BAC Information

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BAC

Clone NameB6Ng01-097A23
Chromosome5 (Build37)
Map Location 17,212,866 - 17,341,536
singlet/doubletdoublet
Overlap geneSema3c, Cd36
Upstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneGnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097A23.bB6Ng01-097A23.g
ACCDH907532DH907533
length1,0751,028
definitionDH907532|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A23, 5' end.DH907533|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,340,465 - 17,341,536)(17,212,866 - 17,213,879)
sequence
gaattcatggtaggggttttctactgaggactttttcttcttcacagctg
ccttctgaaatgtgtggagcaactggtggatggtttcctagcctttcgaa
ggtaagttatatgggattttccctttacattaaaaaaagaaagaaagaaa
aatttgtctgcctttacactgagaggagataatagcattttaaaacactt
actatgaaaaatgtcaaatgaagaataaataaatccattgttttcttaca
gtctttaggctttattgaatgcttatatgttatttacagatctacctata
tttttgctggatagtattaaaatattgttcagtgacaagtgatattttag
tttatgatttttgatatcatgtatattttcaacactcctttgtcaatatt
taaaatgatttataggccaatttgggttttattcaaaacttctctattta
aacatgatttttactttaaaatataagaacatttttcaagagtgttgata
cagtgagattagtatataaacaacttgtaaatcttatagagcactctgtc
ttgaatgcaatttgttaactatttgctgttgttcagtgtcattagcttgt
tgaagtttcagtggacaatttgtggtgaacttgattattttctccacagt
taggagtaaggcaggaattacatatacatttactgagcacttttctctaa
tgaacaaaaatattttacttcccaaaaggagtgggtaatttcaaataatt
actttaaatttaattaatgtgtatcagtatactacttaaatgtaaaaatg
aaagaaaattaatgcctttgaaaattaaaaaaatcattttcaaatactag
taagttatttccctaaatcataaattttgggtttaaagaatagataacac
attttagaaaaaaattactacctaattattaactattaatggtattacct
aagtaactataaatggcataatttttaatattaaattttgaaatgcttcc
taaagatgtaagggatccaagacttccagtccttttcataataattttta
gtttggcaatgttctttgaagtcta
gaattctgtgtctattctttaaaaaaaaaaaaaaagttaggcttttaagg
aggtgataaaggccactcaatcaaccttgtgacctccctgagcacaggtg
cctctgttactgggatacacaaggaggaagcaggcttgactagaattctt
tcaggagttagcaaccactgagagggagggactagacctgattgaggagg
cagagtttctccaatccaatggcaggcacagcttgtttccagggaaacct
gaggacttcagttaaaacgcaggcagggggataaataccaatgatgactc
tggtgacctgctgagtaaagagctatgcatcgtcacttgcttgagacagc
ccgcacctactgtgtaatgcatgcggactctgggttagacagaagagctc
gaaggattagcgctgtgatcccttgtattacaatttctaaaaaataaaaa
taaagaatcataaagaatgcttatttgggggaagtttctttatatattga
atagagaggaaattgaataacaaatgcatattaatgattcttctgttatc
tttgtgtgtaaatttgcattatggaaatcacttctaaagtttgtcttggt
aaatcacacatttatgagtgctttaaatctattcagggatctactattca
gggatctattatctacataatctatatgaagaagctagggtcaataaaga
gacagataattcaatatagccacaatttgagtagactcagattgaatata
ggaaaagtgggtctcaccttactgagggataccttatgagccatagcaaa
gcgtggtctttacaagattttctataagtatgttcttttagtaaaatctc
aaccgaaatggccacataccttacccgggctcgtaacatcactaaaagac
ttcctattggggaatttagagagcagatatcagctctgttcttcatgcag
cctacttctgcagggagtttcatgctcgatacctggaaaggacacttgca
aggctatgtagaagattttaataacggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17340465_17341536
seq2: B6Ng01-097A23.b_47_1121 (reverse)

seq1  TAGACTTTCAAAAGACATTGCC-AACTTAAAATTATTTATG-AAAGGACT  48
      ||||| ||||||  |||||||| |||| ||||||| ||||| ||||||||
seq2  TAGAC-TTCAAAGAACATTGCCAAACTAAAAATTA-TTATGAAAAGGACT  48

seq1  GGAAAGTCTTGGAT-CCTTACATCTTTA-GAAACATTTC-AAATTTATTA  95
      || ||||||||||| ||||||||||||| ||| |||||| ||||||| ||
seq2  GG-AAGTCTTGGATCCCTTACATCTTTAGGAAGCATTTCAAAATTTAATA  97

seq1  TTAAAAATTATGCCATTTATAGTTACTTAGTTAATAACAATAATAGTTAA  145
      |||||||||||||||||||||||||||||| ||||| || ||||||||||
seq2  TTAAAAATTATGCCATTTATAGTTACTTAGGTAATACCATTAATAGTTAA  147

seq1  TAATTAGGTAGTTAATTTTTTTCTAAAATGTGTTATCTATTCTTTAAACC  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGTAG-TAATTTTTTTCTAAAATGTGTTATCTATTCTTTAAACC  196

seq1  CAAAA-TTATGATTTAGGGAAATAACTTACTAGTATTTG-AAATGATTTT  243
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAAATTTATGATTTAGGGAAATAACTTACTAGTATTTGAAAATGATTTT  246

seq1  TTTAATTTTCAAAGGCATTAATTTTCTTTCATTTTTACATTTAAGTAGTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTCAAAGGCATTAATTTTCTTTCATTTTTACATTTAAGTAGTA  296

seq1  TACTGATACACATTAATTAAATTTAAAGTAATTATTTGAAATTACCCACT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATACACATTAATTAAATTTAAAGTAATTATTTGAAATTACCCACT  346

seq1  CCTTTTGGGAAGTAAAATATTTTTGTTCATTAGAGAAAAGTGCTCAGTAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGGAAGTAAAATATTTTTGTTCATTAGAGAAAAGTGCTCAGTAA  396

seq1  ATGTATATGTAATTCCTGCCTTACTCCTAACTGTGGAGAAAATAATCAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGTAATTCCTGCCTTACTCCTAACTGTGGAGAAAATAATCAAG  446

seq1  TTCACCACAAATTGTCCACTGAAACTTCAACAAGCTAATGACACTGAACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACAAATTGTCCACTGAAACTTCAACAAGCTAATGACACTGAACA  496

seq1  ACAGCAAATAGTTAACAAATTGCATTCAAGACAGAGTGCTCTATAAGATT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATAGTTAACAAATTGCATTCAAGACAGAGTGCTCTATAAGATT  546

seq1  TACAAGTTGTTTATATACTAATCTCACTGTATCAACACTCTTGAAAAATG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTGTTTATATACTAATCTCACTGTATCAACACTCTTGAAAAATG  596

seq1  TTCTTATATTTTAAAGTAAAAATCATGTTTAAATAGAGAAGTTTTGAATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATTTTAAAGTAAAAATCATGTTTAAATAGAGAAGTTTTGAATA  646

seq1  AAACCCAAATTGGCCTATAAATCATTTTAAATATTGACAAAGGAGTGTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAATTGGCCTATAAATCATTTTAAATATTGACAAAGGAGTGTTG  696

seq1  AAAATATACATGATATCAAAAATCATAAACTAAAATATCACTTGTCACTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACATGATATCAAAAATCATAAACTAAAATATCACTTGTCACTG  746

seq1  AACAATATTTTAATACTATCCAGCAAAAATATAGGTAGATCTGTAAATAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTTTAATACTATCCAGCAAAAATATAGGTAGATCTGTAAATAA  796

seq1  CATATAAGCATTCAATAAAGCCTAAAGACTGTAAGAAAACAATGGATTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGCATTCAATAAAGCCTAAAGACTGTAAGAAAACAATGGATTTA  846

seq1  TTTATTCTTCATTTGACATTTTTCATAGTAAGTGTTTTAAAATGCTATTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTCATTTGACATTTTTCATAGTAAGTGTTTTAAAATGCTATTA  896

seq1  TCTCCTCTCAGTGTAAAGGCAGACAAATTTTTCTTTCTTTCTTTTTTTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCAGTGTAAAGGCAGACAAATTTTTCTTTCTTTCTTTTTTTAA  946

seq1  TGTAAAGGGAAAATCCCATATAACTTACCTTTGAAAGGCTAGGAAACCAT  993
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTAAAGGGAAAATCCCATATAACTTACCTTCGAAAGGCTAGGAAACCAT  996

seq1  CCACCAGTTGCTCCACACATTTCAGAAGGCAGCTGTGAAGAAGAAAAAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTTGCTCCACACATTTCAGAAGGCAGCTGTGAAGAAGAAAAAGT  1046

seq1  CCTCAGTAGAAAACCCCTACCCTGAATTC  1072
      ||||||||||||||||||||| |||||||
seq2  CCTCAGTAGAAAACCCCTACCATGAATTC  1075

seq1: chr5_17212866_17213879
seq2: B6Ng01-097A23.g_66_1093

seq1  GAATTCAGTGTCTATTCTTTAAAAAAAAAAAAAAAGTTAGGCTTTTAAGG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCTATTCTTTAAAAAAAAAAAAAAAGTTAGGCTTTTAAGG  50

seq1  AGGTGATAAAGGCCACTCAATCAACCTTGTGACCTCCCTGAGCACAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAAAGGCCACTCAATCAACCTTGTGACCTCCCTGAGCACAGGTG  100

seq1  CCTATGTTACTGGGATACACAAGGAGGAAGCAGGCTTGACTAGAATTCTT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTACTGGGATACACAAGGAGGAAGCAGGCTTGACTAGAATTCTT  150

seq1  TCAGGAGTTAGCAACCACTGAGAGGGAGGGACTAGACCTGATTGAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTTAGCAACCACTGAGAGGGAGGGACTAGACCTGATTGAGGAGG  200

seq1  CAGAGTTTCTCCAATCCAATGGCAGGCACAGCTTGTTTCCAGGGAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTCCAATCCAATGGCAGGCACAGCTTGTTTCCAGGGAAACCT  250

seq1  GAGGACTTCAGTTAAAACGCAGGCAGGGGGATAAATACCAATGATGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTCAGTTAAAACGCAGGCAGGGGGATAAATACCAATGATGACTC  300

seq1  TGGTGACCTGCTGAGTAAAGAGCTATGCATCATCACTTGCTTGAGACAGC  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTGACCTGCTGAGTAAAGAGCTATGCATCGTCACTTGCTTGAGACAGC  350

seq1  CAGCACCTACTGTGTAATGCATGCAGACTCTGGGTTAGACAGAAGAGCTC  400
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCGCACCTACTGTGTAATGCATGCGGACTCTGGGTTAGACAGAAGAGCTC  400

seq1  GAAGGATTAGCGCTGTGATCCCTTGTATTACAATTTCTAAGAAATAAAAA  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAGGATTAGCGCTGTGATCCCTTGTATTACAATTTCTAAAAAATAAAAA  450

seq1  TAAAGAATCAGAAAGAATGCTTATTTGGGGGAAGTTTCTTTATATATTGA  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCATAAAGAATGCTTATTTGGGGGAAGTTTCTTTATATATTGA  500

seq1  ATAGAGAGGAAATTAAATAACAAATGCATATTAATGATTCTTCTGTTATC  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGGAAATTGAATAACAAATGCATATTAATGATTCTTCTGTTATC  550

seq1  TTTGTGTGTAAATTTGCATTATGGAAATCACTTCTAAAGTTTGTCTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTAAATTTGCATTATGGAAATCACTTCTAAAGTTTGTCTTGGT  600

seq1  AAATCACACATTTATGAGTGCTTT-AATCTATTCAGGGATCTACTATTCA  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATCACACATTTATGAGTGCTTTAAATCTATTCAGGGATCTACTATTCA  650

seq1  GGGATCTATTATCTACATAGTCTAGATGAAGAAGCTAGGTTCAATAAA-A  698
      ||||||||||||||||||| |||| |||||||||||||| |||||||| |
seq2  GGGATCTATTATCTACATAATCTATATGAAGAAGCTAGGGTCAATAAAGA  700

seq1  GACAGATAATTCAATATAGCCACAATTTG-GTAG-GTCAGATT-CATAGA  745
      ||||||||||||||||||||||||||||| ||||  |||||||  ||| |
seq2  GACAGATAATTCAATATAGCCACAATTTGAGTAGACTCAGATTGAATATA  750

seq1  GGTAAAGT-GGTCTCACCTT-CTGA-GGATACCTTATGTGCCAGAGC-AG  791
      || ||||| ||||||||||| |||| |||||||||||| |||| ||| | 
seq2  GGAAAAGTGGGTCTCACCTTACTGAGGGATACCTTATGAGCCATAGCAAA  800

seq1  GCGTGGT-TTTACATGA-TTTCTAT-AGTATGTT-TTTTAGTAAAAACTC  837
      ||||||| |||||| || ||||||| |||||||| ||||||||||| |||
seq2  GCGTGGTCTTTACAAGATTTTCTATAAGTATGTTCTTTTAGTAAAATCTC  850

seq1  AACCAAAATGGCCACATACCTTACCCAGGCTAGTTAACA-CAACAAAAGA  886
      |||| ||||||||||||||||||||| |||| | ||||| ||  ||||||
seq2  AACCGAAATGGCCACATACCTTACCCGGGCTCG-TAACATCACTAAAAGA  899

seq1  CTTCCTATTTGGGAATTTAGAGAGCATCTTTCAGCTCTG-TCTTCTATGC  935
      ||||||||| ||||||||||||||||  | ||||||||| ||||| ||||
seq2  CTTCCTATTGGGGAATTTAGAGAGCAGATATCAGCTCTGTTCTTC-ATGC  948

seq1  -GGCTAACTCTCCAAGGGGGTTTCATGCACAGTAGCTGG-AAGGACGCTA  983
       | |||  ||| | |||| ||||||||| |  || |||| |||||| || 
seq2  AGCCTACTTCTGC-AGGGAGTTTCATGCTCGATACCTGGAAAGGACACTT  997

seq1  GCAAGGCTATGTAGAAGTATTTAATAACGGG  1014
      |||||||||||||||||  ||||||||||||
seq2  GCAAGGCTATGTAGAAGATTTTAATAACGGG  1028