BAC Information

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BAC

Clone NameB6Ng01-096A10
Chromosome5 (Build37)
Map Location 19,306,011 - 19,458,692
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096A10.bB6Ng01-096A10.g
ACCDH906803DH906804
length1,1301,125
definitionDH906803|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A10, 5' end.DH906804|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,306,011 - 19,307,147)(19,457,542 - 19,458,692)
sequence
gaattcaaacaggccaggaacctggaggcaggagatgctacagaggccat
ggaggagtgctgcttactggcttgcttcttctgacttgctcagcctgctt
tatagaacccaggaccaccagcccagggatggcaccacccactgatcact
aactgacaaaataccttacagttggatctcatggaggcgtttcctcaact
gaggactctagtttgtgtcaagttgagaaaaggcagccagtataccctgc
ctagccaatgagttctaggatcagacttaggtgctccacatagaggctga
atatatgtgcaaacaccacagtgttttatgtgtcaactctgaagagtgat
agtgaattgggaaatggccccatggataaagcactaactgcagaagcacg
aggcatagagctcagatcctgagaaccagtgtgagccagatgtgggagcc
tgcatctgctcttccagtgtgccttcaatgagcagtaggcaaagacatga
gaatctgcagattctcacagactaactggtgtacatggtgctgaacagca
gtaaccctgcttcaaacaaggtacaagatgagggtagacacccaaggtta
ccttctgacacccacatgcaaccaaggcatgcatttgcctatgtgagctc
aacatacacacacacacacacacacacacacacacagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagaggtagaaa
aacagccatgttatgacaaataagatctctgtgcttagcaaatggcttgt
gttattggaatcaataatgatcactgctgtgctcaagattctggattcca
atcccattatcagctcacttccccccttttagcagctaacttatgagcag
tcatactctcctggggtatattttctctcttttaagaactaagttgccaa
gaagctaagataggaacatacacattcaaagtttctggaaaacctgtaaa
tattatcctctttcttctcatttgtccgccacaatccaatattcatctgt
gatctatgtgaaagtaaactaccataactctcccgtggctccaaaaagta
ggctgtgggaagcccgcctctatcataagc
gaattcattaagtttgtccttgggacaaatacaacaataaaacaaacaaa
gaaacaaacaatgaagaaagcattatagatataaggactgaagactcctt
tcttatcccggcaggccaaagatgaattccactgaagcttattaatagcc
caaatgctacatatttcctttgcaaacaacctcaaaatcttccccttata
ctccagcacccctggtcaaaaaaaaaaaaaaaaaaaagccttctgttttc
tttatattttcaaaaggcagccaattttctcaatgaggaaaaggaaaaaa
agaagttccttaaaatagctctccacgctgttctataatccgtttttccc
ccctttaaagccaacctcccaatcataagacacttcttcctttaagtgaa
tcagcctgctgttgtaaccttttctatgtgggatgtttttcagtacttac
aaataagactgtatttctagggaataagaggaataaaaggaagaattagt
tcaggtaaacatgacattagaaacagtcaaagaagtagaactgtagaaat
cacttttgaaaacaagtgctatatcctacaccatctgtgtctgctttgct
gatcacccaaagctttatctctatttggtctgctgtctgggatacagcct
gagaataattttgaataggaaagcaagcagtgaaaacaaataaagggtta
cattcattaccaggcactggaaggaaagaagaaaatggtggcaccaaatt
gagctgtgacttgaacattgtaattccccaaatccctagtagacagtagg
tcgttgaaagagtaaggagagtccattggaataatactttcagaggaact
gcttcctatcaaagttgcgttaacacaagctccagtggctatcccttttc
tactgttcatattaaagaacgtgtttataaaaaccaaaccaaaacaaaca
aaaggacccaaagagatattttcacttccctgtatcctctcacgagtctc
taattttgctgcttgtaaatgtctgagagcaacatacaatcactgactct
ctatactctgcctctattttaagatctctatgctagtagacctcatagca
ttgatcttaaaaatgttctttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19306011_19307147
seq2: B6Ng01-096A10.b_48_1177

seq1  GAATTCAAACAGGCCAGGAACCTGGAGGCAGGAGATGCTACAGAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGGCCAGGAACCTGGAGGCAGGAGATGCTACAGAGGCCAT  50

seq1  GGAGGAGTGCTGCTTACTGGCTTGCTTCTTCTGACTTGCTCAGCCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGCTGCTTACTGGCTTGCTTCTTCTGACTTGCTCAGCCTGCTT  100

seq1  TATAGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCACTGATCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCACTGATCACT  150

seq1  AACTGACAAAATACCTTACAGTTGGATCTCATGGAGGCGTTTCCTCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACAAAATACCTTACAGTTGGATCTCATGGAGGCGTTTCCTCAACT  200

seq1  GAGGACTCTAGTTTGTGTCAAGTTGAGAAAAGGCAGCCAGTATACCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCTAGTTTGTGTCAAGTTGAGAAAAGGCAGCCAGTATACCCTGC  250

seq1  CTAGCCAATGAGTTCTAGGATCAGACTTAGGTGCTCCACATAGAGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAATGAGTTCTAGGATCAGACTTAGGTGCTCCACATAGAGGCTGA  300

seq1  ATATATGTGCAAACACCACAGTGTTTTATGTGTCAACTCTGAAGAGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGCAAACACCACAGTGTTTTATGTGTCAACTCTGAAGAGTGAT  350

seq1  AGTGAATTGGGAAATGGCCCCATGGATAAAGCACTAACTGCAGAAGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTGGGAAATGGCCCCATGGATAAAGCACTAACTGCAGAAGCACG  400

seq1  AGGCATAGAGCTCAGATCCTGAGAACCAGTGTGAGCCAGATGTGGGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGAGCTCAGATCCTGAGAACCAGTGTGAGCCAGATGTGGGAGCC  450

seq1  TGCATCTGCTCTTCCAGTGTGCCTTCAATGAGCAGTAGGCAAAGACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGCTCTTCCAGTGTGCCTTCAATGAGCAGTAGGCAAAGACATGA  500

seq1  GAATCTGCAGATTCTCACAGACTAACTGGTGTACATGGTGCTGAACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCAGATTCTCACAGACTAACTGGTGTACATGGTGCTGAACAGCA  550

seq1  GTAACCCTGCTTCAAACAAGGTACAAGATGAGGGTAGACACCCAAGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCTGCTTCAAACAAGGTACAAGATGAGGGTAGACACCCAAGGTTA  600

seq1  CCTTCTGACACCCACATGCAACCAAGGCATGCATTTGCCTATGTGAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGACACCCACATGCAACCAAGGCATGCATTTGCCTATGTGAGCTC  650

seq1  AACATACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA  700

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGAAA  750

seq1  AACAGCCATGTTATGACAAATAAGATCTCTGTGCTTAGCAAATGGCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCATGTTATGACAAATAAGATCTCTGTGCTTAGCAAATGGCTTGT  800

seq1  GTTATTGGAATCAATAATGATCACTGCTGTGCTCAAGATTCTGGATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGAATCAATAATGATCACTGCTGTGCTCAAGATTCTGGATTCCA  850

seq1  ATCCAATTATCAGCTCACTTCCCCCCTTTTAGCAGCTAACTTATGAGCAG  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTATCAGCTCACTTCCCCCCTTTTAGCAGCTAACTTATGAGCAG  900

seq1  TCATACTCTC--TGGGTATATTTTCTCTCTTTTAAGAAACTAAGTTGCCA  948
      ||||||||||   ||||||||||||||||||||||| |||||||||||||
seq2  TCATACTCTCCTGGGGTATATTTTCTCTCTTTTAAG-AACTAAGTTGCCA  949

seq1  AGAAGCTAAGATAGGAACATAACACATTTCAAAGTTTCTGGAAAAACTTG  998
      |||||||||||||||||||| ||||| |||||||||||||| ||||| ||
seq2  AGAAGCTAAGATAGGAACAT-ACACA-TTCAAAGTTTCTGG-AAAACCTG  996

seq1  TAAATAATTATCCTCTTTCTTCTCATTTTGTCCGCCACTATCACATATTC  1048
      ||||| ||||||||||||||||||| |||||||||||| |||  ||||||
seq2  TAAAT-ATTATCCTCTTTCTTCTCA-TTTGTCCGCCACAATCCAATATTC  1044

seq1  ATCTGTGATCTATGTGAAAGTAAAACTACCCATAACCTCT-CCGTGGCCA  1097
      ||||||||||||||||||||| |||||| |||||| |||| |||||||  
seq2  ATCTGTGATCTATGTGAAAGT-AAACTA-CCATAA-CTCTCCCGTGGCTC  1091

seq1  CAATAATTAGGGCTGTGGGAAGGCCAGCTCTATCATAAGC  1137
      ||| || || |||||||||||| ||  |||||||||||||
seq2  CAAAAAGTA-GGCTGTGGGAAGCCCGCCTCTATCATAAGC  1130

seq1: chr5_19457542_19458692
seq2: B6Ng01-096A10.g_67_1191 (reverse)

seq1  ACTGAAAGAACAATTTTTTTAAAGATCCATATGCCTATGGAGGTCTTACT  50
      ||||||||||||    |||| |||||| ||    |||| |||||| ||||
seq2  ACTGAAAGAACA----TTTTTAAGATCAAT---GCTAT-GAGGTC-TACT  41

seq1  AGGCATAGGAGGATTCTATAAAATAGAGGCAGAGTATAGAGGAGTCAGTG  100
      | ||||| |||   ||| |||||||||||||||||||||| |||||||||
seq2  A-GCATA-GAG--ATCT-TAAAATAGAGGCAGAGTATAGA-GAGTCAGTG  85

seq1  GAATTGTATGTATGCTCTCAGACATTTTACAAGCAGCAAAAATTAGAGAC  150
        ||||||||| |||||||||||| |||||||||||| ||||||||||||
seq2  --ATTGTATGT-TGCTCTCAGACA-TTTACAAGCAGC-AAAATTAGAGAC  130

seq1  TCGTGAGAGGAATTACAGGGAAGTGAAAATATCTCTTTGGGTTCCTTTTT  200
      |||||||||||  |||||||||||||||||||||||||||||  | ||||
seq2  TCGTGAGAGGA--TACAGGGAAGTGAAAATATCTCTTTGGGT--CCTTTT  176

seq1  GTTTGTTTTGGTTTTGGTTTTTTATAAACACGTTCTTTAATATGAACAGT  250
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGGTTT--GGTTTTTATAAACACGTTCTTTAATATGAACAGT  224

seq1  AGAAAAGGGATAGCCACTGGAGCTTGTGTTAACGCAACTTTGATAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGATAGCCACTGGAGCTTGTGTTAACGCAACTTTGATAGGAAG  274

seq1  CAGTTCCTCTGAAAGTATTATTCCAATGGACTCTCCTTACTCTTTCAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTCTGAAAGTATTATTCCAATGGACTCTCCTTACTCTTTCAACG  324

seq1  ACCTACTGTCTACTAGGGATTTGGGGAATTACAATGTTCAAGTCACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGTCTACTAGGGATTTGGGGAATTACAATGTTCAAGTCACAGCT  374

seq1  CAATTTGGTGCCACCATTTTCTTCTTTCCTTCCAGTGCCTGGTAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGTGCCACCATTTTCTTCTTTCCTTCCAGTGCCTGGTAATGAAT  424

seq1  GTAACCCTTTATTTGTTTTCACTGCTTGCTTTCCTATTCAAAATTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCTTTATTTGTTTTCACTGCTTGCTTTCCTATTCAAAATTATTCT  474

seq1  CAGGCTGTATCCCAGACAGCAGACCAAATAGAGATAAAGCTTTGGGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTATCCCAGACAGCAGACCAAATAGAGATAAAGCTTTGGGTGAT  524

seq1  CAGCAAAGCAGACACAGATGGTGTAGGATATAGCACTTGTTTTCAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGCAGACACAGATGGTGTAGGATATAGCACTTGTTTTCAAAAGT  574

seq1  GATTTCTACAGTTCTACTTCTTTGACTGTTTCTAATGTCATGTTTACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTACAGTTCTACTTCTTTGACTGTTTCTAATGTCATGTTTACCTG  624

seq1  AACTAATTCTTCCTTTTATTCCTCTTATTCCCTAGAAATACAGTCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTCTTCCTTTTATTCCTCTTATTCCCTAGAAATACAGTCTTATT  674

seq1  TGTAAGTACTGAAAAACATCCCACATAGAAAAGGTTACAACAGCAGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACTGAAAAACATCCCACATAGAAAAGGTTACAACAGCAGGCTG  724

seq1  ATTCACTTAAAGGAAGAAGTGTCTTATGATTGGGAGGTTGGCTTTAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTAAAGGAAGAAGTGTCTTATGATTGGGAGGTTGGCTTTAAAGG  774

seq1  GGGGAAAAACGGATTATAGAACAGCGTGGAGAGCTATTTTAAGGAACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAACGGATTATAGAACAGCGTGGAGAGCTATTTTAAGGAACTTC  824

seq1  TTTTTTTCCTTTTCCTCATTGAGAAAATTGGCTGCCTTTTGAAAATATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCTTTTCCTCATTGAGAAAATTGGCTGCCTTTTGAAAATATAA  874

seq1  AGAAAACAGAAGGCTTTTTTTTTTTTTTTTTTTTGACCAGGGGTGCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGAAGGCTTTTTTTTTTTTTTTTTTTTGACCAGGGGTGCTGGA  924

seq1  GTATAAGGGGAAGATTTTGAGGTTGTTTGCAAAGGAAATATGTAGCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGGGAAGATTTTGAGGTTGTTTGCAAAGGAAATATGTAGCATTT  974

seq1  GGGCTATTAATAAGCTTCAGTGGAATTCATCTTTGGCCTGCCGGGATAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTAATAAGCTTCAGTGGAATTCATCTTTGGCCTGCCGGGATAAG  1024

seq1  AAAGGAGTCTTCAGTCCTTATATCTATAATGCTTTCTTCATTGTTTGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTCTTCAGTCCTTATATCTATAATGCTTTCTTCATTGTTTGTTT  1074

seq1  CTTTGTTTGTTTTATTGTTGTATTTGTCCCAAGGACAAACTTAATGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTGTTTTATTGTTGTATTTGTCCCAAGGACAAACTTAATGAATT  1124

seq1  C  1151
      |
seq2  C  1125