BAC Information

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BAC

Clone NameB6Ng01-097O17
Chromosome5 (Build37)
Map Location 138,539,735 - 138,645,579
singlet/doubletdoublet
Overlap geneZkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454
Upstream geneSerpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c
Downstream geneBC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097O17.bB6Ng01-097O17.g
ACCDH908162DH908163
length6811,123
definitionDH908162|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O17, 5' end.DH908163|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,644,904 - 138,645,579)(138,539,735 - 138,540,848)
sequence
gaattcaatgccagcctggtctacaaagtgagttccaggacagccagagc
tacacagagaaaccctgtctcgaaaggaataaaacaaaacaaaaaagtaa
gaaatacctcctttgaggaagaaaatggaacgcacacagcatgatggcac
aattctttctctttacaacaggtgtctgcttcatgatgccttggcctgag
cccatgatccattggctcccacaacccagcactgtccctgagtatgtctc
agaatccatcaactgggactctctgcctcaagaactccccaacctgacca
gccttctctattggcctccaactggtgaagacagggatgatttttttggc
ctctaccagccccagaacctcctcatactgcttgaagggtccggcccaca
ccacctttactctgggaagtaacctagaagccatccttgtggctaaggat
caccgaggaagagctaaagttcacagtggagatctgtttcgggctcggct
gctgggcccagaattgagagcaggagtcccaggggaggtgaaggatctgg
agaatggcacttacctctttgtccttccccctgctctgggcttttttttt
tgttttctttttttgttttgttttgttttttttgtatagctctgtctgtc
cctggatctcactttgtagacccaggctggc
gaattcagaagaagttgagcagctttttcttctctgcagttggttcagtg
attatgataatcccatccataagtcacagattagctataaccagttcctc
tagtcacagcgttcaggagcctactgaacgagatggagcagaccctcttg
gagtctgcacttaaaagcaaaatgcagggccagtgagatggttcagtagg
tatagacacttgctgccaagcatagcaaccagtttgtccccagtattgaa
aggagggagtcaagtctcaagggttgtattctagcctccacacatgcatc
atggtaaaaacatgcacacacatacacacacacacacacacactcacact
aaatactaaaaaaatgaataaatgtttcaagattttgttagggttgtaag
agatggctcagtcccagctcttgggaggcagaggcaggcagatttctgag
ttcaaggccaacctggtggtctacagggtgagttccaggacagccagagc
tacacagagaaatcctgtcttgaacccccaccctacccccatctccccaa
aaagagatggctcagtagtgaagtagtagtagaccactgagtggtcttct
aatggacctgtgtccaattcccatcaccaatttgatacctcacaaccatc
tataactacagatccaggagatctagcgccctcttctgacctctacggac
atggtacatattcatctatatgcaggcaaaacacccatacaaacacaaaa
gtttttaattgttggatttttttgttttgtttttgagatggggcccagct
tctttttttagatgaagctggccttgaactcacagagatccaactgcctc
ttaactcccaagcacttgagatcaaaggagtgagccaccaccaccccagg
cggatttttttttccttcagtggggtatagcagtgttcagaaaattaaac
ttcaaaattttaatatggatggttgctaaaatgcagaggattaacttcta
catgtaaaattggttttctgggtaccttctgattaaaatccaaggaattg
ttcttttgctggaagtctcaactgtcagttgtgtagagtttaatccaatt
ttggtaaatggaatccccagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138644904_138645579
seq2: B6Ng01-097O17.b_47_727 (reverse)

seq1  GCCAGCCT-GGTCTACAAAGTGAGTTCCA-GGACAGACAGAGCTATAC-A  47
      |||||||| ||||||||||||||| |||| |||||||||||||||||| |
seq2  GCCAGCCTGGGTCTACAAAGTGAGATCCAGGGACAGACAGAGCTATACAA  50

seq1  AAAAACCAAAACAAAACAAAAAAAGAAAAC-AAAACAAAAGCCCAGAGCA  96
      ||||| |||||||||||||||||||||||| |||| ||||||||||||||
seq2  AAAAAACAAAACAAAACAAAAAAAGAAAACAAAAAAAAAAGCCCAGAGCA  100

seq1  GGGGGAAGGAC-AAGAGGTAAGTGCCATTCTCCAGATCCTTCACCTCCCC  145
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGGACAAAGAGGTAAGTGCCATTCTCCAGATCCTTCACCTCCCC  150

seq1  TGGGACTCCTGCTCTCAATTCTGGGCCCAGCAGCCGAGCCCGAAACAGAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCCTGCTCTCAATTCTGGGCCCAGCAGCCGAGCCCGAAACAGAT  200

seq1  CTCCACTGTGAACTTTAGCTCTTCCTCGGTGATCCTTAGCCACAAGGATG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGTGAACTTTAGCTCTTCCTCGGTGATCCTTAGCCACAAGGATG  250

seq1  GCTTCTAGGTTACTTCCCAGAGTAAAGGTGGTGTGGGCCGGACCCTTCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGGTTACTTCCCAGAGTAAAGGTGGTGTGGGCCGGACCCTTCAA  300

seq1  GCAGTATGAGGAGGTTCTGGGGCTGGTAGAGGCCAAAAAAATCATCCCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGAGGAGGTTCTGGGGCTGGTAGAGGCCAAAAAAATCATCCCTG  350

seq1  TCTTCACCAGTTGGAGGCCAATAGAGAAGGCTGGTCAGGTTGGGGAGTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCAGTTGGAGGCCAATAGAGAAGGCTGGTCAGGTTGGGGAGTTC  400

seq1  TTGAGGCAGAGAGTCCCAGTTGATGGATTCTGAGACATACTCAGGGACAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGAGAGTCCCAGTTGATGGATTCTGAGACATACTCAGGGACAG  450

seq1  TGCTGGGTTGTGGGAGCCAATGGATCATGGGCTCAGGCCAAGGCATCATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTTGTGGGAGCCAATGGATCATGGGCTCAGGCCAAGGCATCATG  500

seq1  AAGCAGACACCTGTTGTAAAGAGAAAGAATTGTGCCATCATGCTGTGTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACCTGTTGTAAAGAGAAAGAATTGTGCCATCATGCTGTGTGC  550

seq1  GTTCCATTTTCTTCCTCAAAGGAGGTATTTCTTACTTTTTTGTTTTGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTTCTTCCTCAAAGGAGGTATTTCTTACTTTTTTGTTTTGTTT  600

seq1  TATTCCTTTCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTCGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAAC  650

seq1  TCACTTTGTAGACCAGGCTGGCATTGAATTC  676
      |||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGCTGGCATTGAATTC  681

seq1: chr5_138539735_138540848
seq2: B6Ng01-097O17.g_68_1190

seq1  GAATTCAGAAGAAGTTGAGCAGCTTTTTCTTCTCTGCAGTTGGTTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAAGTTGAGCAGCTTTTTCTTCTCTGCAGTTGGTTCAGTG  50

seq1  ATTATGATAATCCCATCCATAAGTCACAGATTAGCTATAACCAGTTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATAATCCCATCCATAAGTCACAGATTAGCTATAACCAGTTCCTC  100

seq1  TAGTCACAGCGTTCAGGAGCCTACTGAACGAGATGGAGCAGACCCTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGCGTTCAGGAGCCTACTGAACGAGATGGAGCAGACCCTCTTG  150

seq1  GAGTCTGCACTTAAAAGCAAAATGCAGGGCCAGTGAGATGGTTCAGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCACTTAAAAGCAAAATGCAGGGCCAGTGAGATGGTTCAGTAGG  200

seq1  TATAGACACTTGCTGCCAAGCATAGCAACCAGTTTGTCCCCAGTATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACACTTGCTGCCAAGCATAGCAACCAGTTTGTCCCCAGTATTGAA  250

seq1  AGGAGGGAGTCAAGTCTCAAGGGTTGTATTCTAGCCTCCACACATGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGTCAAGTCTCAAGGGTTGTATTCTAGCCTCCACACATGCATC  300

seq1  ATGGTAAAAACATGCACACACATACACACACACACACACACACTCACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAAACATGCACACACATACACACACACACACACACACTCACACT  350

seq1  AAATACTAAAAAAATGAATAAATGTTTCAAGATTTTGTTAGGGTTGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAAAAAAATGAATAAATGTTTCAAGATTTTGTTAGGGTTGTAAG  400

seq1  AGATGGCTCAGTCCCAGCTCTTGGGAGGCAGAGGCAGGCAGATTTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTCCCAGCTCTTGGGAGGCAGAGGCAGGCAGATTTCTGAG  450

seq1  TTCAAGGCCAACCTGGTGGTCTACAGGGTGAGTTCCAGGACAGCCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCCAACCTGGTGGTCTACAGGGTGAGTTCCAGGACAGCCAGAGC  500

seq1  TACACAGAGAAATCCTGTCTTGAACCCCCACCCTACCCCCATCTCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAATCCTGTCTTGAACCCCCACCCTACCCCCATCTCCCCAA  550

seq1  AAAGAGATGGCTCAGTAGTGAAGTAGTAGTAGACCACTGAGTGGTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGGCTCAGTAGTGAAGTAGTAGTAGACCACTGAGTGGTCTTCT  600

seq1  AATGGACCTGTGTCCAATTCCCATCACCAATTTGATACCTCACAACCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCTGTGTCCAATTCCCATCACCAATTTGATACCTCACAACCATC  650

seq1  TATAACTACAGATCCAGGAGATCTAGCGCCCTCTTCTGACCTCTACGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTACAGATCCAGGAGATCTAGCGCCCTCTTCTGACCTCTACGGAC  700

seq1  ATGGTACATATTCATCTATATGCAGGCAAAACACCCATACAAACACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACATATTCATCTATATGCAGGCAAAACACCCATACAAACACAAAA  750

seq1  GTTTTTTAATTGTTGGATTTTTTTG-TTTGTTTTTGAGATGGGGCCCAGC  799
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  G-TTTTTAATTGTTGGATTTTTTTGTTTTGTTTTTGAGATGGGGCCCAGC  799

seq1  TTC-TTTTTTAGATGAAGCTGGCCTTGAACTCACAGAGATCCAACTGCCT  848
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTAGATGAAGCTGGCCTTGAACTCACAGAGATCCAACTGCCT  849

seq1  C-TAACTCCCAAGCAC-TGAGATCAAAGGAGTGAGCCACCAC--ACCCAG  894
      | |||||||||||||| |||||||||||||||||||||||||   |||||
seq2  CTTAACTCCCAAGCACTTGAGATCAAAGGAGTGAGCCACCACCACCCCAG  899

seq1  GCGGATTTTTTTTTTCCTTCAGTGGGGTATAGCAGTGTTCAGTAAAATTT  944
      ||||| ||||||||||||||||||||||||||||||||||||  ||| ||
seq2  GCGGA-TTTTTTTTTCCTTCAGTGGGGTATAGCAGTGTTCAG--AAAATT  946

seq1  AAACTTCAATATTTTAATAT-GATGGTTGCTAAAATGCAGA-GATTAAC-  991
      ||||||||| |||||||||| |||||||||||||||||||| ||||||| 
seq2  AAACTTCAAAATTTTAATATGGATGGTTGCTAAAATGCAGAGGATTAACT  996

seq1  TCTACATTGTAAAATTTGTTTTCT-GGTA-CTTCTGATTAAAATCTCAGG  1039
      |||||| ||||||||| ||||||| |||| |||||||||||||||  |||
seq2  TCTACA-TGTAAAATTGGTTTTCTGGGTACCTTCTGATTAAAATCCAAGG  1045

seq1  AATTGTTTCTTTGCTGTAAGTCTCAACTGTCAGTTGGGGAAGATTTTAT-  1088
      |||||||  ||||||| ||||||||||||||||||| | |   ||| || 
seq2  AATTGTTCTTTTGCTGGAAGTCTCAACTGTCAGTTGTGTAGAGTTTAATC  1095

seq1  CTATTTTGGTAA--TGAATCCCCAGATA  1114
      | ||||||||||   |||||||||||||
seq2  CAATTTTGGTAAATGGAATCCCCAGATA  1123