BAC Information

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BAC

Clone NameB6Ng01-097F10
Chromosome5 (Build37)
Map Location 124,284,615 - 124,421,139
singlet/doubletdoublet
Overlap geneLOC100040005, Gpr109a, Gpr81, Denr, Ccdc62
Upstream geneRnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1
Downstream geneHip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097F10.bB6Ng01-097F10.g
ACCDH907741DH907742
length880946
definitionDH907741|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F10, 5' end.DH907742|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,420,262 - 124,421,139)(124,284,615 - 124,285,562)
sequence
gaattctcttcctgtctgcctggttgagtggctgcttaccttgcagctag
ctcagatgctacttctctagggaagcttccctgactcctccaccctgacc
tatgtctcagtatctcaccattctatttcataacaccagtcttccacgtg
actacttaagatctgtgttccctccctaccagaacgcaagcagggcttac
ttacccagttatctcccagggcctccaaagctacatggtgtgctcacaat
gaatttgtatgtgcgagggaccagggatggaatccagggccttgtgcatg
ctgggaaagtcgttctaaccatgagctctatttccagtcctctttctact
ttgttttgaagtcaggtctcactagagttgcttgagttggcactgaactc
cctctgtaccctaagtttgccatccttgggcctggcccccagtaggtagg
gttacagatcctgtctgtgttttaagcgttacctggaggagaacccacag
gtcctccttaactgggctgactcatgtgtgctgccacttgatagactcct
ctggaaggccaccccatcttaaccctggtgcatgtgtctggcatcttggt
tgattttattcattttgctcttcggaacgtgagggttactgattagaatc
ccggaggcttaagtggtgggccttcctgcaaggtgcaggaccaaaatcac
atcaaactgtcttttctttttgttttgttttttccgagtcagggtttctc
tgtttcagccctgggctgtcctggaactcactctgtagaccaggctggcc
tcccgagtgctgggataaaggtgtacgccaccaccgccggcttcacatca
ctgtcttaagggaaaggaagctacaggcat
gaattcctttgatgataaacagtgatgtggaagtgtaagcaataaacaaa
caaacaaaaaacaccttccctctccaatttgctttagtcatgtcacagca
atagtaactctaacttagactaaatctttgcccccttaagttgttttttc
ttagtcactcgattagagcatctccaagtgactaatacatcccatttccc
aaatccaggctcttggtttctgcaggatgtggcaccctccagttaagtcc
taaaagaatgagtctggagctggaaacatggtttagttgataaagtgttt
gccacgtaagcaggagggcctgagtttcaatccctagcgctcacactaaa
aagccaggctcagtggttcaaaggccatgatcccagccctggggaggtgg
agggaggccaatcccttgaacctgcttgccagtcactctggcctggagag
cagtgaggggtcagtgggacagctcagtacatagagcacgtgctgtgtaa
cctgatggcctgagttctgtctccagaacccatggtggaaggagagaact
ggctcccaaaagttttcttctgatctgatctccatatgtgtgctgtggta
tatgggtgcctgcacacacacacacacacacactcacacacacacactca
ctcacacacacactcacactaagagcaaagcagagccaatgaagatggca
cagaagataaaagatgcctggccccaaacttgagcacctgagttggatcc
ctggtggaagagagaactgattcctgcaaattgtcctctgagttcacact
tgtgttgtagtgtgcataacacgcagacacatagacacacacacacactc
ccacactcgcgaaagagagtttaatgggatactaaaaaataggttacagg
aaatgagagacacccagtgtcaggtgctgtcctggtacacattgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124420262_124421139
seq2: B6Ng01-097F10.b_45_924 (reverse)

seq1  ATGCCTGTAGCTTCCTGTCCCTTAAGACAGTTGATGTGAAGCCGGGCGGT  50
      |||||||||||||||| ||||||||||||| |||||||||||| ||||||
seq2  ATGCCTGTAGCTTCCTTTCCCTTAAGACAG-TGATGTGAAGCC-GGCGGT  48

seq1  GGTGGCGTACACCTTTAATCCCAGCACTCGGGAGGCCAGCCTGGTCTACA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTGGCGTACACCTTT-ATCCCAGCACTCGGGAGGCCAGCCTGGTCTACA  97

seq1  GAGTGAGTTCCAGGACAG-CCAGGGCTG-AACAGAGAAACCCTGACTCGG  148
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCCAGGGCTGAAACAGAGAAACCCTGACTCGG  147

seq1  -AAAAACAAAAC-AAAAGAAAAGACAG-TTGATGTGATTTTGGTCCTGCA  195
       ||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  AAAAAACAAAACAAAAAGAAAAGACAGTTTGATGTGATTTTGGTCCTGCA  197

seq1  CCTTGCAGGAAGGCCCACCACTTAAGCCTCCGGGATTCTAATCAGTAACC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGGAAGGCCCACCACTTAAGCCTCCGGGATTCTAATCAGTAACC  247

seq1  CTCACGTTCCGAAGAGCAAAATGAATAAAATCAACCAAGATGCCAGACAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTTCCGAAGAGCAAAATGAATAAAATCAACCAAGATGCCAGACAC  297

seq1  ATGCACCAGGGTTAAGATGGGGTGGCCTTCCAGAGGAGTCTATCAAGTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCAGGGTTAAGATGGGGTGGCCTTCCAGAGGAGTCTATCAAGTGG  347

seq1  CAGCACACATGAGTCAGCCCAGTTAAGGAGGACCTGTGGGTTCTCCTCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATGAGTCAGCCCAGTTAAGGAGGACCTGTGGGTTCTCCTCCA  397

seq1  GGTAACGCTTAAAACACAGACAGGATCTGTAACCCTACCTACTGGGGGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACGCTTAAAACACAGACAGGATCTGTAACCCTACCTACTGGGGGCC  447

seq1  AGGCCCAAGGATGGCAAACTTAGGGTACAGAGGGAGTTCAGTGCCAACTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGGATGGCAAACTTAGGGTACAGAGGGAGTTCAGTGCCAACTC  497

seq1  AAGCAACTCTAGTGAGACCTGACTTCAAAACAAAGTAGAAAGAGGACTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTCTAGTGAGACCTGACTTCAAAACAAAGTAGAAAGAGGACTGG  547

seq1  AAATAGAGCTCATGGTTAGAACGACTTTCCCAGCATGCACAAGGCCCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCTCATGGTTAGAACGACTTTCCCAGCATGCACAAGGCCCTGG  597

seq1  ATTCCATCCCTGGTCCCTCGCACATACAAATTCATTGTGAGCACACCATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCCCTGGTCCCTCGCACATACAAATTCATTGTGAGCACACCATG  647

seq1  TAGCTTTGGAGGCCCTGGGAGATAACTGGGTAAGTAAGCCCTGCTTGCGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGGAGGCCCTGGGAGATAACTGGGTAAGTAAGCCCTGCTTGCGT  697

seq1  TCTGGTAGGGAGGGAACACAGATCTTAAGTAGTCACGTGGAAGACTGGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGGGAGGGAACACAGATCTTAAGTAGTCACGTGGAAGACTGGTG  747

seq1  TTATGAAATAGAATGGTGAGATACTGAGACATAGGTCAGGGTGGAGGAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATAGAATGGTGAGATACTGAGACATAGGTCAGGGTGGAGGAGT  797

seq1  CAGGGAAGCTTCCCTAGAGAAGTAGCATCTGAGCTAGCTGCAAGGTAAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGCTTCCCTAGAGAAGTAGCATCTGAGCTAGCTGCAAGGTAAGC  847

seq1  AGCCACTCAACCAGGCAGACAGGAAGAGAATTC  878
      |||||||||||||||||||||||||||||||||
seq2  AGCCACTCAACCAGGCAGACAGGAAGAGAATTC  880

seq1: chr5_124284615_124285562
seq2: B6Ng01-097F10.g_70_1014

seq1  GAATTCCTTTGATGATAAACAGTGATGTGGAAGTGTAAGCAATAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGATGATAAACAGTGATGTGGAAGTGTAAGCAATAAACAAA  50

seq1  CAAACAAAAAACACCTTCCCTCTCCAATTTGCTTTAGTCATGTCACAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAACACCTTCCCTCTCCAATTTGCTTTAGTCATGTCACAGCA  100

seq1  ATAGTAACTCTAACTTAGACTAAATCTTTGCCCCCTTAAGTTGTTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTCTAACTTAGACTAAATCTTTGCCCCCTTAAGTTGTTTTTTC  150

seq1  TTAGTCACTCGATTAGAGCATCTCCAAGTGACTAATACATCCCATTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTCGATTAGAGCATCTCCAAGTGACTAATACATCCCATTTCCC  200

seq1  AAATCCAGGCTCTTGGTTTCTGCAGGATGTGGCACCCTCCAGTTAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGGCTCTTGGTTTCTGCAGGATGTGGCACCCTCCAGTTAAGTCC  250

seq1  TAAAAGAATGAGTCTGGAGCTGGAAACATGGTTTAGTTGATAAAGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATGAGTCTGGAGCTGGAAACATGGTTTAGTTGATAAAGTGTTT  300

seq1  GCCACGTAAGCAGGAGGGCCTGAGTTTCAATCCCTAGCGCTCACACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTAAGCAGGAGGGCCTGAGTTTCAATCCCTAGCGCTCACACTAAA  350

seq1  AAGCCAGGCTCAGTGGTTCAAAGGCCATGATCCCAGCCCTGGGGAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGCTCAGTGGTTCAAAGGCCATGATCCCAGCCCTGGGGAGGTGG  400

seq1  AGGGAGGCCAATCCCTTGAACCTGCTTGCCAGTCACTCTGGCCTGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCCAATCCCTTGAACCTGCTTGCCAGTCACTCTGGCCTGGAGAG  450

seq1  CAGTGAGGGGTCAGTGGGACAGCTCAGTACATAGAGCACGTGCTGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGGTCAGTGGGACAGCTCAGTACATAGAGCACGTGCTGTGTAA  500

seq1  CCTGATGGCCTGAGTTCTGTCTCCAGAACCCATGGTGGAAGGAGAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGCCTGAGTTCTGTCTCCAGAACCCATGGTGGAAGGAGAGAACT  550

seq1  GGCTCCCAAAAGTTTTCTTCTGATCTGATCTCCATATGTGTGCTGTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAAAAGTTTTCTTCTGATCTGATCTCCATATGTGTGCTGTGGTA  600

seq1  TATGGGTGCCTGCACACACACACACACACACACTCACACACACACACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGCCTGCACACACACACACACACACACTCACACACACACACTCA  650

seq1  CTCACACACACACTCACACTAAGAGCAAAGCAGAGCCAATGAAGATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACTCACACTAAGAGCAAAGCAGAGCCAATGAAGATGGCA  700

seq1  CAGAAGAT-AAAGATGCCTGGCCCCAAACCTGAGCACCTGAGTTGGATCC  749
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CAGAAGATAAAAGATGCCTGGCCCCAAACTTGAGCACCTGAGTTGGATCC  750

seq1  CTGGTGGAAGAAGAGAACTGATTCCTGCAAATTGTCCTCTGAGTTCCACA  799
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CTGGTGGAAG-AGAGAACTGATTCCTGCAAATTGTCCTCTGAGTT-CACA  798

seq1  CTTGTGTTGTAGTGTGCATAACACGCAGACACATAGACACACACACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTGTAGTGTGCATAACACGCAGACACATAGACACACACACACAC  848

seq1  ACACACACACACAGAAAGAGAGTTAAAT-GGATACATAAAAAAATAGGTA  898
       | ||||| | | ||||||||||| ||| ||||||   ||||||||||| 
seq2  TCCCACACTCGC-GAAAGAGAGTTTAATGGGATAC--TAAAAAATAGGTT  895

seq1  ACAAGAAATGAGAGACACCCAGTGTCAGGTGCTGTCCT-GCACACACTTG  947
      ||| |||||||||||||||||||||||||||||||||| | ||||| |||
seq2  ACAGGAAATGAGAGACACCCAGTGTCAGGTGCTGTCCTGGTACACA-TTG  944

seq1  C  948
      |
seq2  C  945