BAC Information

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BAC

Clone NameB6Ng01-096A03
Chromosome5 (Build37)3 (Build37)
Map Location 119,832,476 - 119,832,759159,135,954 - 159,137,036
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665162, Thrap2, LOC100039488, EG665194
Downstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096A03.bB6Ng01-096A03.g
ACCDH906791DH906792
length4781,083
definitionDH906791|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A03, 5' end.DH906792|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,832,476 - 119,832,759)(159,135,954 - 159,137,036)
sequence
tttggaggaaaagaaaactttcattgaaaagatgcctccatcagattttc
tgtaggtaagtccatgaggacattttaacaaattaatgattgatacaggc
aagaccagcccactgtgtatggtaccactggacaggtaccacttcagaaa
acaggctgaaggctgaagtggtggctcagccattgagatcattgactgct
cttccagaagacttggattcaattcccagcatccatgttttgggctcaca
accatctatctataactccacttccaggagatgtgacatgatcttccagt
ttctgcaggtactgcatgaatgtggtgcacagatatacatgcaggcaaca
tatacatgaaatatttccaaaacatttttaaaagaaagggttaggaaagg
agagagaggtaaagagaagaaggaggtggtggcagcagtggcagcagtgg
aggagaaggaagaggaggaggaggagga
gaattctttaaaaggggaattttaagaagatttacaaagcaaaaccaaga
cagtcagtggcatactgtgctggcttgattactgctggcttgtctgcttc
tgtttctagtcttacatgaaatctagctgaccttttagctccacactcat
gttgaacacagtagatgcaagtgcattgcatacaaattttctctatagca
cacactacaattctgattcgtagaccaaacatgggacaggatcattagca
ttttcacagtgcttataggctattctagcttgtgaaaaggcgactacttc
cacttgagttaaaggcaataaatgacaagaagaattactttgttgatccc
taacaaagaagaggagtaaacatattgaattcctggtgtggcctaaaatt
tggtgatatccactggccaatgggaaattttcaaagatgcttgttatgca
caaacatattggttttgtaggctgatgcacagttgatttaacccaggaac
ttaatcatcttgtgtaaacatcctagctttgtggattggtctgggccttg
taataagattgagggactatactgataccattcagttgattcatggaatc
aaattgaagatccagaagtaaacccatacagctataaacacttgattttt
tgtaaagaagccaaaactataaagtagaaaaataaagcatcttcaacaaa
tagtcctggtctaactgtatgtctacatgtagaagaatgcaaatagatcc
atatctatcaccctgcacaaaactcaagtccaagtggatcaaagacctta
acataaaactggatacactaagtttgagaaaagagaaagtgggcaatatc
cttgaacccgtaggtatagaaaacaacttccttaacagaacaccaacagc
tcggcactaagatcaataatttctaaatgggacctcatgaaactggaaag
catctgtaaggcaaaagacactgtcaataggacaaaaacagcagcctaca
gaatggaaaagattttttaaattaactttttatttgtttaacatctcaaa
ctgctgctcctccctctccaagtcccttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_119832476_119832759
seq2: B6Ng01-096A03.b_426_532

seq1  ACATTTTTAAAAGAAAAAAAAAAAATCTGGGAAGAGTTGGCAAAGAGAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCACGATAAGCGTATATTATATGAAAAAATTAATTTCAATAAAGAATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAATTAAAAAATATTCTTGTCATTCTTGAAGAAAAAGAATGGGGAGGGG  150
                           |||| ||     ||||||| |||   || 
seq2  --------------------ACATTTTT-----AAAAGAAAGGGTTAGGA  25

seq1  AAGAAGGAAGAG--AAGGAGAAGAAGGAGAGGAAGGGGAAGGAAGAAGGA  198
      ||| ||  ||||  || ||||||||||      ||| |  || || ||  
seq2  AAGGAGAGAGAGGTAAAGAGAAGAAGG------AGGTGGTGGCAGCAGTG  69

seq1  GGAGAAACAGAAGAGGAAGAGGGAGAAGGAGATAGAGGAAAAGAAGGAGA  248
      |      ||| || |||    |||||||||   |||||      ||||| 
seq2  G------CAGCAGTGGA----GGAGAAGGA---AGAGG------AGGAG-  99

seq1  TGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGGA  284
       ||||||||                           
seq2  -GAGGAGGA---------------------------  107

seq1: chr3_159135954_159137036
seq2: B6Ng01-096A03.g_65_1147

seq1  GAATTCTTTAAAAGGGGAATTTTAAGAAGATTTACAAAGCAAAACCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAGGGGAATTTTAAGAAGATTTACAAAGCAAAACCAAGA  50

seq1  CAGTCAGTGGCATACTGTGCTGGCTTGATTACTGCTGGCTTGTCTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGGCATACTGTGCTGGCTTGATTACTGCTGGCTTGTCTGCTTC  100

seq1  TGTTTCTAGTCTTACATGAAATCTAGCTGACCTTTTAGCTCCACACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGTCTTACATGAAATCTAGCTGACCTTTTAGCTCCACACTCAT  150

seq1  GTTGAACACAGTAGATGCAAGTGCATTGCATACAAATTTTCTCTATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACACAGTAGATGCAAGTGCATTGCATACAAATTTTCTCTATAGCA  200

seq1  CACACTACAATTCTGATTCGTAGACCAAACATGGGACAGGATCATTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACAATTCTGATTCGTAGACCAAACATGGGACAGGATCATTAGCA  250

seq1  TTTTCACAGTGCTTATAGGCTATTCTAGCTTGTGAAAAGGCGACTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGTGCTTATAGGCTATTCTAGCTTGTGAAAAGGCGACTACTTC  300

seq1  CACTTGAGTTAAAGGCAATAAATGACAAGAAGAATTACTTTGTTGATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGTTAAAGGCAATAAATGACAAGAAGAATTACTTTGTTGATCCC  350

seq1  TAACAAAGAAGAGGAGTAAACATATTGAATTCCTGGTGTGGCCTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGAAGAGGAGTAAACATATTGAATTCCTGGTGTGGCCTAAAATT  400

seq1  TGGTGATATCCACTGGCCAATGGGAAATTTTCAAAGATGCTTGTTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATATCCACTGGCCAATGGGAAATTTTCAAAGATGCTTGTTATGCA  450

seq1  CAAACATATTGGTTTTGTAGGCTGATGCACAGTTGATTTAACCCAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATATTGGTTTTGTAGGCTGATGCACAGTTGATTTAACCCAGGAAC  500

seq1  TTAATCATCTTGTGTAAACATCCTAGCTTTGTGGATTGGTCTGGGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATCTTGTGTAAACATCCTAGCTTTGTGGATTGGTCTGGGCCTTG  550

seq1  TAATAAGATTGAGGGACTATACTGATACCATTCAGTTGATTCATGGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGATTGAGGGACTATACTGATACCATTCAGTTGATTCATGGAATC  600

seq1  AAATTGAAGATCCAGAAGTAAACCCATACAGCTATAAACACTTGATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAGATCCAGAAGTAAACCCATACAGCTATAAACACTTGATTTTT  650

seq1  TGTAAAGAAGCCAAAACTATAAAGTAGAAAAATAAAGCATCTTCAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAAGCCAAAACTATAAAGTAGAAAAATAAAGCATCTTCAACAAA  700

seq1  TAGTCCTGGTCTAACTGTATGTCTACATGTAGAAGAATGCAAATAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGGTCTAACTGTATGTCTACATGTAGAAGAATGCAAATAGATCC  750

seq1  ATATCTATCACCCTGCACAAAACTCAAGTCCAAGTGGATCAAAGACCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATCACCCTGCACAAAACTCAAGTCCAAGTGGATCAAAGACCTTA  800

seq1  ACATAAAACTGGATACACTAAGTTTGAGAAAAGAGAAAGTGGGCAATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACTGGATACACTAAGTTTGAGAAAAGAGAAAGTGGGCAATATC  850

seq1  CTTGAACCCGTAGGTATAGAAAACAACTTCCTTAACAGAACACCAACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCCGTAGGTATAGAAAACAACTTCCTTAACAGAACACCAACAGC  900

seq1  TCAGGCACTAAGATCAATAATTTCTAAATGGGACCTCATGAAACTGGAAA  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-GGCACTAAGATCAATAATTTCTAAATGGGACCTCATGAAACTGGAAA  949

seq1  GCATCTGTAAGGCAAAAGACACTGTCAATAGGAC-AAAACAGCAGCCTAC  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCATCTGTAAGGCAAAAGACACTGTCAATAGGACAAAAACAGCAGCCTAC  999

seq1  AGAATGGAAAAGATTTTTTAAATTAACTTTTTATTTGTTT-ACATCTCAA  1048
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAATGGAAAAGATTTTTTAAATTAACTTTTTATTTGTTTAACATCTCAA  1049

seq1  ACTGCTGCTCCTCCCTCTCCAAGTCCCTTTCTCCA  1083
      ||||||||||||||||||||||||||| |||||||
seq2  ACTGCTGCTCCTCCCTCTCCAAGTCCC-TTCTCCA  1083