BAC Information

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BAC

Clone NameB6Ng01-097H11
Chromosome5 (Build37)
Map Location 53,205,836 - 53,361,546
singlet/doubletdoublet
Overlap geneZcchc4, Anapc4
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b
Downstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H11.bB6Ng01-097H11.g
ACCDH907837DH907838
length1,1361,142
definitionDH907837|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H11, 5' end.DH907838|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,205,836 - 53,206,982)(53,360,395 - 53,361,546)
sequence
gaattccaggacagccagggctatacaaagaaaccctgtctcaaaaaaaa
aaaaaaaaaaaaaaagaaaagaaaaagaaaagaaaagaaaagaaaagaaa
agcccgtcttcctgtcatggtttcccttgtttgtgcttcatttatttaat
agccagcttgtaagcctggtccattccagcttcctaggtgtatctttgct
tctcatccaaagcgttcatgccatcttatgtggaagttaggatccacccg
tcctgagctcctaactgtcgtggtattcttgaggaggatctaaagcagtg
gttttcaaacgtgagcatgtgaggaggacttgctaaaacacattgctggg
ccccactgccaaggtgtctgagatagtagatgtaggctgggtaggaactt
gcatttctaacaggatccatcccagtaatgttggtgttgccgatcccttt
ttgagtattatttatctaaagaaagacatgtttagtagctagggcgattc
acaacagcctgagagtgagtatggatactagcacacaggacaggggattt
aggcatataagacagtgcttggtggcctcactttgaaaataaatgctggc
atcacaagttcagatgtcgagggaggtcagtgtttggaagggtcactgct
gggtacagaaccaagggttcttcatccccatcttcctgcctcgtgtcagc
cagactgtggactaagtgactcctcagtgtagctctcaaagtcaagatcc
atgaccttttataggtaaaaaacattcctcagattgtagaaggctgggca
gagaccgcactttgatgtggccagctgaatagcaagctttttctctaaga
aagtggaacatctcagtgtcactagcatacatcttcaaacaagcctgtgg
ttagcatcagaaataaagctttaattacaaaatactttgttttgtagcct
ttagataagttagcgtcattcccattacccaccaacatggagtgtgacat
acacatctttcccttgtggaatggatgccactgctctagcggcctcctga
ggtggcggcgagtaaacttgcttaggatcttcttattccctactggagca
ctctagcctgatcttggcacagttgtttgttattgg
gaattcacagagatatgcctgcctctacttctgtcccacccacccccacc
ctcaccccagtactggtattaaaggcctggaacttgctgtgtagaccaac
tggcctcaaactcacagagatcgacctggctctgcctcttgagtgctggg
atgaaagtggtgggccatgatgcccagctacagatagctttcttacacag
ctacctcaagcccacctgcctagagatggcaccacccacagtgagctggt
ccctccaatatcaattagcaatcaaaaaaacacattatggacaagttcac
aggccaatctgatggagacagttctttaaggggagaggggtccctcttcc
caggtgtgtcaagttgacaaccaaggtgagccatcacattttgttttctg
ttttcttccttttggctttgcttggttagtttgagggttggtccaggact
tgatgctaacctccaccattgagctgtaccccgtgaacccttacttctca
gcttttcaatcagcaaatgggcactaatgtcagtaccacgtacatgcaga
tcagatgtgcagtaagcaaggagcacagctgtaagagccttaggtccagt
tgattgagatttctccaaatcattccaagtgaccctggaactgacaggga
ccactttgtgaggtggtttgaatgagaaaggccctagaggctcatatact
tagtcctcagttgggagaactatttgggaaagattaggagttatggcctc
agtggagaagatgtgtcactggcagtgggctttgaggttgcagaagccca
caccgccttcttgacctgcaacttgggttcagacgtgagttctcagcttc
tgcgccttgcaccatgcctgctcacacaacatttccccaccattgatggt
catagattaaccctgtgaaactgtaaataagcccccattaaatgcttgct
gcgtctcgagtcttctttacagtactagacagtaaactaagacagtggta
ctatgataagcttgctccaacactgcaatagaatttccaactattctaat
ctaacgcacacctcccacattaaatctggggtatttacattgaaggagac
atttcctctattttctcattggcttaggggtgtggaagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_53205836_53206982
seq2: B6Ng01-097H11.b_47_1182

seq1  GAATTCCAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTCAAAAAAAA  50

seq1  AAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAGAAAAGAAAAGAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAGAAAAGAAAAGAAAAGAAA  100

seq1  AGCCCGTCTTCCTGTCATGGTTTCCCTTGTTTGTGCTTCATTTATTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGTCTTCCTGTCATGGTTTCCCTTGTTTGTGCTTCATTTATTTAAT  150

seq1  AGCCAGCTTGTAAGCCTGGTCCATTCCAGCTTCCTAGGTGTATCTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTTGTAAGCCTGGTCCATTCCAGCTTCCTAGGTGTATCTTTGCT  200

seq1  TCTCATCCAAAGCGTTCATGCCATCTTATGTGGAAGTTAGGATCCACCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCAAAGCGTTCATGCCATCTTATGTGGAAGTTAGGATCCACCCG  250

seq1  TCCTGAGCTCCTAACTGTCGTGGTATTCTTGAGGAGGATCTAAAGCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCTCCTAACTGTCGTGGTATTCTTGAGGAGGATCTAAAGCAGTG  300

seq1  GTTTTCAAACGTGAGCATGTGAGGAGGACTTGCTAAAACACATTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAACGTGAGCATGTGAGGAGGACTTGCTAAAACACATTGCTGGG  350

seq1  CCCCACTGCCAAGGTGTCTGAGATAGTAGATGTAGGCTGGGTAGGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGCCAAGGTGTCTGAGATAGTAGATGTAGGCTGGGTAGGAACTT  400

seq1  GCATTTCTAACAGGATCCATCCCAGTAATGTTGGTGTTGCCGATCCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTAACAGGATCCATCCCAGTAATGTTGGTGTTGCCGATCCCTTT  450

seq1  TTGAGTATTATTTATCTAAAGAAAGACATGTTTAGTAGCTAGGGCGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATTATTTATCTAAAGAAAGACATGTTTAGTAGCTAGGGCGATTC  500

seq1  ACAACAGCCTGAGAGTGAGTATGGATACTAGCACACAGGACAGGGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCCTGAGAGTGAGTATGGATACTAGCACACAGGACAGGGGATTT  550

seq1  AGGCATATAAGACAGTGCTTGGTGGCCTCACTTTGAAAATAAATGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATAAGACAGTGCTTGGTGGCCTCACTTTGAAAATAAATGCTGGC  600

seq1  ATCACAAGTTCAGATGTCGAGGGAGGTCAGTGTTTGGAAGGGTCACTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTTCAGATGTCGAGGGAGGTCAGTGTTTGGAAGGGTCACTGCT  650

seq1  GGGTACAGAACCAAGGGTTCTTCATCCCCATCTTCCTGCCTCGTGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAGAACCAAGGGTTCTTCATCCCCATCTTCCTGCCTCGTGTCAGC  700

seq1  CAGACTGTGGACTAAGTGACTCCTCAGTGTAGCTCTCAAAGTCAAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGGACTAAGTGACTCCTCAGTGTAGCTCTCAAAGTCAAGATCC  750

seq1  ATGACCTTTTATAGGTAAAAAACATTCCTCAGATTGTAGAAGGCTGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTTTATAGGTAAAAAACATTCCTCAGATTGTAGAAGGCTGGGCA  800

seq1  GAGACCGCACTTTGATGTGGCCAGCTGAATAGCAAGC-TTTTCTCTAAGA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGACCGCACTTTGATGTGGCCAGCTGAATAGCAAGCTTTTTCTCTAAGA  850

seq1  AAGTGGAACATCTCAGTGTCACTAGCATACATCTTCAAACAAAGCCTGTG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGTGGAACATCTCAGTGTCACTAGCATACATCTTCAAAC-AAGCCTGTG  899

seq1  GTTAGCATCAGAAATAAAGCTTTAATTACAAAATACTTTGTTTTGTAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCAGAAATAAAGCTTTAATTACAAAATACTTTGTTTTGTAGCC  949

seq1  TTTTAGATAAAGTTAGCGTCATTCCCATTACCCACCAACAT-GAGTGTGA  998
       ||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  -TTTAGAT-AAGTTAGCGTCATTCCCATTACCCACCAACATGGAGTGTGA  997

seq1  CATAACACATCTTTCCCTTGTTGTAATGGAATGCCACTGCTCTAGGCGCC  1048
      ||| |||||||||||||||| || ||||| |||||||||||||||  |||
seq2  CAT-ACACATCTTTCCCTTG-TGGAATGG-ATGCCACTGCTCTAGCGGCC  1044

seq1  TCCTGAGGTTGGCGGCGAGTAAACTTGCTTTTAGGACTTTCTTATTCCCT  1098
      |||||||| |||||||||||||||||||  ||||||  ||||||||||||
seq2  TCCTGAGG-TGGCGGCGAGTAAACTTGC--TTAGGATCTTCTTATTCCCT  1091

seq1  ACTGGAGCACCTCAGCCTGGATCTTGGCATCAGTTTGTTTGTTTATTGG  1147
      ||||||||||   ||||| |||||||||| ||| ||||||| |||||||
seq2  ACTGGAGCACTCTAGCCT-GATCTTGGCA-CAG-TTGTTTG-TTATTGG  1136

seq1: chr5_53360395_53361546
seq2: B6Ng01-097H11.g_68_1209 (reverse)

seq1  AACTCTT-CACAGCACTTTAGCAAATGAGAAAATCGAGGAAATGTCTCTC  49
      ||||||| |||| | | | ||| ||||||||||| ||||||||||||| |
seq2  AACTCTTCCACA-CCCCTAAGCCAATGAGAAAATAGAGGAAATGTCTC-C  48

seq1  TTC-ATGTAAATTTCCCCAGATTTATATGTTGGGAGGTGT-CGTGTAGAG  97
      ||| ||||||| | ||||||||||| ||| |||||||||| ||| |||| 
seq2  TTCAATGTAAA-TACCCCAGATTTA-ATG-TGGGAGGTGTGCGT-TAGA-  93

seq1  TTAGAATAGTTGGGAAATCTAATGTGCAGTAGTTGGAGCAAGCTTATCAT  147
      ||||||||||||| || ||||   |||||| |||||||||||||||||||
seq2  TTAGAATAGTTGGAAATTCTA--TTGCAGT-GTTGGAGCAAGCTTATCAT  140

seq1  TGTTACAACTTGTCTTAG-TTACTGTCCTAGTTACTGTAAAG-AGACATC  195
       | ||| || |||||||| ||||||| |||| |||||||||| |||| ||
seq2  AG-TACCAC-TGTCTTAGTTTACTGT-CTAG-TACTGTAAAGAAGAC-TC  185

seq1  GAGACCGCAGCAAGCATTTAATTGGGGGCTTATTTACAGTTTCACAGGGT  245
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGA-CGCAGCAAGCATTTAA-TGGGGGCTTATTTACAGTTTCACAGGGT  233

seq1  TAATCTATGACCATC-ATGGTGGGG-AATGTTGTGGTGAGCAGGCATGGT  293
      ||||||||||||||| ||||||||| |||||||| |||||||||||||||
seq2  TAATCTATGACCATCAATGGTGGGGAAATGTTGT-GTGAGCAGGCATGGT  282

seq1  GC-AGGCGCAGAAGCTGAGAACTCACGTCTGAACCCCAAGTTGCAGGTCA  342
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAAGGCGCAGAAGCTGAGAACTCACGTCTGAA-CCCAAGTTGCAGGTCA  331

seq1  AG-AGGCGGTGTGGGCTTCTGCAACCTCAAAGCCCACTGCCAGTGACACA  391
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCGGTGTGGGCTTCTGCAACCTCAAAGCCCACTGCCAGTGACACA  381

seq1  TCTTCTCCACTGAGGCCATAACTCCTAATCTTTCCCAAATAGTTCTCCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCACTGAGGCCATAACTCCTAATCTTTCCCAAATAGTTCTCCCA  431

seq1  ACTGAGGACTAAGTATATGAGCCTCTAGGGCCTTTCTCATTCAAACCACC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGACTAAGTATATGAGCCTCTAGGGCCTTTCTCATTCAAACCACC  481

seq1  TCACAAAGTGGTCCCTGTCAGTTCCAGGGTCACTTGGAATGATTTGGAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGTGGTCCCTGTCAGTTCCAGGGTCACTTGGAATGATTTGGAGA  531

seq1  AATCTCAATCAACTGGACCTAAGGCTCTTACAGCTGTGCTCCTTGCTTAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAATCAACTGGACCTAAGGCTCTTACAGCTGTGCTCCTTGCTTAC  581

seq1  TGCACATCTGATCTGCATGTACGTGGTACTGACATTAGTGCCCATTTGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTGATCTGCATGTACGTGGTACTGACATTAGTGCCCATTTGCT  631

seq1  GATTGAAAAGCTGAGAAGTAAGGGTTCACGGGGTACAGCTCAATGGTGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAAGCTGAGAAGTAAGGGTTCACGGGGTACAGCTCAATGGTGGA  681

seq1  GGTTAGCATCAAGTCCTGGACCAACCCTCAAACTAACCAAGCAAAGCCAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCATCAAGTCCTGGACCAACCCTCAAACTAACCAAGCAAAGCCAA  731

seq1  AAGGAAGAAAACAGAAAACAAAATGTGATGGCTCACCTTGGTTGTCAACT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAAAACAGAAAACAAAATGTGATGGCTCACCTTGGTTGTCAACT  781

seq1  TGACACACCTGGGAAGAGGGACCCCTCTCCCCTTAAAGAACTGTCTCCAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCTGGGAAGAGGGACCCCTCTCCCCTTAAAGAACTGTCTCCAT  831

seq1  CAGATTGGCCTGTGAACTTGTCCATAATGTGTTTTTTTGATTGCTAATTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGCCTGTGAACTTGTCCATAATGTGTTTTTTTGATTGCTAATTG  881

seq1  ATATTGGAGGGACCAGCTCACTGTGGGTGGTGCCATCTCTAGGCAGGTGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAGGGACCAGCTCACTGTGGGTGGTGCCATCTCTAGGCAGGTGG  931

seq1  GCTTGAGGTAGCTGTGTAAGAAAGCTATCTGTAGCTGGGCATCATGGCCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGTAGCTGTGTAAGAAAGCTATCTGTAGCTGGGCATCATGGCCC  981

seq1  ACCACTTTCATCCCAGCACTCAAGAGGCAGAGCCAGGTCGATCTCTGTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTCATCCCAGCACTCAAGAGGCAGAGCCAGGTCGATCTCTGTGA  1031

seq1  GTTTGAGGCCAGTTGGTCTACACAGCAAGTTCCAGGCCTTTAATACCAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGCCAGTTGGTCTACACAGCAAGTTCCAGGCCTTTAATACCAGT  1081

seq1  ACTGGGGTGAGGGTGGGGGTGGGTGGGACAGAAGTAGAGGCAGGCATATC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTGAGGGTGGGGGTGGGTGGGACAGAAGTAGAGGCAGGCATATC  1131

seq1  TCTGTGAATTC  1152
      |||||||||||
seq2  TCTGTGAATTC  1142