BAC Information

Click to search

BAC

Clone NameB6Ng01-097I05
Chromosome5 (Build37)
Map Location 40,426,869 - 40,597,257
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097I05.bB6Ng01-097I05.g
ACCDH907873DH907874
length1,0281,141
definitionDH907873|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I05, 5' end.DH907874|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,426,869 - 40,427,506)(40,596,097 - 40,597,257)
sequence
gaattctaggccttggagttattcacttttgcataatagaagttatattt
tattgaagtgtggaaagtttgatgagactgtgttttactgtaaaaactca
gaaatcatttggacaatttttacaggcaggctaatgaagagatgcaagcc
cctggccatcattaagaacctaggtctggggtgccttgcccgcggagtct
acagacacctgcaaggagccacacaggatccctcttgggatcctaagacc
tctggtgagtggaacacagcatttgctccaatccaatctagagagacctc
aaactgcattaagtagggaaacagataacccggcctgatgaggggcacaa
gtcccttccggtccactccagcaccagggttccttgcgtgcggagtttcc
agacacccccaaggtcctcacaggaccgtccacaggatcttaagacctct
ggtgagtggaggcaggttcgaataccagatatctgggcaccttccatgca
acaagagagcttgcaggcagagaatactctgaccactaagctaaggagaa
atctagtctcccaggtctgctgatagaggataacagactcacctgaggaa
caagctctaaccagagacaactataacaactagcttcagagattaacaga
tggcaaaaggcaaacgtaagaatcctactaacagaaatcaagaccaatca
ccatcatcagaacacagcactcccaccccaactagtcctgggcaccccaa
cacacccgaaaagaaagaccctgatttaaaaacatatctcatgatgatgg
tagaggacatcaagaaggacttttaataactcactttaaaaaatacagga
gaacacagctaaacaggtagaagaccttaaagaggaagcacaaaattcct
taaagaattgcagaaacaggaccaaacaggtgatagaattgataaaaaca
tccaagacctaagaatgggagtagacacaataaagaaaacacaaagtgag
gcaatgctggaattagaaccctaaggaa
gaattcaactccctggaatcaagaaaactctgaaataacttcttgttcat
tgcctctgttcattctctacacatactcatgcaggcaattgtaattaaat
gcaaggtgccacacacaaactaaaataaggcatgaaattcttgcaaagag
ggatttggtgtgagagcagagagtatgagaagataatttggagaacatta
atcaaagaatatctaatacatgtatgaaaatgttaaggaaataaatattt
gaaataaaacaaaaccagaaaaaatattgaagatactatatctagtaatg
agttattattgtaagttcccctctgaagactattaacaagacgcaaatat
acagtccttggttttttttttaaattatatatttacttaaactaacaagc
ctatgaacaagtgcaaaactaacccttaaaaatgtgtcagatgaaaagtg
caagagtctgttctagtttgtttctttgtttcatttatattttgagtgtt
ctcaaaggagactcaacaaaattccatttgaaaagccatcagaatactag
atgaattaacaaactgtaggacacaaaaatgactttactttttgacctta
aacttgtagcataaaccaaaacccaaaaccaaccaaccaaacactctacc
tcaaaaaaaaaaaaaaaaaagaagtagaaactaaagttatatagcttact
aaagcaacaaaaaataagtgactgaagagttatgaatgattctaagtctt
tctgctcagatggaaggacacttgggactgagaagctcagaaccatgcag
ttctgaaggaaaaaggtgttccagtggaaggacaccctgagacatggagg
cccaggtggatcagtgtcccaagggagggtcatcctgagacagcgagctc
aggaccacacagctctgaaaggaagcctcctatgcagaggcattgctgag
aaggacactcctcgtcagctccttgggaacggtatctcagctggagctgg
caccgcagccttgttctcttggctctctcttctatctttgccattctctt
gggatcttctgatgaagagagtccacagacgaaattcatgaagaaattat
aggagttcagggaaggagggacaatcctgggaatggattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40426869_40427506
seq2: B6Ng01-097I05.b_46_683

seq1  GAATTCTAGGCCTTGGAGTTATTCACTTTTGCATAATAGAAGTTATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCTTGGAGTTATTCACTTTTGCATAATAGAAGTTATATTT  50

seq1  TATTGAAGTGTGGAAAGTTTGATGAGACTGTGTTTTACTGTAAAAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGTGTGGAAAGTTTGATGAGACTGTGTTTTACTGTAAAAACTCA  100

seq1  GAAATCATTTGGACAATTTTTACAGGCAGGCTAATGAAGAGATGCAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTTGGACAATTTTTACAGGCAGGCTAATGAAGAGATGCAAGCC  150

seq1  CCTGGCCATCATTAAGAACCTAGGTCTGGGGTGCCTTGCCCGCGGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCATCATTAAGAACCTAGGTCTGGGGTGCCTTGCCCGCGGAGTCT  200

seq1  ACAGACACCTGCAAGGAGCCACACAGGATCCCTCTTGGGATCCTAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCTGCAAGGAGCCACACAGGATCCCTCTTGGGATCCTAAGACC  250

seq1  TCTGGTGAGTGGAACACAGCATTTGCTCCAATCCAATCTAGAGAGACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGAGTGGAACACAGCATTTGCTCCAATCCAATCTAGAGAGACCTC  300

seq1  AAACTGCATTAAGTAGGGAAACAGATAACCCGGCCTGATGAGGGGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATTAAGTAGGGAAACAGATAACCCGGCCTGATGAGGGGCACAA  350

seq1  GTCCCTTCCGGTCCACTCCAGCACCAGGGTTCCTTGCGTGCGGAGTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCCGGTCCACTCCAGCACCAGGGTTCCTTGCGTGCGGAGTTTCC  400

seq1  AGACACCCCCAAGGTCCTCACAGGACCGTCCACAGGATCTTAAGACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCCCAAGGTCCTCACAGGACCGTCCACAGGATCTTAAGACCTCT  450

seq1  GGTGAGTGGAGGCAGGTTCGAATACCAGATATCTGGGCACCTTCCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGAGGCAGGTTCGAATACCAGATATCTGGGCACCTTCCATGCA  500

seq1  ACAAGAGAGCTTGCAGGCAGAGAATACTCTGACCACTAAGCTAAGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGCTTGCAGGCAGAGAATACTCTGACCACTAAGCTAAGGAGAA  550

seq1  ATCTAGTCTCCCAGGTCTGCTGATAGAGGATAACAGACTCACCTGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCTCCCAGGTCTGCTGATAGAGGATAACAGACTCACCTGAGGAA  600

seq1  CAAGCTCTAACCAGAGACAACTATAACAACTAGCTTCA  638
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTAACCAGAGACAACTATAACAACTAGCTTCA  638

seq1: chr5_40596097_40597257
seq2: B6Ng01-097I05.g_72_1212 (reverse)

seq1  GGAATCCA-TCCCAGGATTTGTCCCTCCTCTCCCTGGACCCTCCATAAAT  49
      |||||||| |||||||| ||||||||||| |||||| |  ||||   |||
seq2  GGAATCCATTCCCAGGA-TTGTCCCTCCT-TCCCTGAA--CTCCTATAAT  46

seq1  CTCTTTCATGAATTTTCTGTCTGGTGTGACTCTC-TCATCAGAAGACTCC  98
       || |||||||||||   |||| ||| ||||||| |||||||||||  ||
seq2  TTC-TTCATGAATTT--CGTCT-GTG-GACTCTCTTCATCAGAAGATCCC  91

seq1  AAGAAGAAAATGGCAAAGAATAGAAGAAGAGAAGCAAAGAAGGAACAGGG  148
         |||| |||||||||| ||||||| |||| ||| ||||  ||||| ||
seq2  ---AAGAGAATGGCAAAG-ATAGAAG-AGAG-AGCCAAGA--GAACAAGG  133

seq1  CTGCGGTGCCAGCT-CAGCTGAGGATACCGTTCCCCAGGAGCTGACGAGG  197
      |||||||||||||| ||||||| |||||||||||| ||||||||||||||
seq2  CTGCGGTGCCAGCTCCAGCTGA-GATACCGTTCCCAAGGAGCTGACGAGG  182

seq1  AGGTGTTCCTCCTCAGCAATGCCTCTGCATAGGAGGCTTCCTTTCAGAGC  247
      | ||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  A-GTG-TCCTTCTCAGCAATGCCTCTGCATAGGAGGCTTCCTTTCAGAGC  230

seq1  TGTGTGGTCCCTGAGCTCGCTTGTCTCAGGATGACCCTCCCTTGGGACAC  297
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TGTGTGGT-CCTGAGCTCGC-TGTCTCAGGATGACCCTCCCTTGGGACAC  278

seq1  TGATCCACCTGGGCCTCCATGTCTCAGGGTGTCCTTCCACTGGAACACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACCTGGGCCTCCATGTCTCAGGGTGTCCTTCCACTGGAACACCT  328

seq1  TTTTCCTTCAGAACTGCATGGTTCCTGAGCTTCTCAGTCCCAAGTGTCCT  397
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTCCTTCAGAACTGCATGGTT-CTGAGCTTCTCAGTCCCAAGTGTCCT  377

seq1  TCCATCTGAGCAGAAAGACTTAGAATCATTCATAACTCTTCAGTCACTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGAGCAGAAAGACTTAGAATCATTCATAACTCTTCAGTCACTTA  427

seq1  TTTTTTGTTGCTTTAGTAAGCTATATAACTTTAGTTTCTACTTCTTTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGCTTTAGTAAGCTATATAACTTTAGTTTCTACTTCTTTTTT  477

seq1  TTTTTTTTTTTTGAGGTAGAGTGTTTGGTTGGTTGGTTTTGGGTTTTGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGAGGTAGAGTGTTTGGTTGGTTGGTTTTGGGTTTTGGT  527

seq1  TTATGCTACAAGTTTAAGGTCAAAAAGTAAAGTCATTTTTGTGTCCTACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTACAAGTTTAAGGTCAAAAAGTAAAGTCATTTTTGTGTCCTACA  577

seq1  GTTTGTTAATTCATCTAGTATTCTGATGGCTTTTCAAATGGAATTTTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAATTCATCTAGTATTCTGATGGCTTTTCAAATGGAATTTTGTT  627

seq1  GAGTCTCCTTTGAGAACACTCAAAATATAAATGAAACAAAGAAACAAACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCCTTTGAGAACACTCAAAATATAAATGAAACAAAGAAACAAACT  677

seq1  AGAACAGACTCTTGCACTTTTCATCTGACACATTTTTAAGGGTTAGTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGACTCTTGCACTTTTCATCTGACACATTTTTAAGGGTTAGTTTT  727

seq1  GCACTTGTTCATAGGCTTGTTAGTTTAAGTAAATATATAATTTAAAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTTCATAGGCTTGTTAGTTTAAGTAAATATATAATTTAAAAAAA  777

seq1  AAACCAAGGACTGTATATTTGCGTCTTGTTAATAGTCTTCAGAGGGGAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGACTGTATATTTGCGTCTTGTTAATAGTCTTCAGAGGGGAAC  827

seq1  TTACAATAATAACTCATTACTAGATATAGTATCTTCAATATTTTTTCTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAATAACTCATTACTAGATATAGTATCTTCAATATTTTTTCTGG  877

seq1  TTTTGTTTTATTTCAAATATTTATTTCCTTAACATTTTCATACATGTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATTTCAAATATTTATTTCCTTAACATTTTCATACATGTATT  927

seq1  AGATATTCTTTGATTAATGTTCTCCAAATTATCTTCTCATACTCTCTGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCTTTGATTAATGTTCTCCAAATTATCTTCTCATACTCTCTGCT  977

seq1  CTCACACCAAATCCCTCTTTGCAAGAATTTCATGCCTTATTTTAGTTTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCAAATCCCTCTTTGCAAGAATTTCATGCCTTATTTTAGTTTGT  1027

seq1  GTGTGGCACCTTGCATTTAATTACAATTGCCTGCATGAGTATGTGTAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCACCTTGCATTTAATTACAATTGCCTGCATGAGTATGTGTAGAG  1077

seq1  AATGAACAGAGGCAATGAACAAGAAGTTATTTCAGAGTTTTCTTGATTCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGAGGCAATGAACAAGAAGTTATTTCAGAGTTTTCTTGATTCC  1127

seq1  AGGGAGTTGAATTC  1161
      ||||||||||||||
seq2  AGGGAGTTGAATTC  1141