BAC Information

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BAC

Clone NameB6Ng01-095O24
Chromosome5 (Build37)
Map Location 24,806,245 - 24,807,387
singlet/doubletsinglet
Overlap geneMll3
Upstream geneKcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095O24.bB6Ng01-095O24.g
ACCDH906740DH906741
length1,1551,142
definitionDH906740|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O24, 5' end.DH906741|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagaaaaggccagcatagactttgtcctctggtttactttcat
gaagagtgttttgatcaaacacagcaagcttaaaaaggaaaaatacaaaa
tatatggctcaagtaattaaaggacatcaggaagtaaaatggagctaaat
cctacgttcaggatatttaatgaaattaagggagtggtgacctcagggca
agatcccacccagataagcttgttgtttattcctttgcagctgaagaaag
gatagttctatctaagcattattattacctggttattgttttcatttgga
cttttaatttgaaatgaactacaatgcagaaatggagggcacacttgtga
tccagatcttgaggctggaagacacaggcttttgatccagatcttgagga
atcatagccatgaaaaacttaggcccagacatggtggtacatatcatata
acccaggagacaaaggcaagcagatctctgagttcaaggccagtctggta
tagagcaagttccaggtaaagaaaagtttaggtccaggcatggtggtaca
tgtctttaatcccagaactcagtagacagaggtatacagatctctgagtt
caaggtcagtttacagagcaaattccaggatagtcaagtttaggcaatga
aggatataataatttgcatgttctagtcaaagcaagcagaacttggcagc
ttcagccacatggctctggtcttagagccaagaataaaagggattacagg
aacaattgatgctggttagctggaactaagaaattatcagtgattaagaa
gagaccagcatccctgaagtaaaatcttctgggaagtgttttctgagatc
acaaagaagctgtgttccagagatagacaggtgtaccctgtgctgcagct
gaacttgtaagatcaccaagtggtactgattttgaagtcatatgaagggt
catgaagagcagctgagctgcactgtgagagctcatgaggccatggtgaa
gtgcaagctcagttgcagtgatagctcagatggaggggtcatgcaaaaaa
aaaatgagtttggacatgagaacagctatggaactggtgagctagtagga
aatgctagtctgggtgatgatatacaagaacacgcatctcgacgagtgcc
agttg
gaattccatctcaaggagggacaaggaaaaaaggtaccacgtcccaccaa
agacaattaaataaagtttgatgcacctgtttttgatcagaaaaaataca
tagcaataataaaactgctggtacatgaatacagcttgtattttgagagt
attacattgagcaaagaggggtcatttccaataacttaattaacattgaa
atgacagttacagagattagcagtaactatgaggaagacaggaagagggt
ttttgattctaaagagtagacatggggaacttttttatactggaacattt
tcttgattatatgactaatttatctgtgtgctaataattcatagaattgt
acaccagaacttaaactttccctttgttttaagttgtaagttataaagaa
ctccgaatagtaatgctacaagtagacaagaggttcagagcttaggcatt
ttcagaaattataatttgaatgtgtccccaatcaaatttagggttttgta
agttttgtcaatctttttagtctaagagagggaatgtcatgtgtgctaaa
aattcttttaaaatgtgtcattttgtgtatataagaaatggcatcttact
aaatggttatagtcttagttacagatatcagttattccaactttgtgaat
tcgtgtcacttccttggcatcacacataactgtcttttttttttttattt
tactgctagatgtgttatagtttaaatagcatgtgactttcatgcttgaa
cttttgtggatatttaatatgcaaagaacttttacaagaaaaaaattaac
atttttgtttgtgtgcacatgctcagaatgttccccagtacacatgtggt
cgcaagttttaggagttagctgtctgccttctgctaaggtgggccccagg
atccaattcagctcataggccaaaaattacctgccagtgttttggtgtgg
tgcctaccttgtatatgtgtgagtatatacttcattgtttcagattcgga
aacaacagaagagcatgctgagctgattgaagaattatcggatccaacag
cagcagcagcagcatagtgtgcctaggccttccatccctctatgcagatc
agccccagcccacctctagttttccagggtgccacttcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24806245_24807387
seq2: B6Ng01-095O24.g_69_1210 (reverse)

seq1  AAGTGAAGTGGCA-CCTGG--AACTAGAGGT-GGCTGGGGCTGAACCCCT  46
      ||||||||||||| |||||  |||||||||| |||||||||||| |    
seq2  AAGTGAAGTGGCACCCTGGAAAACTAGAGGTGGGCTGGGGCTGATC----  46

seq1  GGCAT-GAGGATGGGAGGGGCTAGGGCACACTGTTGCTGCTGCTGCTGCT  95
       |||| ||||   ||| || ||| ||||||||  ||||||||||||||||
seq2  TGCATAGAGGGATGGAAGGCCTA-GGCACACT-ATGCTGCTGCTGCTGCT  94

seq1  GTTTGATCCGATAA-TCTTCAATCAGCTCAGCATGCTCTTTCTGTTGTTT  144
      ||| |||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GTTGGATCCGATAATTCTTCAATCAGCTCAGCATGCTC-TTCTGTTGTTT  143

seq1  CCGAATCTGAAACAATGAAGTAATAATTACTCACACATATACAAGGTAGG  194
      ||||||||||||||||||||| |||  |||||||||||||||||||||||
seq2  CCGAATCTGAAACAATGAAGT-ATA--TACTCACACATATACAAGGTAGG  190

seq1  CACCACACCAAAACACTGGCAGGTAATTTTTGGCCTATGAGCTGAATTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCAAAACACTGGCAGGTAATTTTTGGCCTATGAGCTGAATTGG  240

seq1  ATCCCTGGGGCCCA-CATAGCAG-AGGCAGACAGCTAACTCCTAAAACTT  292
      || ||||||||||| | |||||| ||||||||||||||||||||||||||
seq2  AT-CCTGGGGCCCACCTTAGCAGAAGGCAGACAGCTAACTCCTAAAACTT  289

seq1  GCGACCACATGTGTACTGTGGAACA-TCTGAGCATGTGCACACAAACAAA  341
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GCGACCACATGTGTACTGGGGAACATTCTGAGCATGTGCACACAAACAAA  339

seq1  AATGTTAATTTTTTTCTTGTAAAAGTTCTTTGCATATTAAATATCCACAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATTTTTTTCTTGTAAAAGTTCTTTGCATATTAAATATCCACAA  389

seq1  AAGTTCAAGCATGAAAGTCACATGCTATTTAAACTATAACACATCTAGCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGCATGAAAGTCACATGCTATTTAAACTATAACACATCTAGCA  439

seq1  GTAAAAT-AAAAAAAAAAAGACAGTTATGTGTGATGCCAAGGAAGTGACA  490
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAAAAAAAAAAAAGACAGTTATGTGTGATGCCAAGGAAGTGACA  489

seq1  CGAATTCACAAAGTTGGAATAACTGATATCTGTAACTAAGACTATAACCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCACAAAGTTGGAATAACTGATATCTGTAACTAAGACTATAACCA  539

seq1  TTTAGTAAGATGCCATTTCTTATATACACAAAATGACACATTTTAAAAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAGATGCCATTTCTTATATACACAAAATGACACATTTTAAAAGA  589

seq1  ATTTTTAGCACACATGACATTCCCTCTCTTAGACTAAAAAGATTGACAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCACACATGACATTCCCTCTCTTAGACTAAAAAGATTGACAAA  639

seq1  ACTTACAAAACCCTAAATTTGATTGGGGACACATTCAAATTATAATTTCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAAAACCCTAAATTTGATTGGGGACACATTCAAATTATAATTTCT  689

seq1  GAAAATGCCTAAGCTCTGAACCTCTTGTCTACTTGTAGCATTACTATTCG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCCTAAGCTCTGAACCTCTTGTCTACTTGTAGCATTACTATTCG  739

seq1  GAGTTCTTTATAACTTACAACTTAAAACAAAGGGAAAGTTTAAGTTCTGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTATAACTTACAACTTAAAACAAAGGGAAAGTTTAAGTTCTGG  789

seq1  TGTACAATTCTATGAATTATTAGCACACAGATAAATTAGTCATATAATCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATTCTATGAATTATTAGCACACAGATAAATTAGTCATATAATCA  839

seq1  AGAAAATGTTCCAGTATAAAAAAGTTCCCCATGTCTACTCTTTAGAATCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTTCCAGTATAAAAAAGTTCCCCATGTCTACTCTTTAGAATCA  889

seq1  AAAACCCTCTTCCTGTCTTCCTCATAGTTACTGCTAATCTCTGTAACTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCTTCCTGTCTTCCTCATAGTTACTGCTAATCTCTGTAACTGT  939

seq1  CATTTCAATGTTAATTAAGTTATTGGAAATGACCCCTCTTTGCTCAATGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATGTTAATTAAGTTATTGGAAATGACCCCTCTTTGCTCAATGT  989

seq1  AATACTCTCAAAATACAAGCTGTATTCATGTACCAGCAGTTTTATTATTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTCAAAATACAAGCTGTATTCATGTACCAGCAGTTTTATTATTG  1039

seq1  CTATGTATTTTTTCTGATCAAAAACAGGTGCATCAAACTTTATTTAATTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATTTTTTCTGATCAAAAACAGGTGCATCAAACTTTATTTAATTG  1089

seq1  TCTTTGGTGGGACGTGGTACCTTTTTTCCTTGTCCCTCCTTGAGATGGAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTGGGACGTGGTACCTTTTTTCCTTGTCCCTCCTTGAGATGGAA  1139

seq1  TTC  1143
      |||
seq2  TTC  1142