BAC Information

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BAC

Clone NameB6Ng01-098K16
Chromosome5 (Build37)
Map Location 27,162,696 - 27,315,274
singlet/doubletdoublet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a, EG433862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098K16.bB6Ng01-098K16.g
ACCDH908694DH908695
length1,1641,112
definitionDH908694|Mus musculus domesticus DNA, BAC clone: B6Ng01-098K16, 5' end.DH908695|Mus musculus domesticus DNA, BAC clone: B6Ng01-098K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,162,696 - 27,163,348)(27,314,149 - 27,315,274)
sequence
gaattctcaagagaaaaatctcaaatggtagagaagcacttaaagaaatg
tccaaagtccttagtcttcaaggaaatgcaaatcaaaatgactctgagat
tctatctgacacccatcagaatggctaggataaaaaactcaagcaacagc
acatactggtaaggagcaaggggaacactcctccattgctggtgggagtg
caaacttgtacaaccactctggaaatcaatctggcagtttctcagaaaat
taggaatagttctacctgaagacccagttgtaccactcctgggcatctac
ccaaaagatgctccaccataccacaaggacacatgctccagtatgttcat
agcagctttaacaataatttccagtttcatccattttactgaaaacatca
taattgtacttttctttgcacttgattattattccatcatttaaattatt
acattctgttcatcaattggtaggcatctatgttgattctatttcctggc
tattttggcagcacggggcatggatgtccatgtgttcttcttgtaggaca
tagagccagttggttgtgtgcccagggtgggaatagccaggtcatatttc
tattctatttctagatttttgagaaaagtccatactgacttccaaaatgg
ctgtaccccccacaaacagtggataaaggttctccttgccccacattttc
accaacatttgtagtcatttatgtttctaattttggtcattctgatgggg
ttaagatggaactttaaagacattttccatggtggctaaagatgctgaac
agtgttgaaagggcttgctagccatttatatttctttctctttaaaatga
gaactttcattcggttccataactagttttaattagcttgtttgttttct
tgggttttttgtttgtattctctagacattactctatgcactaaaatagc
aaatactttctccgttcttgggttcccttcactagactatgattcttcat
tgtacagaggcatttagtttcacaaaatgcttgtctttctgaactgcaat
agcaccactctgaagagtttaacttgtctgtagtggactatactctatgt
ctgaaaagcttcagctcggtttagactctgggagaatcttagaatgtgtt
ggattttgtttgaa
gaattctaaatcttcagacagcatcagaagatagtcagggttcctcacgg
taaacagaactcctacacagggatcacacattacctgaggggtgttgtac
actgctgagggcaaatccagagccccagaatcttcacaggatggggaagg
gaatttaagggaactatttgtaaccagaataattgcaatctttgacaaga
agtaaaccaattcaatagggttgtcaatttacttttgacttatttgaatt
aagaaaaaaattcacttttcaattaatcagaattctcatcaaacaagaaa
tttaggagaaagtttttaatagaaagaaacagaataccaggaaaaaagta
agtttgaatctctgattagagcaaggcctcctggctagcatttgagaatc
atcacagtcatcgccatatctcgctaatcttgtatttccctcaacaatcc
agattattggtcacatggatgttctttcttgacacctcttgccaggacat
ggaagttacctcagacatgtatttcatggagctaaaattattataaaatt
tttgcaccatgttgcaatgacataaacttggagttagtggcccaggttga
attagagctcacatcattccctcatcttctttaaaaactacattaggatt
tccatgttaccctatgatgatggatgtcattaaggaaaaaaaaaaacctg
gctgtcgagtgtgtaaaggacttatacatgatcgacagaagtgcaaatta
gagcaactgacatggaactcaggatggagatgcctcaaaatcttcaacta
gaaggtctcttggatccagatgtggccgcttgggatatgcacacacccaa
aggaatgaatggtagcttactgtgaagagacctgcataccttgagttctt
ggagatctattcacaacagcaaagtcgtgaaatgatcagtgtgcccatca
cagatataggataaagaaactgtgttgcatggagtggatggaatctattc
accagaaaagaaataatgtttttacagaaaatggatggaacagaggccac
cacgctataattattcctcactcaataattacatgcattttctgaatcat
tgtatccaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27162696_27163348
seq2: B6Ng01-098K16.b_583_1210

seq1  CTTCTTGTAGGACATAGAGCCAGTTGGTTGTGTGCCCAGGGTGGGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTAGGACATAGAGCCAGTTGGTTGTGTGCCCAGGGTGGGAATAG  50

seq1  CCAGGTCATATTTCTATTCTATTTCTAGATTTTTGAGAAAAGTCCATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCATATTTCTATTCTATTTCTAGATTTTTGAGAAAAGTCCATACT  100

seq1  GACTTCCAAAATGGCTGTACCCCCCACAAACAGTGGATAAAGGTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAAAATGGCTGTACCCCCCACAAACAGTGGATAAAGGTTCTCCT  150

seq1  TGCCCCACATTTTCACCAACATTTGTAGTCATTTATGTTTCTAATTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACATTTTCACCAACATTTGTAGTCATTTATGTTTCTAATTTTGG  200

seq1  TCATTCTGATGGGGTTAAGATGGAACTTTAAAGACATTTTCCATGGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGATGGGGTTAAGATGGAACTTTAAAGACATTTTCCATGGTGGC  250

seq1  TAAAGATGCTGAACAGTGTTGAAAGGGCTTGCTAGCCATTTATATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGCTGAACAGTGTTGAAAGGGCTTGCTAGCCATTTATATTTCTT  300

seq1  TCTCTTTAAAATGAGAACTTTTCATTCGGTTCCATAACCTAGTTTTAATT  350
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TCTCTTTAAAATGAGAAC-TTTCATTCGGTTCCATAA-CTAGTTTTAATT  348

seq1  AGCTTGTTTGTTTTCTTGGGTTTTTTTGTTTTGTATTCTCTAGACATTAC  400
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  AGCTTGTTTGTTTTCTTGGGTTTTTT--GTTTGTATTCTCTAGACATTAC  396

seq1  TCTATTGCACTATAATAGCAAATACTTTCTTCCGTTCTGTGGGTTTCTCT  450
      |||| ||||||| |||||||||||||||| |||||||| |||| ||| ||
seq2  TCTA-TGCACTAAAATAGCAAATACTTTC-TCCGTTCT-TGGG-TTCCCT  442

seq1  TCACTAGACTATGATTTCTTCATTGTACAGAAGCCATTTAGTTTCACAAA  500
      |||||||||||||| ||||||||||||||| || ||||||||||||||||
seq2  TCACTAGACTATGA-TTCTTCATTGTACAG-AGGCATTTAGTTTCACAAA  490

seq1  ATGCTTGTCTTTCCTGAACTGCCATAGCACCACTCTG-AGAGTCTTAACC  549
      |||||||||||| ||||||||| |||||||||||||| ||||| |||| |
seq2  ATGCTTGTCTTT-CTGAACTGCAATAGCACCACTCTGAAGAGT-TTAA-C  537

seq1  TTGTCTGTAAGTTGACATATACTCTATGTCTTGAAAAGCTTCAGGGCGTC  599
      |||||||| ||| ||| ||||||||||||| |||||||||||||    ||
seq2  TTGTCTGT-AGTGGAC-TATACTCTATGTC-TGAAAAGCTTCAG---CTC  581

seq1  GGGGTTTTTAGACTTCTGTGAGATTCTTTATAGAGT-TGTTGAGTTTTGT  648
      ||    ||||||| |||| |||| |||   |||| | |||||  ||||||
seq2  GG----TTTAGAC-TCTGGGAGAATCT---TAGAATGTGTTGGATTTTGT  623

seq1  TTGAA  653
      |||||
seq2  TTGAA  628

seq1: chr5_27314149_27315274
seq2: B6Ng01-098K16.g_68_1179 (reverse)

seq1  TTTTTGAGATACAATGATTTCAGAAAATGCATGTTAATTATTTGGGTGAG  50
      |||||| |||||||||| ||||||||||||||| |||||| ||| |||||
seq2  TTTTTG-GATACAATGA-TTCAGAAAATGCATG-TAATTA-TTGAGTGAG  46

seq1  GATTACATTAATTAGCGTGGTGGCCTCTGGTTCCATCCATTTTCTTGTAA  100
      || || ||||  |||||||||||||||| ||||||||||||||| ||| |
seq2  GAATA-ATTA--TAGCGTGGTGGCCTCT-GTTCCATCCATTTTC-TGT-A  90

seq1  AAAACATTATTTCTTTTCTGGTTGAATAGGATTCCATCACTTCCATGCAA  150
      ||||||||||||||||||||| |||||| |||||||||   |||||||||
seq2  AAAACATTATTTCTTTTCTGG-TGAATA-GATTCCATCCACTCCATGCAA  138

seq1  CACAGTTTCTTTATCCTATTATCTGTTGATGGGCACACTGATCATTTCAC  200
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  CACAGTTTCTTTATCCTA-TATCTG-TGATGGGCACACTGATCATTTCAC  186

seq1  GACTTTGCTGTTGTGAATAGGATCTCCAAGAACTC-AGGTATGCAGGTCT  249
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GACTTTGCTGTTGTGAATA-GATCTCCAAGAACTCAAGGTATGCAGGTCT  235

seq1  CTTCACAGTAAGCTACCATTCATTCCTTTGGGTGTGTGCATAT-CCAAGC  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCACAGTAAGCTACCATTCATTCCTTTGGGTGTGTGCATATCCCAAGC  285

seq1  GGCCACATCTGGATCCAAGAGACCTTCTAGTTGAAGATTTTTGAGGCATC  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCCACATCTGGATCCAAGAGACCTTCTAGTTGAAGA-TTTTGAGGCATC  334

seq1  TCCATCCTGAGTTCCATGTCAGTTGCTCTAATTTGCACTTCTGTCGATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGAGTTCCATGTCAGTTGCTCTAATTTGCACTTCTGTCGATCA  384

seq1  TGTATAAGTCCTTTACACACTCGACAGCCAGGTTTTTTTTTTTCCTTAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGTCCTTTACACACTCGACAGCCAGGTTTTTTTTTTTCCTTAAT  434

seq1  GACATCCATCATCATAGGGTAACATGGAAATCCTAATGTAGTTTTTAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCATCATCATAGGGTAACATGGAAATCCTAATGTAGTTTTTAAAG  484

seq1  AAGATGAGGGAATGATGTGAGCTCTAATTCAACCTGGGCCACTAACTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGAATGATGTGAGCTCTAATTCAACCTGGGCCACTAACTCCA  534

seq1  AGTTTATGTCATTGCAACATGGTGCAAAAATTTTATAATAATTTTAGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGTCATTGCAACATGGTGCAAAAATTTTATAATAATTTTAGCTC  584

seq1  CATGAAATACATGTCTGAGGTAACTTCCATGTCCTGGCAAGAGGTGTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATACATGTCTGAGGTAACTTCCATGTCCTGGCAAGAGGTGTCAA  634

seq1  GAAAGAACATCCATGTGACCAATAATCTGGATTGTTGAGGGAAATACAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACATCCATGTGACCAATAATCTGGATTGTTGAGGGAAATACAAG  684

seq1  ATTAGCGAGATATGGCGATGACTGTGATGATTCTCAAATGCTAGCCAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCGAGATATGGCGATGACTGTGATGATTCTCAAATGCTAGCCAGGA  734

seq1  GGCCTTGCTCTAATCAGAGATTCAAACTTACTTTTTTCCTGGTATTCTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGCTCTAATCAGAGATTCAAACTTACTTTTTTCCTGGTATTCTGT  784

seq1  TTCTTTCTATTAAAAACTTTCTCCTAAATTTCTTGTTTGATGAGAATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTATTAAAAACTTTCTCCTAAATTTCTTGTTTGATGAGAATTCT  834

seq1  GATTAATTGAAAAGTGAATTTTTTTCTTAATTCAAATAAGTCAAAAGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTGAAAAGTGAATTTTTTTCTTAATTCAAATAAGTCAAAAGTAA  884

seq1  ATTGACAACCCTATTGAATTGGTTTACTTCTTGTCAAAGATTGCAATTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAACCCTATTGAATTGGTTTACTTCTTGTCAAAGATTGCAATTAT  934

seq1  TCTGGTTACAAATAGTTCCCTTAAATTCCCTTCCCCATCCTGTGAAGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTACAAATAGTTCCCTTAAATTCCCTTCCCCATCCTGTGAAGATT  984

seq1  CTGGGGCTCTGGATTTGCCCTCAGCAGTGTACAACACCCCTCAGGTAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTCTGGATTTGCCCTCAGCAGTGTACAACACCCCTCAGGTAATG  1034

seq1  TGTGATCCCTGTGTAGGAGTTCTGTTTACCGTGAGGAACCCTGACTATCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCCTGTGTAGGAGTTCTGTTTACCGTGAGGAACCCTGACTATCT  1084

seq1  TCTGATGCTGTCTGAAGATTTAGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  TCTGATGCTGTCTGAAGATTTAGAATTC  1112