BAC Information

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BAC

Clone NameB6Ng01-097J12
Chromosome5 (Build37)
Map Location 46,814,340 - 46,962,825
singlet/doubletdoublet
Overlap genenone
Upstream geneQdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097J12.bB6Ng01-097J12.g
ACCDH907927DH907928
length1,0671,162
definitionDH907927|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J12, 5' end.DH907928|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,961,764 - 46,962,825)(46,814,340 - 46,815,504)
sequence
gaattcctatgaatatttacaccaaaacctcttagatgaatgcattttta
gtattgtgctacttagattctaacctacaaaccacaatcaatcaatatca
cctgagctcttgttagaactacagtatctccttctagtccatagaatcac
tatgtcagtgattcctacagttgttagaattaagatacagtgctctggtc
cacaatgtattacagaattactaatgatgtgagcaccattgatgaccttc
agaaacccactgagctgctcagcacttcctgtgtaatgcggaataagaca
tgcttgcaggctcctcgctgagccattctcttccagtttgccccatgtgg
aaggttgaagatttattagtaatataaaatcctataagcttttgtaaaat
cttatgggatagcacacatgtcacctctgatcataaaatatcatcttatg
atcccaaattcaattctaacataggcattctccaggatctcaacataacc
ccattgtttcagagctggtgcaggaaaggagaaattgtatttgatgtttg
aatactgagagaaggcagggagtacataagaaagcttttcaaacccatta
gtccatatggttaacatactgtaatttcaggactatttgaaaccttagcc
aacttactggcaatggagaaagaactttgatatagaaactaatagcacct
gaatggagaaaattcatgacttttcagtattgccttaatatgtcccataa
tcaatgacttttcagaacaattattattccatcttgcagcaggcaaaaca
taagttctattttatgaatgtccagagtcactgataaataagtaataaag
cctgaacgtgagtttccatttatccctggttctattccttgcccctggcc
actctgattttagcttagctctaagaaggaacatacttgagtttcagcag
acttctatgaaggctttatcataacttttctgagtctgttcccattgtta
ttttaaacccatatctaatctgctagactgttaggaatcatgggatcagt
ttattaaatggacctta
gaattccctttgaagtccttgtctccatgctgtatgaagaacaatatgga
ggctaggagaggtgagaaacatgtacagttctgaagatggttttgatatc
catagatgataaatgctacctctacagttgcatggcaatggccaagatac
ataattagcagaactgtgaaatgagagaggccgccatttcataaatgtct
tctgctttctttcagattcaaaatttatggtttaaaatatccattagtgc
ttgcacccatctgtctttttgagtgaggaggtagagtcctttaatgcttt
gtttaattttaggcatttctgactttcactgtgtacataagggaaaaaaa
tatcaaagtgatataggtgagtatgaaggttgtagtgaaaacataaaaca
acttcaagagaatcagaaaggatcattttatatgacaatttgtgatgatt
ttaatagaactttggcaccaacagcatacatagacgtgtgttttggttga
aaatgacttgttatattagaaaataacactatgatttcattgagcaaatt
gtttatgattattttataggtagtgagattttgaaaataccagagtgctt
taagtgaaataaggtatttcacttaatagtcaacttaaaagaaaaagaga
aataggtgtaatggtataggcgtggtctgtgcatatgctacagaggaggt
atagttcttttcatagtctgaggaagtctcagtatattttcttccaccac
tgaggcaagggcagctcatgctaggaaataatgtaatctcagagtgtgag
attctagatgaaatacattttaatacacttccaatgctctgccccttcag
tttctactccccttcttcccatttctgccctctttcctttttcctacccc
attaactttatgctgtctttctttcccttcattttattttattattatcc
ataatattatttaaaagattttatttattcattttatgtgcatgagtacc
ctgtatctgtttttaaatacaccagaaagagggatcagaattcaattacg
acagttatagccactatgtgtcctgggaattgaaccagaagtcctggaaa
agctgaacctctctccagcctttttatattttatactgagaaaattattc
ccaaaaactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46961764_46962825
seq2: B6Ng01-097J12.b_43_1100 (reverse)

seq1  TTTAATAAACTTGATTCCAATGATTCATAACAGTCTAGCAGATTAGATAT  50
      |||||||||| ||| ||| ||||||| |||||||||||||||||||||||
seq2  TTTAATAAAC-TGA-TCCCATGATTCCTAACAGTCTAGCAGATTAGATAT  48

seq1  TGGTTTTAAATTACAATTGGGAAACAAGACTCAGATAGTTTATGATTAAG  100
       ||||| |||| |||| ||||||   ||||||||| |  ||||||| |||
seq2  GGGTTTAAAATAACAA-TGGGAA--CAGACTCAGAAAAGTTATGATAAAG  95

seq1  CCTTCATAGAAGTCTGGCTGAAACTCAAGTATGTTTCCTTCTTAGAGCTA  150
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  CCTTCATAGAAGTCT-GCTGAAACTCAAGTATG-TTCCTTCTTAGAGCTA  143

seq1  AGCTAAAATCAGAGTGGCCAGGGGCAAGGAATAGAACCAGGGAT-AATGG  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTAAAATCAGAGTGGCCAGGGGCAAGGAATAGAACCAGGGATAAATGG  193

seq1  AAACTCACGTTCAGGCTTTATTACTTATTTATCAGTGACTCTGGACATTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACGTTCAGGCTTTATTACTTATTTATCAGTGACTCTGGACATTC  243

seq1  AT-ATATAGAACTTATGTTTTGCCTGCTGCAAGATGGAATAATAATTGTT  298
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGAACTTATGTTTTGCCTGCTGCAAGATGGAATAATAATTGTT  293

seq1  CTGAAAAGTCATTGATTATGGGACATATTAAGGCAATACTGAAAAGTCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTCATTGATTATGGGACATATTAAGGCAATACTGAAAAGTCAT  343

seq1  GAATTTTCTCCATTCAGGTGCTATTAGTTTCTATATC-AAGTTCTTTCTC  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTTTCTCCATTCAGGTGCTATTAGTTTCTATATCAAAGTTCTTTCTC  393

seq1  CATTGCCAGTAAGTTGGCTAAGGTTTCAAATAGTCCTGAAATTACAGTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCAGTAAGTTGGCTAAGGTTTCAAATAGTCCTGAAATTACAGTAT  443

seq1  GTTAACCATATGGACTAATGGGTTTGAAAAGCTTTCTTATGTACTCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCATATGGACTAATGGGTTTGAAAAGCTTTCTTATGTACTCCCTG  493

seq1  CCTTCTCTCAGTATTCAAACATCAAATACAATTTCTCCTTTCCTGCACCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCAGTATTCAAACATCAAATACAATTTCTCCTTTCCTGCACCA  543

seq1  GCTCTGAAACAATGGGGTTATGTTGAGATCCTGGAGAATGCCTATGTTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAAACAATGGGGTTATGTTGAGATCCTGGAGAATGCCTATGTTAG  593

seq1  AATTGAATTTGGGATCATAAGATGATATTTTATGATCAGAGGTGACATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTTGGGATCATAAGATGATATTTTATGATCAGAGGTGACATGT  643

seq1  GTGCTATCCCATAAGATTTTACAAAAGCTTATAGGATTTTATATTACTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATCCCATAAGATTTTACAAAAGCTTATAGGATTTTATATTACTAA  693

seq1  TAAATCTTCAACCTTCCACATGGGGCAAACTGGAAGAGAATGGCTCAGCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTCAACCTTCCACATGGGGCAAACTGGAAGAGAATGGCTCAGCG  743

seq1  AGGAGCCTGCAAGCATGTCTTATTCCGCATTACACAGGAAGTGCTGAGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGCAAGCATGTCTTATTCCGCATTACACAGGAAGTGCTGAGCA  793

seq1  GCTCAGTGGGTTTCTGAAGGTCATCAATGGTGCTCACATCATTAGTAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGTTTCTGAAGGTCATCAATGGTGCTCACATCATTAGTAATT  843

seq1  CTGTAATACATTGTGGACCAGAGCACTGTATCTTAATTCTAACAACTGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATACATTGTGGACCAGAGCACTGTATCTTAATTCTAACAACTGTA  893

seq1  GGAATCACTGACATAGTGATTCTATGGACTAGAAGGAGATACTGTAGTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACTGACATAGTGATTCTATGGACTAGAAGGAGATACTGTAGTTC  943

seq1  TAACAAGAGCTCAGGTGATATTGATTGATTGTGGTTTGTAGGTTAGAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAGCTCAGGTGATATTGATTGATTGTGGTTTGTAGGTTAGAATC  993

seq1  TAAGTAGCACAATACTAAAAATGCATTCATCTAAGAGGTTTTGGTGTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCACAATACTAAAAATGCATTCATCTAAGAGGTTTTGGTGTAAA  1043

seq1  TATTCATAGGAATTC  1062
      |||||||||||||||
seq2  TATTCATAGGAATTC  1058

seq1: chr5_46814340_46815504
seq2: B6Ng01-097J12.g_69_1230

seq1  GAATTCCCTTTGAAGTCCTTGTCTCCATGCTGTATGAAGAACAATATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTGAAGTCCTTGTCTCCATGCTGTATGAAGAACAATATGGA  50

seq1  GGCTAGGAGAGGTGAGAAACATGTACAGTTCTGAAGATGGTTTTGATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGAGAGGTGAGAAACATGTACAGTTCTGAAGATGGTTTTGATATC  100

seq1  CATAGATGATAAATGCTACCTCTACAGTTGCATGGCAATGGCCAAGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGATAAATGCTACCTCTACAGTTGCATGGCAATGGCCAAGATAC  150

seq1  ATAATTAGCAGAACTGTGAAATGAGAGAGGCCGCCATTTCATAAATGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGCAGAACTGTGAAATGAGAGAGGCCGCCATTTCATAAATGTCT  200

seq1  TCTGCTTTCTTTCAGATTCAAAATTTATGGTTTAAAATATCCATTAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCTTTCAGATTCAAAATTTATGGTTTAAAATATCCATTAGTGC  250

seq1  TTGCACCCATCTGTCTTTTTGAGTGAGGAGGTAGAGTCCTTTAATGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCATCTGTCTTTTTGAGTGAGGAGGTAGAGTCCTTTAATGCTTT  300

seq1  GTTTAATTTTAGGCATTTCTGACTTTCACTGTGTACATAAGGGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTTAGGCATTTCTGACTTTCACTGTGTACATAAGGGAAAAAAA  350

seq1  TATCAAAGTGATATAGGTGAGTATGAAGGTTGTAGTGAAAACATAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGTGATATAGGTGAGTATGAAGGTTGTAGTGAAAACATAAAACA  400

seq1  ACTTCAAGAGAATCAGAAAGGATCATTTTATATGACAATTTGTGATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGAGAATCAGAAAGGATCATTTTATATGACAATTTGTGATGATT  450

seq1  TTAATAGAACTTTGGCACCAACAGCATACATAGACGTGTGTTTTGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAACTTTGGCACCAACAGCATACATAGACGTGTGTTTTGGTTGA  500

seq1  AAATGACTTGTTATATTAGAAAATAACACTATGATTTCATTGAGCAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTGTTATATTAGAAAATAACACTATGATTTCATTGAGCAAATT  550

seq1  GTTTATGATTATTTTATAGGTAGTGAGATTTTGAAAATACCAGAGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGATTATTTTATAGGTAGTGAGATTTTGAAAATACCAGAGTGCTT  600

seq1  TAAGTGAAATAAGGTATTTCACTTAATAGTCAACTTAAAAGAAAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAATAAGGTATTTCACTTAATAGTCAACTTAAAAGAAAAAGAGA  650

seq1  AATAGGTGTAATGGTATAGGCGTGGTCTGTGCATATGCTACAGAGGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGTAATGGTATAGGCGTGGTCTGTGCATATGCTACAGAGGAGGT  700

seq1  ATAGTTCTTTTCATAGTCTGAGGAAGTCTCAGTATATTTTCTTCCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTTTCATAGTCTGAGGAAGTCTCAGTATATTTTCTTCCACCAC  750

seq1  TGAGGCAAGGGCAGCTCATGCTAGGAAATAATGTAATCTCAGAGTGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAGGGCAGCTCATGCTAGGAAATAATGTAATCTCAGAGTGTGAG  800

seq1  ATTCTAGAATGAAATACA-TTTAATACACTTCCAATGCTCTGCCCCTTCA  849
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  ATTCTAG-ATGAAATACATTTTAATACACTTCCAATGCTCTGCCCCTTCA  849

seq1  GTTTCTACTCCCCTTCTTCCCATTTCTGCCCTC-TTCCTTTTTCCTACCC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTCTACTCCCCTTCTTCCCATTTCTGCCCTCTTTCCTTTTTCCTACCC  899

seq1  CATTAACTTTATGCTGTCTTTCTTT-CCTTCATTTTTATTTTATTATTAT  947
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  CATTAACTTTATGCTGTCTTTCTTTCCCTTCA-TTTTATTTTATTATTAT  948

seq1  CATTATTATTATTTAAAAGA-TTTATTTATTCATTTTATGTGCATGAGTA  996
      |  || |||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATAATATTATTTAAAAGATTTTATTTATTCATTTTATGTGCATGAGTA  998

seq1  CACTGTATCTGTTTTTAAATACACCAGAAGAGGGGATCAG-ATACCATTA  1045
      | |||||||||||||||||||||||||||   |||||||| || | ||||
seq2  CCCTGTATCTGTTTTTAAATACACCAGAAAGAGGGATCAGAATTCAATTA  1048

seq1  CAGACAGTTATGAGCCACTATGTGGTCCTGGGAATTGAACCCAGGATGTC  1095
      | ||||||||| ||||||||||| ||||||||||||||| |||| |   |
seq2  C-GACAGTTAT-AGCCACTATGT-GTCCTGGGAATTGAA-CCAGAAGTCC  1094

seq1  TGGAAAAGCTGAGCCATCTCTCCAGCCTTTTTAAAATTTTTAATCTGAGA  1145
      |||||||||||| || ||||||||||||||||| | ||| || |  || |
seq2  TGGAAAAGCTGAACC-TCTCTCCAGCCTTTTTATATTTTATACTGAGAAA  1143

seq1  ATTTTACTCATAAAACTATT  1165
      ||| | | || |||||||||
seq2  ATTATTCCCA-AAAACTATT  1162