BAC Information

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BAC

Clone NameB6Ng01-097P03
Chromosome5 (Build37)
Map Location 48,551,522 - 48,681,192
singlet/doubletdoublet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097P03.bB6Ng01-097P03.g
ACCDH908177DH908178
length1,1541,193
definitionDH908177|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P03, 5' end.DH908178|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,551,522 - 48,552,683)(48,679,968 - 48,681,192)
sequence
gaattctaaacccacaaagaaaacatagattgtagccactcaccttgaaa
ctctaaactaatcttatgagaatccatttctctgtgatttttgggataac
ctatgtacacctaatttttgtgtgcatgaaactgttctctgttggactaa
tgaaatatttgcatattatatgaagcctgtacttttttttacacatagtt
agttatttggaactccatatatgtgaaaacagttcttttccatgacatat
atgagttaattaaatatgtgaacaaaaggatttttcttaagtaaacgata
catttagaaattaagaatttataccatggtaatatttacaggttagcatg
tttattttccatcaagaattacactttttgacttcccaaagattaaatat
ggataaatatccatccatcattactcagtactttctagagtagttcgtgc
aattacagatttatgatattcctagtcggactctaagagaggttaaactg
tggaggaaaataaaattaccagtaattaaatttactggcagctttgccat
ctaaagcaaatttattacttcgtagtaaaatatagttagagcactttcac
ataaagtgaatccatttttacatgatataggtattatacatcgccatttc
aatttatataattaaaatgatatcattggactctgaggttaatgggataa
tccactgagaaccatacgttgtgggcaataaaatgtagcactgcagtgtt
ggctctttcctgaagagctgatgcagtaattcagcactcctagatcatgt
ggtccccttaaaatagtgcagacatactgaaagcaaagaaggaatattcc
caaaagttgccatcaatttttagaacttaaaaaattactaaaatgatcta
tgactagtgattagcataagtacacttgaaattcttttcattctgtctgt
attttcctccattctggagtatactacatttaagagaggcttctaaagta
tcatgcctgcaatctcagcccatggattctggagaagatttcctgatttg
agcattagagcctttgctatatgggaatttcattactatgtgggcttggg
agtagccctgtctcttaccgaacaaaaggtatgcttggaagacactcagt
gggc
gaattctatttatgtaattttacagtgaagagaatactgatatggacctt
ttaaaaggtttacaaaattaatgatctcattgtctttgtttgttaggggg
gtattgtatcccaggaccaaaagagacgatgtctggctggaaaatagtca
acatttaagttaacatttcatgctgtcttttctagtatgcgatgcactgt
ggctgattttttaagaatgttgtagctatatattcttttacagttgaagc
ctgatggacaaccaacacttgaactgtaaaggctagctgagttgtcattg
atttggccatccatcacagtcacctccctccgggcccaggtgcaatgctc
agtaccctctggggtcatgataaggattgaaaaacctcattctaccactc
cctgaggggacgctaccattgaggactcacaaaagtagccattgagccac
ctaactttgccccattcaaatgggaacatacattttatttattaccatta
atatataatttaggttcactcccctcttctattacctgagtattatttaa
atttctgcacttaagtcggttataagaaaaccatgcatttttccaactgt
gtggattactatatgaaaacagttttaaaatttgaagctaataagaaaac
tggaactcctttctttgtgtactcatcagcacatatttacaataacattt
ttatattcgcacaatctaccagtttgaaaatactgcaacagtttaataag
gataaaaattcttgttctgttttctctttttttctccctctcccccctac
ccctctctctcttttggtgataattggcttcagttgttttacttaagaaa
tttaaatatcttgtacaatggaacaggaatctaggagcctataagaacag
cttgtcatctcatgttgatattgttatgctgggcacactcatccatagag
atgaggatatacaacgtactctctaaattcatttctgctgtcctttaact
aaagggagcagaagccagtggcattaacagtatttactccatgtgtaaga
gttttagaacatgctcttctagtttaaagtttccaattaaatgtatttga
tcaatgcttgaggccgattaatctggataatcatgattagactatggacg
tacttgagagactttctgtagcactggactactgctttctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48551522_48552683
seq2: B6Ng01-097P03.b_50_1203

seq1  GAATTCTAAACCCACAAAGAAAACATAGATTGTAGCCACTCACCTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCCACAAAGAAAACATAGATTGTAGCCACTCACCTTGAAA  50

seq1  CTCTAAACTAATCTTATGAGAATCCATTTCTCTGTGATTTTTGGGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACTAATCTTATGAGAATCCATTTCTCTGTGATTTTTGGGATAAC  100

seq1  CTATGTACACCTAATTTTTGTGTGCATGAAACTGTTCTCTGTTGGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACACCTAATTTTTGTGTGCATGAAACTGTTCTCTGTTGGACTAA  150

seq1  TGAAATATTTGCATATTATATGAAGCCTGTACTTTTTTTTACACATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTTGCATATTATATGAAGCCTGTACTTTTTTTTACACATAGTT  200

seq1  AGTTATTTGGAACTCCATATATGTGAAAACAGTTCTTTTCCATGACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGGAACTCCATATATGTGAAAACAGTTCTTTTCCATGACATAT  250

seq1  ATGAGTTAATTAAATATGTGAACAAAAGGATTTTTCTTAAGTAAACGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAATTAAATATGTGAACAAAAGGATTTTTCTTAAGTAAACGATA  300

seq1  CATTTAGAAATTAAGAATTTATACCATGGTAATATTTACAGGTTAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAAATTAAGAATTTATACCATGGTAATATTTACAGGTTAGCATG  350

seq1  TTTATTTTCCATCAAGAATTACACTTTTTGACTTCCCAAAGATTAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCCATCAAGAATTACACTTTTTGACTTCCCAAAGATTAAATAT  400

seq1  GGATAAATATCCATCCATCATTACTCAGTACTTTCTAGAGTAGTTCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATATCCATCCATCATTACTCAGTACTTTCTAGAGTAGTTCGTGC  450

seq1  AATTACAGATTTATGATATTCCTAGTCGGACTCTAAGAGAGGTTAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGATTTATGATATTCCTAGTCGGACTCTAAGAGAGGTTAAACTG  500

seq1  TGGAGGAAAATAAAATTACCAGTAATTAAATTTACTGGCAGCTTTGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAAATAAAATTACCAGTAATTAAATTTACTGGCAGCTTTGCCAT  550

seq1  CTAAAGCAAATTTATTACTTCGTAGTAAAATATAGTTAGAGCACTTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAAATTTATTACTTCGTAGTAAAATATAGTTAGAGCACTTTCAC  600

seq1  ATAAAGTGAATCCATTTTTACATGATATAGGTATTATACATCGCCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGAATCCATTTTTACATGATATAGGTATTATACATCGCCATTTC  650

seq1  AATTTATATAATTAAAATGATATCATTGGACTCTGAGGTTAATGGGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATAATTAAAATGATATCATTGGACTCTGAGGTTAATGGGATAA  700

seq1  TCCACTGAGAACCATACGTTGTGGGCAATAAAATGTAGCACTGCAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAGAACCATACGTTGTGGGCAATAAAATGTAGCACTGCAGTGTT  750

seq1  GGCTCTTTCCTGAAGAGCTGATGCAGTAATTCAGCACTCCTAGATCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTCCTGAAGAGCTGATGCAGTAATTCAGCACTCCTAGATCATGT  800

seq1  GGTCCCCTTAAAATAGTGCAGACATACTGAAAGCAAAGAAGGAATATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTTAAAATAGTGCAGACATACTGAAAGCAAAGAAGGAATATTCC  850

seq1  CAAAAGTTGCCATCAATTTTTAGAACTTAAAAAAATTACTAAAATGATCT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAAAGTTGCCATCAATTTTTAGAACTT-AAAAAATTACTAAAATGATCT  899

seq1  ATGACTAGTGATTAGCATAAGTACACTTGAAAATTCTTTTCATTCTGTCT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGACTAGTGATTAGCATAAGTACACTTG-AAATTCTTTTCATTCTGTCT  948

seq1  GTATTTTCCTCCATTCTGGAGTATACTACATTTAAGAGAGGCTTCTAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTATTTTCCTCCATTCTGGAGTATACTACATTTAAGAGAGGCTTCTAAA-  997

seq1  GTATCATGCCTGCAATCTCAGCCCATGGATTCTGGAGAAAGATTTTCCTG  1050
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  GTATCATGCCTGCAATCTCAGCCCATGGATTCTGGAG-AAGA-TTTCCTG  1045

seq1  AATTTGAAGCATTAGAGCCTTTGCTATATGGGAATTTCATTACTATGTGG  1100
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -ATTTG-AGCATTAGAGCCTTTGCTATATGGGAATTTCATTACTATGTGG  1093

seq1  GCTTTGGAGTAGCACTGTCTCTAACAGAACAAAAGTAAGGCTGAGAAGAC  1150
      |||| |||||||| |||||||| || |||||||||  | |||  ||||||
seq2  GCTTGGGAGTAGCCCTGTCTCTTACCGAACAAAAGGTATGCTTGGAAGAC  1143

seq1  AACTCAGTGGGC  1162
       |||||||||||
seq2  -ACTCAGTGGGC  1154

seq1: chr5_48679968_48681192
seq2: B6Ng01-097P03.g_68_1260 (reverse)

seq1  TCTAGAAAGCAGTGAGTCAAGATGCTACTGAGAGCACTGCCTCACAGAGT  50
      ||||||||||||| |||| || |||||| || |     | ||| || |||
seq2  TCTAGAAAGCAGT-AGTCCAG-TGCTACAGAAA-----GTCTCTCA-AGT  42

seq1  ACAGTTTCATTATGTCTATTTCAATGTATTTTATTCAGATAAATCTGCTT  100
      ||   | |||   ||||| |   |||    |||| ||||| |||| || |
seq2  AC--GTCCAT--AGTCTAAT--CATG---ATTATCCAGATTAATCGGCCT  83

seq1  CAAACCATTGATCAAAATACATTTATATGGAAA-ACTAAACTAGAAGAGC  149
      | || |||||||| |||||||||||  ||||||   ||||||||||||||
seq2  C-AAGCATTGATC-AAATACATTTAATTGGAAACTTTAAACTAGAAGAGC  131

seq1  ATGTTCTTAAAAACTCTAACACATGGAGTAAATACTGTTTAATGCCACTT  199
      |||||||  |||||||| ||||||||||||||||||| |||||||||| |
seq2  ATGTTCT--AAAACTCTTACACATGGAGTAAATACTG-TTAATGCCAC-T  177

seq1  GGCTTTCTGCTCCCTTTAGTTTAAAAGGACAGGCAGAAATGAATTTTTTA  249
      ||| |||||||||||||||||  |||||||| |||||||||||   ||||
seq2  GGC-TTCTGCTCCCTTTAGTT--AAAGGACA-GCAGAAATGAA---TTTA  220

seq1  GAGAGTACGTTGTTATTATCCTCATCTCTATGGATGAGTTGTGCCCAGCA  299
      |||||||||||||   |||||||||||||||||||||| |||||||||||
seq2  GAGAGTACGTTGT--ATATCCTCATCTCTATGGATGAG-TGTGCCCAGCA  267

seq1  TAACAATATCAACCTGAGATGACAAGCTGTTCTTATAGGCTCCTAGATTC  349
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAACAATATCAACATGAGATGACAAGCTGTTCTTATAGGCTCCTAGATTC  317

seq1  CTGTTCCATTGTACAAGATATTTAAATTTCTTAAGTAAAACAACTGAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCATTGTACAAGATATTTAAATTTCTTAAGTAAAACAACTGAAGC  367

seq1  CAATTATCACCAAAAGAGAGAGAGGGGCAGGGGGGAGAGGGAGAAAAAAA  449
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAATTATCACCAAAAGAGAGAGAGGGGTAGGGGGGAGAGGGAGAAAAAAA  417

seq1  GAGAAAACAGAACAAGAATTTTTATCCTTATTAAACTGTTGCAGTATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACAGAACAAGAATTTTTATCCTTATTAAACTGTTGCAGTATTTT  467

seq1  CAAACTGGTAGATTGTGCGAATATAAAAATGTTATTGTAAATATGTGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGTAGATTGTGCGAATATAAAAATGTTATTGTAAATATGTGCTG  517

seq1  ATGAGTACACAAAGAAAGGAGTTCCAGTTTTCTTATTAGCTTCAAATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACACAAAGAAAGGAGTTCCAGTTTTCTTATTAGCTTCAAATTTT  567

seq1  AAAACTGTTTTCATATAGTAATCCACACAGTTGGAAAAATGCATGGTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTTTCATATAGTAATCCACACAGTTGGAAAAATGCATGGTTTT  617

seq1  CTTATAACCGACTTAAGTGCAGAAATTTAAATAATACTCAGGTAATAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACCGACTTAAGTGCAGAAATTTAAATAATACTCAGGTAATAGAA  667

seq1  GAGGGGAGTGAACCTAAATTATATATTAATGGTAATAAATAAAATGTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGTGAACCTAAATTATATATTAATGGTAATAAATAAAATGTATG  717

seq1  TTCCCATTTGAATGGGGCAAAGTTAGGTGGCTCAATGGCTACTTTTGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTGAATGGGGCAAAGTTAGGTGGCTCAATGGCTACTTTTGTGA  767

seq1  GTCCTCAATGGTAGCGTCCCCTCAGGGAGTGGTAGAATGAGGTTTTTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAATGGTAGCGTCCCCTCAGGGAGTGGTAGAATGAGGTTTTTCAA  817

seq1  TCCTTATCATGACCCCAGAGGGTACTGAGCATTGCACCTGGGCCCGGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCATGACCCCAGAGGGTACTGAGCATTGCACCTGGGCCCGGAGG  867

seq1  GAGGTGACTGTGATGGATGGCCAAATCAATGACAACTCAGCTAGCCTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACTGTGATGGATGGCCAAATCAATGACAACTCAGCTAGCCTTTA  917

seq1  CAGTTCAAGTGTTGGTTGTCCATCAGGCTTCAACTGTAAAAGAATATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAGTGTTGGTTGTCCATCAGGCTTCAACTGTAAAAGAATATATA  967

seq1  GCTACAACATTCTTAAAAAATCAGCCACAGTGCATCGCATACTAGAAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACATTCTTAAAAAATCAGCCACAGTGCATCGCATACTAGAAAAG  1017

seq1  ACAGCATGAAATGTTAACTTAAATGTTGACTATTTTCCAGCCAGACATCG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGAAATGTTAACTTAAATGTTGACTATTTTCCAGCCAGACATCG  1067

seq1  TCTCTTTTGGTCCTGGGATACAATACCCCCCTAACAAACAAAGACAATGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGGTCCTGGGATACAATACCCCCCTAACAAACAAAGACAATGA  1117

seq1  GATCATTAATTTTGTAAACCTTTTAAAAGGTCCATATCAGTATTCTCTTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTAATTTTGTAAACCTTTTAAAAGGTCCATATCAGTATTCTCTTC  1167

seq1  ACTGTAAAATTACATAAATAGAATTC  1225
      ||||||||||||||||||||||||||
seq2  ACTGTAAAATTACATAAATAGAATTC  1193