BAC Information

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BAC

Clone NameB6Ng01-097B22
Chromosome5 (Build37)
Map Location 22,081,019 - 22,217,656
singlet/doubletdoublet
Overlap geneLOC100042067, LOC671222
Upstream geneFbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232
Downstream geneLOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097B22.bB6Ng01-097B22.g
ACCDH907575DH907576
length1,053653
definitionDH907575|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B22, 5' end.DH907576|Mus musculus domesticus DNA, BAC clone: B6Ng01-097B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,216,608 - 22,217,656)(22,081,019 - 22,081,670)
sequence
gaattctcatcaatgggctgtgtggattacttgagtgactttgtggacat
ttccttgacagagtgcactgggtcctccatgagggattgggagggctcat
cctggaaggacttcgagggttccttcttgaaggactgcaaggactttttc
ttgatgggctgggtgaggtccttgagtgactgtgagaggtcctccttgaa
ggaccgcatgggatccattatgagggactgtgagtgctcatcttgaagga
cttcgtgggttcccccttctgggactacgaggtcttctccttgtttggct
gtgtggggtccgtgagtgactgtgagggctcttctttgaaggacttcgag
tgttcctccctgaaggactgagaggatttctccttgatgggctgtgtggg
atctttgagtgattgtgagggcccctacttgagggactgcatggggtcct
ccatgaggaactgtgagggctcatccttgaggacttcaaacattctgcct
tgagggactacaagggcttctccttgatgtgctgtgtggggtccttgagt
gactgtgagggctactttttgagggactgcatagggtcctccatgaagga
ctgtgagggctcatccttgaaggacttcgagagttctgtcttgaggaact
gtcttgagggcttctacctgaagtaattcaaaggttactatgtgaacgat
tctaatggctactctgagagggattttgagggtgcctcctagagggacat
tgagggttccatcttgaaagattgtaaagaacttttttgatgggctctgt
gggggtccttgtgtgaccatgagggctcctccttgagggttctgcatggg
gatcctccatgagggactgtgagacttcatctttgaaagacttcatttgt
tctgccttgaggtcctgtgagggtcttcacctaagtacttcgaaggttac
tctgtggagtgactgtaatggttacttctaggagagaatttcaggtgggc
ctctttaagggacttcgaggggttcttcttgaagacagtgagccattaat
ttt
gaattcactatttggtacatcaccacactgccaaatatgcaaagatcatt
aaaccaggaagaaaaaaccaggcagacatctaactgaagtggctattagt
agactgctccctaagcaatgactatcagaagaaaggattttttaaagtag
agagagaaaatgccctctcagactgtataaccagaagcaattcttccaaa
aatgacagaaaaataattatctttgatttaaaaaaaaaaaagactttttt
tattgttgttggttaccccccccccccacctcccgagacagggtttctct
gtgtagcccctggctgttctggaactcactttgtagaccagactggcctc
caactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggt
gtgcgccaccacgcccggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag
accttgattttttaaaaaaagtttgttactgttgtgcttataaaaagata
aagagaagggtgtagtctatgcaggtgcagtcaggtatgggggagggggt
gccttggcaccccatgccaaggtatcccttccctttgagggaccatcccc
aagagtgaagttgctactacaatctaaatgatgactaaaaactgtcaccc
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_22216608_22217656
seq2: B6Ng01-097B22.b_45_1097 (reverse)

seq1  AAAAATAATTGCTCACTGTCCTTCAAGAAGGAACCCTCGAAGTCCCTCAA  50
      |||| |||| ||||||||| |||||||||| | |||||||||||||| ||
seq2  AAAATTAATGGCTCACTGT-CTTCAAGAAGAACCCCTCGAAGTCCCTTAA  49

seq1  GGA-GCCACCCTGAAAATCTCTCCTAG-AGTAACCATTACAGTCACT-CA  97
       || |||  ||||||| |||||||||| ||||||||||||||||||| ||
seq2  AGAGGCCCACCTGAAATTCTCTCCTAGAAGTAACCATTACAGTCACTCCA  99

seq1  CAGAGTAACCTTCGAAGTACTTTAGGTAGAAG-CCCTCACAGACCCTCAA  146
      |||||||||||||||||||| |||||| |||| |||||||||  ||||||
seq2  CAGAGTAACCTTCGAAGTAC-TTAGGT-GAAGACCCTCACAGGACCTCAA  147

seq1  GGCAGAACAATTGAAGTCTTTCAAAGATGAGTTCTCACAGTCCCTCATGG  196
      |||||||||| |||||||||||||||||||  ||||||||||||||||||
seq2  GGCAGAACAAATGAAGTCTTTCAAAGATGAAGTCTCACAGTCCCTCATGG  197

seq1  AGGATCCCCATGCAGAACCCTCAAGGAGGAGCCCTCATGGTCACACAAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCCATGCAGAACCCTCAAGGAGGAGCCCTCATGGTCACACAAGG  247

seq1  A-CCCCACAGAGCCCATC-AAAAAGTTC-TTACAATCTTTCAAGATGGAA  293
      | |||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  ACCCCCACAGAGCCCATCAAAAAAGTTCTTTACAATCTTTCAAGATGGAA  297

seq1  CCCTCAATGTCCCTCTAGGAGGCACCCTCAAAATCCCTCTCAGAGTAGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAATGTCCCTCTAGGAGGCACCCTCAAAATCCCTCTCAGAGTAGCC  347

seq1  ATTAGAATCGTTCACATAGTAACCTTTGAATTACTTCAGGTAGAAGCCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATCGTTCACATAGTAACCTTTGAATTACTTCAGGTAGAAGCCCT  397

seq1  CAAGACAGTTCCTCAAGACAGAACTCTCGAAGTCCTTCAAGGATGAGCCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGTTCCTCAAGACAGAACTCTCGAAGTCCTTCAAGGATGAGCCC  447

seq1  TCACAGTCCTTCATGGAGGACCCTATGCAGTCCCTCAAAAAGTAGCCCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCCTTCATGGAGGACCCTATGCAGTCCCTCAAAAAGTAGCCCTC  497

seq1  ACAGTCACTCAAGGACCCCACACAGCACATCAAGGAGAAGCCCTTGTAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACTCAAGGACCCCACACAGCACATCAAGGAGAAGCCCTTGTAGT  547

seq1  CCCTCAAGGCAGAATGTTTGAAGTCCTCAAGGATGAGCCCTCACAGTTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGGCAGAATGTTTGAAGTCCTCAAGGATGAGCCCTCACAGTTCC  597

seq1  TCATGGAGGACCCCATGCAGTCCCTCAAGTAGGGGCCCTCACAATCACTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGGACCCCATGCAGTCCCTCAAGTAGGGGCCCTCACAATCACTC  647

seq1  AAAGATCCCACACAGCCCATCAAGGAGAAATCCTCTCAGTCCTTCAGGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCCACACAGCCCATCAAGGAGAAATCCTCTCAGTCCTTCAGGGA  697

seq1  GGAACACTCGAAGTCCTTCAAAGAAGAGCCCTCACAGTCACTCACGGACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTCGAAGTCCTTCAAAGAAGAGCCCTCACAGTCACTCACGGACC  747

seq1  CCACACAGCCAAACAAGGAGAAGACCTCGTAGTCCCAGAAGGGGGAACCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGCCAAACAAGGAGAAGACCTCGTAGTCCCAGAAGGGGGAACCC  797

seq1  ACGAAGTCCTTCAAGATGAGCACTCACAGTCCCTCATAATGGATCCCATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTCCTTCAAGATGAGCACTCACAGTCCCTCATAATGGATCCCATG  847

seq1  CGGTCCTTCAAGGAGGACCTCTCACAGTCACTCAAGGACCTCACCCAGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCTTCAAGGAGGACCTCTCACAGTCACTCAAGGACCTCACCCAGCC  897

seq1  CATCAAGAAAAAGTCCTTGCAGTCCTTCAAGAAGGAACCCTCGAAGTCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAAAAGTCCTTGCAGTCCTTCAAGAAGGAACCCTCGAAGTCCT  947

seq1  TCCAGGATGAGCCCTCCCAATCCCTCATGGAGGACCCAGTGCACTCTGTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATGAGCCCTCCCAATCCCTCATGGAGGACCCAGTGCACTCTGTC  997

seq1  AAGGAAATGTCCACAAAGTCACTCAAGTAATCCACACAGCCCATTGATGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGTCCACAAAGTCACTCAAGTAATCCACACAGCCCATTGATGA  1047

seq1  GAATTC  1049
      ||||||
seq2  GAATTC  1053

seq1: chr5_22081019_22081670
seq2: B6Ng01-097B22.g_66_718

seq1  GAATTCACTATTTGGTACATCACCACACTGCCAAATATGCAAAGATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTGGTACATCACCACACTGCCAAATATGCAAAGATCATT  50

seq1  AAACCAGGAAGAAAAAACCAGGCAGACATCTAACTGAAGTGGCTATTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAAGAAAAAACCAGGCAGACATCTAACTGAAGTGGCTATTAGT  100

seq1  AGACTGCTCCCTAAGCAATGACTATCAGAAGAAAGGATTTTTTAAAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTCCCTAAGCAATGACTATCAGAAGAAAGGATTTTTTAAAGTAG  150

seq1  AGAGAGAAAATGCCCTCTCAGACTGTATAACCAGAAGCAATTCTTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAATGCCCTCTCAGACTGTATAACCAGAAGCAATTCTTCCAAA  200

seq1  AATGACAGAAAAATAATTATCTTTGATTTAAAAAAAAAAAAGACTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGAAAAATAATTATCTTTGATTTAAAAAAAAAAAAGACTTTTTT  250

seq1  TATTGTTGTTGGTTACCCCCCCCCCCCACCTCCCGAGACAGGGTTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTGGTTACCCCCCCCCCCCACCTCCCGAGACAGGGTTTCTCT  300

seq1  GTGTAGCCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGACTGGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGACTGGCCTC  350

seq1  CAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGT  400

seq1  GTGCGCCACCACGCCCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCACGCCCGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG  450

seq1  ACCTTGATTTTTTAAAAAAAGTTTGTTACTGTTGTGCTTATAAAAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATTTTTTAAAAAAAGTTTGTTACTGTTGTGCTTATAAAAAGATA  500

seq1  AAGAGAAGGGTGTAGTCTATGCAGGTGCAGTCAGGTATGGGGGAGGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGGTGTAGTCTATGCAGGTGCAGTCAGGTATGGGGGAGGGGGT  550

seq1  GCCTTGGCAGCCCATGCCAAGGTATCCCTTCCCCTTGAGGGACCAGCCAC  600
      ||||||||| ||||||||||||||||||||||| ||||||||||| || |
seq2  GCCTTGGCACCCCATGCCAAGGTATCCCTTCCCTTTGAGGGACCATCCCC  600

seq1  AAGACTGAAGTTGCTACTACAATCTATATGATGACT-AAAACTGTCACCT  649
      |||| ||||||||||||||||||||| ||||||||| |||||||||||| 
seq2  AAGAGTGAAGTTGCTACTACAATCTAAATGATGACTAAAAACTGTCACCC  650

seq1  CAT  652
      |||
seq2  CAT  653