGGCTCATGCGCCATCCTTAACACACTTGTTTCTGCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCGGGGCTCATGCGCCATCCTTAACACACTTGTTTCTGCAGCTG  450

seq1  ACACAGGGATCCATTTAATCACAGCTCCAACACAGAACACTTCTTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGATCCATTTAATCACAGCTCCAACACAGAACACTTCTTTTCTC  500

seq1  AGAGAATAGTCAAGCGTGGCTCGCCAACCCCAAGGGCATATTTCAGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGTCAAGCGTGGCTCGCCAACCCCAAGGGCATATTTCAGAAGT  550

seq1  TACAAGGAATTTTCTTCACCTAAGTTTCTCCAGTGTTTTTATTCCTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAATTTTCTTCACCTAAGTTTCTCCAGTGTTTTTATTCCTTTGC  600

seq1  AGTATGGGGACAGAGTTCAGGGCTCTATCATCGAGGCAAGCTATTAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGGACAGAGTTCAGGGCTCTATCATCGAGGCAAGCTATTAGTCA  650

seq1  CGAATTCTAGGCAGCGGCTCTACCACTGAGCCACGCCCCAGCCCCTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCTAGGCAGCGGCTCTACCACTGAGCCACGCCCCAGCCCCTCACT  700

seq1  GGGGGAATCTAGGCAGGGGCTCTACCACTGAGCCATGCCCCAGGCCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATCTAGGCAGGGGCTCTACCACTGAGCCATGCCCCAGGCCCTCA  750

seq1  CTGGGGGATTCTAGGTAGGGGCTCTACCACTGAGCCACGCCCTCAGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGATTCTAGGTAGGGGCTCTACCACTGAGCCACGCCCTCAGCCTC  800

seq1  TCACTGGGGAATTCTAGACAGGGGCTCTTGGTGGTTGGTTACAGGGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGGAATTCTAGACAGGGGCTCTTGGTGGTTGGTTACAGGGTGCT  850

seq1  CATGTATCAGTCCCTTGCTTCTCAGGAGCCACTCTTCCCTTTGTTCTAGC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATGTATCAGTCCCTTGCTTCTCAGGAGCCACTC-TCCCTTTGTTCTAGC  899

seq1  AATACTGGGAGGTCCCAAGCCACATGGGGGCACTGAGGTAAATTCAGGAC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATACTGGGAGGTCCCAAGCCACATGGGGGCACTGAGGTAAATTCA-GAC  948

seq1  GATTTGGAGTTTCAAACCAGCTTGAGCTACATAGTGAGTTCAAAGCCAGT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GATTTGGAGTTTC-AACCAGCTTGAGCTACATAGTGAGTTCAAAG-CAGT  996

seq1  CTGGACCAGAAAGGAGCCTC-TCTCTCATCAAACCAAGAGAGCAAGGTCC  1049
      ||||| |||||| ||||||| |||||||||||| ||  ||||||  || |
seq2  CTGGA-CAGAAA-GAGCCTCTTCTCTCATCAAA-CAGAAGAGCA--GTTC  1041

seq1  TTCTCAGTAGGCAGCAATTTCTGAGTCCACTGACTCTTAAGGATTACAT-  1098
       |||||||||||||| |||||||||| ||||||||        ||| || 
seq2  -TCTCAGTAGGCAGC-ATTTCTGAGT-CACTGACT--------TTAGATA  1080

seq1  TTAGACCGATGTTCTTAATTTGGAAGATTTTTATGTGTATACGCATGTTG  1148
      ||||||||| |||| |||  ||||| |||||||||||||| |||||| ||
seq2  TTAGACCGA-GTTCCTAA--TGGAA-ATTTTTATGTGTAT-CGCATG-TG  1124

seq1  GCAT  1152
      ||||
seq2  GCAT  1128

seq1: chr3_120347151_120347251
seq2: B6Ng01-095N07.g_926_1025 (reverse)

seq1  TAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGC  50
      ||||||||||||| ||||||||||||||||| |||||| |||||||||||
seq2  TAGCTCCTCCATT-GGGGCCCTGTGATCCATTCAATAGTTGACTGTGAGC  49

seq1  ATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCT  100
      ||||||||||||||||||||||||||| | |||| |||||||||||||||
seq2  ATCCACTTCTGTGTTTGCTAGGCCCCGCCCTAGTTTCACAAGAGACAGCT  99

seq1  A  101
      |
seq2  A  100