BAC Information

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BAC

Clone NameB6Ng01-095P03
Chromosome5 (Build37)11 (Build37)
Map Location 122,562,522 - 122,563,35559,487,983 - 59,488,427
singlet/doubletsingletsinglet
Overlap geneCcdc63
Upstream genePtpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2
Downstream genePpp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095P03.bB6Ng01-095P03.g
ACCDH906744DH906745
length841881
definitionDH906744|Mus musculus domesticus DNA, BAC clone: B6Ng01-095P03, 5' end.DH906745|Mus musculus domesticus DNA, BAC clone: B6Ng01-095P03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,562,522 - 122,563,355)(59,487,983 - 59,488,427)
sequence
gaattctagacaccaaggctgcatagtgagaccatgtccaaaaaaaaaaa
aaaaacccacaactcggctccctagagttgattgtactgtttgcctctgc
cagcctctgtttgctccctgaaaaaaaaaatggaaagagtataacacctt
ctcctgaaggtggtgaagggagatggggccagaggagtggacatagcctg
gcatctactgactagtgcctagcccaggacgcatttgcatgcaggatgta
ggcttggttcagtggtgcagtacagaactaacatactggaggccctgggt
ttgattcccagcatagacagaaagggagaggggaggagaaagaatagaag
acagactgttggtttgtggtcgttagtgaaaaacagtggaactgagccaa
gggggagacaaaaggagaaactgaggcagagatgcatcagaatggaagtg
cagtcccaggcttaggttggacctccgagcacctgtacaataaacagagc
ttacagacaagggttctgtggttgtgtctgaacaggccatctgacagatg
acggacacatgcaggatgctccttgtccctgtctcttcccctccccctcc
ccctccccttctcagctcacctccatctgtttcaggatgctccgggtgcc
ctcatgggaggtctgctgctgtgaccgcaagttgatgatgtcatcctgct
cagacagacgagaaccagtaggagaaagatgggagttgccctcatcactg
gtatcccaccctaacttccatgtgggggtaacccattcaaggagtcgccc
tcatgtcccccaccttctcctccaggcattctttcttcatc
gaattctccatacagactgcccttgcctcaggcttacagagatctgcctg
cctctgcctctgcctctctagtaaaaggtctgtgctactacatccagcat
aaaccttttcttaaaattacatttgtttgtttgtttgtttagcacatgcg
tatgtgatgtcatgcttatgatgtcagaggagaacttggagtgtttattt
agcacatgcgtctgtgatgtcatgcttatgatgtcagaggagaacttgga
gtggattctctcgttccatctttggttggttggtttgctttgtttttgga
aacggtttctttgtgtcctggagctcactctgtagaccaggctggccttg
aactcatagatccgcctgcctctgcctcccgagtgctgggattaaaggcg
tgcgccaccactgtgtggctcattctatatatgggtcccagggattgcca
tcaagtcagcaatcttgaaagcaagcacctttctttacccatggagccat
cccaccagccctaattgtttgttttaaagatcaaacctcagagctgggaa
tgtggctcagtggtagcacacacttatctaacatatataaggcccttgtt
tcaacccctgttacctaccttgcccccactccactgtaaaagagaaaagg
agaaagaaagggtagaaggaaggaagaaaagccatggtttgagagacatt
tcttgtttctcttttgttgggcctttaaaaacagctgttttaggggttgt
agagatagctcagtgattaagagcactgactgctcttccacagatctgga
gttcaactcccagcaaccacatggtggctcacaaccagtaatgggatctc
atgccccctactggtgtgtctgacatcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122562522_122563355
seq2: B6Ng01-095P03.b_49_889

seq1  GAATTCTAGACACCAAGGCTGCATAGTGAGACCATGTCCAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACACCAAGGCTGCATAGTGAGACCATGTCCAAAAAAAAAAA  50

seq1  AAAAACCCACAACTCGGCTCCCTAGAGTTGATTGTACTGTTTGCCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCACAACTCGGCTCCCTAGAGTTGATTGTACTGTTTGCCTCTGC  100

seq1  CAGCCTCTGTTTGCTCCCTGAAAAAAAAAATGGAAAGAGTATAACACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTGTTTGCTCCCTGAAAAAAAAAATGGAAAGAGTATAACACCTT  150

seq1  CTCCTGAAGGTGGTGAAGGGAGATGGGGCCAGAGGAGTGGACATAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGGTGGTGAAGGGAGATGGGGCCAGAGGAGTGGACATAGCCTG  200

seq1  GCATCTACTGACTAGTGCCTAGCCCAGGACGCATTTGCATGCAGGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACTGACTAGTGCCTAGCCCAGGACGCATTTGCATGCAGGATGTA  250

seq1  GGCTTGGTTCAGTGGTGCAGTACAGAACTAACATACTGGAGGCCCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTTCAGTGGTGCAGTACAGAACTAACATACTGGAGGCCCTGGGT  300

seq1  TTGATTCCCAGCATAGACAGAAAGGGAGAGGGGAGGAGAAAGAATAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCCAGCATAGACAGAAAGGGAGAGGGGAGGAGAAAGAATAGAAG  350

seq1  ACAGACTGTTGGTTTGTGGTCGTTAGTGAAAAACAGTGGAACTGAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTTGGTTTGTGGTCGTTAGTGAAAAACAGTGGAACTGAGCCAA  400

seq1  GGGGGAGACAAAAGGAGAAACTGAGGCAGAGATGCATCAGAATGGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGACAAAAGGAGAAACTGAGGCAGAGATGCATCAGAATGGAAGTG  450

seq1  CAGTCCCAGGCTTAGGTTGGACCTCCGAGCACCTGTACAATAAACAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGGCTTAGGTTGGACCTCCGAGCACCTGTACAATAAACAGAGC  500

seq1  TTACAGACAAGGGTTCTGTGGTTGTGTCTGAACAGGCCATCTGACAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACAAGGGTTCTGTGGTTGTGTCTGAACAGGCCATCTGACAGATG  550

seq1  ACGGACACATGCAGGATGCTCCTTGTCCCTGTCTCTTCCCCTCCCCCTCC  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACGGACACATGCAGGATGCTCCTTGTCCCTGTCTCTTCCCCTCCCCCT-C  599

seq1  CCCCTCCCCTTCTCAGCTCACCTCCATCTGTTTCAGGATGCTCCGGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCTTCTCAGCTCACCTCCATCTGTTTCAGGATGCTCCGGGTGC  649

seq1  CCTCATGGGAGGTCTGCTGCTGTGACCGCAAGTTGATGATGTCATCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGGAGGTCTGCTGCTGTGACCGCAAGTTGATGATGTCATCCTGC  699

seq1  TCAGACAGACGAGAACCAGTAGGAG-AAGATGGGAGTTGCCCTCATCCAC  749
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TCAGACAGACGAGAACCAGTAGGAGAAAGATGGGAGTTGCCCTCAT-CAC  748

seq1  T-GTATCCAACCCTA--CTCCATGT-GGGGTAACCCA-TCAAGGAGTCGC  794
      | |||||| ||||||   ||||||| ||||||||||| ||||||||||||
seq2  TGGTATCCCACCCTAACTTCCATGTGGGGGTAACCCATTCAAGGAGTCGC  798

seq1  C--CCTGT-CCCCACCTTCTCCT-CAGGCATTCTATTCTTCATC  834
      |  | ||| |||||||||||||| |||||||||| |||||||||
seq2  CCTCATGTCCCCCACCTTCTCCTCCAGGCATTCT-TTCTTCATC  841

seq1: chr11_59487983_59488427
seq2: B6Ng01-095P03.g_112_477

seq1  GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTCGCCACCACTG  50
      |||||||||||||||       || |  | |||||  |  || || ||  
seq2  GCCTGCCTCTGCCTCTGCCTCTCTAG--TAAAAGGTCTGTGCTACTACAT  48

seq1  CCCGGCTTATCCACAACATTCTTATACGTGAAGGGATAAAGGAC-TAGGT  99
      || |  | | ||      ||||||             |||  || |  ||
seq2  CCAGCATAAACC----TTTTCTTA-------------AAATTACATTTGT  81

seq1  GTGGAGAAGACCTGTGACTTGTTGGCAAGAGCTATGCCAAAGCATAGACC  149
       ||         | ||  |  || |||      ||||  | |        
seq2  TTG---------TTTGTTTGTTTAGCA-----CATGCGTATG--------  109

seq1  AGCTCCCATCCTCTTGAATAGATGT-AGATTAGCTCTCTGCAAAGTGGGC  198
       | |  ||| ||  |     ||||| |||  ||  ||  |   ||||   
seq2  TGATGTCATGCTTAT-----GATGTCAGAGGAGAACTTGG---AGTGTTT  151

seq1  AGGATAGAGGATCCAGTCTGGGCGTCCTTGTCTAAGTGTGCTATCTCATG  248
      |   |||   ||         |||||          ||||  || |||||
seq2  A-TTTAGCACAT---------GCGTC----------TGTG--ATGTCATG  179

seq1  CCTGT-CTTTCCATCATGCTCCTGCCCTGGTTTTGTTTGTT---TGTTTG  294
      | | |  | ||      |  | ||   ||| ||   | |||   | ||||
seq2  CTTATGATGTCAGAGGAGAACTTGGAGTGGATTCTCTCGTTCCATCTTTG  229

seq1  GTTGGTTGTTTTTTTTGGTTTTTCGAGACAGGGTTTCTTTGTGTAGCCCT  344
      |||||||| |||  || |||||| || ||  ||||||||||         
seq2  GTTGGTTGGTTTGCTTTGTTTTTGGAAAC--GGTTTCTTTG---------  268

seq1  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAA  394
         ||||||||| |||||| |||||||||||||||||| ||||||| | |
seq2  ---TGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTTGAACTCATAGA  315

seq1  TCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCA  444
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCA  365

seq1  C  445
      |
seq2  C  366