BAC Information

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BAC

Clone NameB6Ng01-096P06
Chromosome5 (Build37)
Map Location 40,705,577 - 40,831,161
singlet/doubletdoublet
Overlap geneLOC100040502
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P06.bB6Ng01-096P06.g
ACCDH907454DH907455
length1,1151,105
definitionDH907454|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P06, 5' end.DH907455|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,705,577 - 40,706,707)(40,830,053 - 40,831,161)
sequence
gaattccttacattgaattacttaatatcattctggactgcacttaataa
atctgatagtgtattaagagaacggttggctttagattggctttgctctt
ctcatcagagtaatatgaagggatttcaatgtctaaataggctgattcaa
aggatcaaaaccgtgaaaaaagaatgcttgtctgagacaacaatgtgaga
taaatcttgcatgaacccagcatcttgctgctttataatcaaatagaaat
atcattaccatcaagagattattgtttattgatgcatggatatttagcaa
ttgtatatacagaagttggttaaattttcataattaagaaaaataaaaaa
taaacattatctatttatatcataaagcagtgtttatcacttaccactat
caaagttcagattgtttttcttaattaactaacttttctgggcaggtgag
attcctgagaggttaaagatccttaatatttactttggatacccaagatc
aactcccaggaccaacatggtaaaggagacctctacatgcctctcttgac
aaggctgtgtatccacaggtttatatgtagacaggtacacatacacactt
aaatgtaatgaaaatcacatggttattctattagagtcttttacatagaa
aacaaaatccctttcataccacttacagcattttttcttgttgttgttgt
tttgtttttttttttttttggtttttggtttttttttgtttgtttgtttt
tgagactgggtttctctgtgtaaccctggctgtcctggaactcactctgt
ataccagactggccttgaactcagaaatctgcctgcctctgcccttaaat
gctgggattaaaggtgtgcaccaccacacccggcttacagcattcttttt
agctaaacatctttgaataatcaaagtgaatttaggacagatgaaatgga
gatcattaacaactagttaaaaaacacaaaaggaaatctgaaatctgagc
ctatcatagtttagttattgattgaactatagtttctgatttttaaaaaa
taaacttcaatagtttataatagtaatacaatcccatactgtcactgtaa
tgcataaaaaatatc
gaattccacaggaagaacaacagagtcaactaacctggacccttgggact
ctcagagactgaaccatcaagcaaagaacatacatgggctggacctagac
ctgcctgcacacacgtagcagatgtgcagcttggtcttcaggagggtccc
caaaaaactggtgcaggagatatcccaaaagccattatctgtccacgtgg
tctgctctttagttgggctgccttgtctggcctcaatgagagaggataaa
cctgttccctcatagatctgatatgccagggtaggggatacccatgtggt
cccactctcttagaggatacagggagaggggataaggaaaggtttgtggg
agaccaggagggggacactgagcaggatgtaaagcaatttttaaaaatga
caaaaaattaggctatcaaaaaccattcatggaaagtgggggtaaatcaa
gatagagatttaacttagtggaaatatgcttgttcagcattcctgggtcc
tgcatttgcactgtcacagaagcaagggggttggggccactgataaaatc
agaacaatgtatttacattatttttaaacaataatataataactaatttt
aaatactgtcaaaaagaattaaagatttttaagatacatatctacttcca
tttggaggcagtgataaaacactctgaccaataaacagtttggagggggt
tgtttctttggcttagaatgccaagtcacaatccataattgagggaagtc
tgggcaggaactccaggaaaagcttgaagtagaaactctttaggaactcg
gcttgctggattcttcttggtcttgcttataagcttacaggctcacagat
tcatgctttctaatacagcctgggaccagctgcctagggatggtgtcacc
tacagtggtctgagttttttctggatcagttaataatcaacacaatccct
tttcaaacattgcactagacaaatctcacaaaggcaatattcatttgagt
ctcttttatcaggaatttccaacagttccaaattgacagctagtgcttcc
cagaacgaataccaacgaattatacttaaaagtataatataagtagacag
gttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40705577_40706707
seq2: B6Ng01-096P06.b_47_1161

seq1  GAATTCCTTACATTGAATTACTTAATATCATTCTGGACTGCACTTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACATTGAATTACTTAATATCATTCTGGACTGCACTTAATAA  50

seq1  ATCTGATAGTGTATTAAGAGAACGGTTGGCTTTAGATTGGCTTTGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAGTGTATTAAGAGAACGGTTGGCTTTAGATTGGCTTTGCTCTT  100

seq1  CTCATCAGAGTAATATGAAGGGATTTCAATGTCTAAATAGGCTGATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGAGTAATATGAAGGGATTTCAATGTCTAAATAGGCTGATTCAA  150

seq1  AGGATCAAAACCGTGAAAAAAGAATGCTTGTCTGAGACAACAATGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAACCGTGAAAAAAGAATGCTTGTCTGAGACAACAATGTGAGA  200

seq1  TAAATCTTGCATGAACCCAGCATCTTGCTGCTTTATAATCAAATAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTGCATGAACCCAGCATCTTGCTGCTTTATAATCAAATAGAAAT  250

seq1  ATCATTACCATCAAGAGATTATTGTTTATTGATGCATGGATATTTAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACCATCAAGAGATTATTGTTTATTGATGCATGGATATTTAGCAA  300

seq1  TTGTATATACAGAAGTTGGTTAAATTTTCATAATTAAGAAAAATAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATACAGAAGTTGGTTAAATTTTCATAATTAAGAAAAATAAAAAA  350

seq1  TAAACATTATCTATTTATATCATAAAGCAGTGTTTATCACTTACCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTATCTATTTATATCATAAAGCAGTGTTTATCACTTACCACTAT  400

seq1  CAAAGTTCAGATTGTTTTTCTTAATTAACTAACTTTTCTGGGCAGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCAGATTGTTTTTCTTAATTAACTAACTTTTCTGGGCAGGTGAG  450

seq1  ATTCCTGAGAGGTTAAAGATCCTTAATATTTACTTTGGATACCCAAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAGAGGTTAAAGATCCTTAATATTTACTTTGGATACCCAAGATC  500

seq1  AACTCCCAGGACCAACATGGTAAAGGAGACCTCTACATGCCTCTCTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCAGGACCAACATGGTAAAGGAGACCTCTACATGCCTCTCTTGAC  550

seq1  AAGGCTGTGTATCCACAGGTTTATATGTAGACAGGTACACATACACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTGTATCCACAGGTTTATATGTAGACAGGTACACATACACACTT  600

seq1  AAATGTAATGAAAATCACATGGTTATTCTATTAGAGTCTTTTACATAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATGAAAATCACATGGTTATTCTATTAGAGTCTTTTACATAGAA  650

seq1  AACAAAATCCCTTTCATACCACTTACAGCATTTTTTCTTGTTGTTGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCCCTTTCATACCACTTACAGCATTTTTTCTTGTTGTTGTTGT  700

seq1  TTTGTTTTTTTTTTTTTTTGGTTTTTGGTTTTTTTTTGTTTGTTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTTTTTTGGTTTTTGGTTTTTTTTTGTTTGTTTGTTTT  750

seq1  TGAGACTGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGT  800

seq1  ATACCAGACTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCCTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGACTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCCTTAAAT  850

seq1  GCTGGGATTAAAGGTGTGCACCACCACACCCGGCTTACAGCATTCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGCACCACCACACCCGGCTTACAGCATTCTTTTT  900

seq1  AGCTAAACATCTTTGAATAATCAAAGTGAATTTAGGACAGATGAAATGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACATCTTTGAATAATCAAAGTGAATTTAGGACAGATGAAATGGA  950

seq1  GATCAATTAACAACTAGTTAAAAAAACACAAAAAGGAAATCTGAAAATCT  1000
      |||| |||||||||||||| ||||||||| ||||||||||||| ||||||
seq2  GATC-ATTAACAACTAGTT-AAAAAACAC-AAAAGGAAATCTG-AAATCT  996

seq1  GAGGCCTATCATAGTTTAGTTATTGATTGAACTATATGTTTCTGAATTTT  1050
      || ||||||||||||||||||||||||||||||||| ||||||||  |||
seq2  GA-GCCTATCATAGTTTAGTTATTGATTGAACTATA-GTTTCTGA--TTT  1042

seq1  TTAAAAAAATTAAAACTTCAATAATTTTATAAATAGTAATTACAATCCCC  1100
      ||||||||    |||||||||| | ||||| |||||||| |||||| |||
seq2  TTAAAAAA---TAAACTTCAAT-AGTTTAT-AATAGTAA-TACAAT-CCC  1085

seq1  ATACTGTCCACTGGAATGCATAAAAAATATC  1131
      ||||||| ||||| |||||||||||||||||
seq2  ATACTGT-CACTGTAATGCATAAAAAATATC  1115

seq1: chr5_40830053_40831161
seq2: B6Ng01-096P06.g_68_1172 (reverse)

seq1  TGAACCTGTCCTAC-TATATTATAATTTTATAGTATAATACTGTTTGGTA  49
      ||||||||| |||| ||||||||| ||||| ||||||||  |  ||||||
seq2  TGAACCTGT-CTACTTATATTATACTTTTA-AGTATAAT--TCGTTGGTA  46

seq1  TCTGTTCTGGGTAGCACTAGCTGTCAATTTGGAACTGTTTAGAAATCCCT  99
      |  |||||||| ||||||||||||||||||||||||| || ||||| |||
seq2  TTCGTTCTGGGAAGCACTAGCTGTCAATTTGGAACTG-TTGGAAATTCCT  95

seq1  GATAAAAGAGACTCAATTGAATAATTGCCTTTGTGAGATTTGTCTGAGTG  149
      |||||||||||||||| ||||| |||||||||||||||||||||| ||||
seq2  GATAAAAGAGACTCAAATGAAT-ATTGCCTTTGTGAGATTTGTCT-AGTG  143

seq1  C-ATGTTTG-AAAGGGATTGTGTTGATTATTAACTGATCCAGAAAAAACT  197
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTGAAAAGGGATTGTGTTGATTATTAACTGATCCAGAAAAAACT  193

seq1  CAGACCACTGTAGGTGACACCATCCCTAGGCAGCTGGTCCCAGGCTGTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCACTGTAGGTGACACCATCCCTAGGCAGCTGGTCCCAGGCTGTAT  243

seq1  TAGAAAGCATGAATCTGTGAGCCTGTAAGCTTATAAGCAAGACCAAGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCATGAATCTGTGAGCCTGTAAGCTTATAAGCAAGACCAAGAAG  293

seq1  AATCCAGCAAGCCGAGTTCCTTAAGAGTTTCTACTTCAAGCTTTTCCTGG  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATCCAGCAAGCCGAGTTCCTAAAGAGTTTCTACTTCAAGCTTTTCCTGG  343

seq1  AGTTCCTGCCCAGACTTCCCTCAATTATGGATTGTGACTTGGCATTCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGCCCAGACTTCCCTCAATTATGGATTGTGACTTGGCATTCTAA  393

seq1  GCCAAAGAAACAACCCCCTCCAAACTGTTTATTGGTCAGAGTGTTTTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAAACAACCCCCTCCAAACTGTTTATTGGTCAGAGTGTTTTATC  443

seq1  ACTGCCTCCAAATGGAAGTAGATATGTATCTTAAAAATCTTTAATTCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCCAAATGGAAGTAGATATGTATCTTAAAAATCTTTAATTCTTT  493

seq1  TTGACAGTATTTAAAATTAGTTATTATATTATTGTTTAAAAATAATGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTATTTAAAATTAGTTATTATATTATTGTTTAAAAATAATGTAA  543

seq1  ATACATTGTTCTGATTTTATCAGTGGCCCCAACCCCCTTGCTTCTGTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGTTCTGATTTTATCAGTGGCCCCAACCCCCTTGCTTCTGTGAC  593

seq1  AGTGCAAATGCAGGACCCAGGAATGCTGAACAAGCATATTTCCACTAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAATGCAGGACCCAGGAATGCTGAACAAGCATATTTCCACTAAGT  643

seq1  TAAATCTCTATCTTGATTTACCCCCACTTTCCATGAATGGTTTTTGATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTATCTTGATTTACCCCCACTTTCCATGAATGGTTTTTGATAG  693

seq1  CCTAATTTTTTGTCATTTTTAAAAATTGCTTTACATCCTGCTCAGTGTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTTTTGTCATTTTTAAAAATTGCTTTACATCCTGCTCAGTGTCC  743

seq1  CCCTCCTGGTCTCCCACAAACCTTTCCTTATCCCCTCTCCCTGTATCCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGTCTCCCACAAACCTTTCCTTATCCCCTCTCCCTGTATCCTC  793

seq1  TAAGAGAGTGGGACCACATGGGTATCCCCTACCCTGGCATATCAGATCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTGGGACCACATGGGTATCCCCTACCCTGGCATATCAGATCTA  843

seq1  TGAGGGAACAGGTTTATCCTCTCTCATTGAGGCCAGACAAGGCAGCCCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAACAGGTTTATCCTCTCTCATTGAGGCCAGACAAGGCAGCCCAA  893

seq1  CTAAAGAGCAGACCACGTGGACAGATAATGGCTTTTGGGATATCTCCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGCAGACCACGTGGACAGATAATGGCTTTTGGGATATCTCCTGC  943

seq1  ACCAGTTTTTTGGGGACCCTCCTGAAGACCAAGCTGCACATCTGCTACGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTTTTGGGGACCCTCCTGAAGACCAAGCTGCACATCTGCTACGT  993

seq1  GTGTGCAGGCAGGTCTAGGTCCAGCCCATGTATGTTCTTTGCTTGATGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGGCAGGTCTAGGTCCAGCCCATGTATGTTCTTTGCTTGATGGT  1043

seq1  TCAGTCTCTGAGAGTCCCAAGGGTCCAGGTTAGTTGACTCTGTTGTTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTGAGAGTCCCAAGGGTCCAGGTTAGTTGACTCTGTTGTTCTT  1093

seq1  CCTGTGGAATTC  1109
      ||||||||||||
seq2  CCTGTGGAATTC  1105