BAC Information

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BAC

Clone NameB6Ng01-098K21
Chromosome5 (Build37)
Map Location 92,374,656 - 92,510,707
singlet/doubletdoublet
Overlap geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2
Upstream gene1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
Downstream geneVdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098K21.bB6Ng01-098K21.g
ACCDH908704DH908705
length8021,151
definitionDH908704|Mus musculus domesticus DNA, BAC clone: B6Ng01-098K21, 5' end.DH908705|Mus musculus domesticus DNA, BAC clone: B6Ng01-098K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,374,656 - 92,375,331)(92,509,543 - 92,510,707)
sequence
gaattcttaagaacctacagtctataaagactgaaaccagaaagaaatag
aaggctgaagagaccaaaagcaaggagagtaaatcaataatgtaagtact
cccatcagagactgcagaaactgcgcagcaggcaagggctcccacaatac
tggcccaaggccccagagggtccctaacatttgcatcagagagctcacaa
atgcctgtaaccccagttccaggattagagcccaagcctctggcctcagc
aggaacctgcattcacatgcagataccacacacacacacacacacacaca
cacacacacacacacacagtgtgtgtattagcttggcccagggagtggca
ctattgggtctgaccctgttggagtgggtgtggccttggaataagtgtgt
cactgtgggtgtgggctttaagaccctcatcctagctgtctggaagtcag
tattctgctagcagcattcagatgaagatgtagaactctcagctccttct
gcaccatgcctgccttgatgatagtagactgaacctctgaacctgtaagg
cagccccaattaaatcttggccttctgaatgttgccttgtcagtggtgtc
tattcacagcagtcaaaccctaagacacacagatagctagacatataata
cacataatttaccaaaaaaaaaaaaaaaaaaaaaaaaagatctcccatca
agaaaaaaatggcttcccagcagaattctaccaaatattttaagaaccaa
ccccaatctttctaaagtcttctgaagggggtgggggagaggagatgatg
at
gaattcattcgataatttagaagattaactttggctaagagtctgaatga
catgttcaaggcaccaatttgccttgctagtacccagacccaaccaccat
tagctgatgatgaaggcagtttcttgttcagccttggcctgtgaacctag
ggcaagtttactatctagactaaatgttaactcaatgacctgagtagccg
gattagtaggtgagttctggttttgaagaaattgttggcattgtttgtag
cagggcagtgtgggcagctctagcttgtattagagattaaaataccaaaa
ttttcagtatcagctactggaaatttacagatactcatagagtgccctta
gattcttgacagcagtttttcctttgttgcagaattgtcattacacatta
tgaatattagaagttattttctaaactgccttaatttgtcctgcttttct
gttgagtggacatgaggatgatgaatgacatctttgaacgttttacactg
aagcacaagttggattgcttgtgaacagaaagagggtggaacagagttga
gagtttggacctggttactacactggcagatgtgtgtttgatagctgata
aagcaaacctgtgtgttttccccaaactcttagcaaaaaattgggttttt
ttgtgccttggtttattttaatcatctctggattatctatccaaaaattg
ttactgtgctaacattggggatatttcttgctggattgcatgttgctgtc
ctgttattttctccctcccacccccaaagcaggcttgtcttttttttttt
tttttaattgtgtttatttggtttcttggggacaggatctttgtatagct
tgagctagcctggcatttgctgtgtgtctaggctggtctggaatttgtgg
gtatcctaccaagctagccctgaactttcagagtcctctgtccccagaaa
tcttattatcatataatgctgctgcatcaccaccctccccttccgtcttt
gagataggtcttaataggcccaactggcctggactccctttctatattac
atctgctagcttgactctgaagatccactgccttactggcagtgctggat
aacctgtgtgcaccacactggcccggaaacaacaaggtaataatgaaaac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_92374656_92375331
seq2: B6Ng01-098K21.b_173_850

seq1  GCAGCAGGCAAGGGCTCCCACAATACTGGCCCAAGGCCCCAGAGGGTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGCAAGGGCTCCCACAATACTGGCCCAAGGCCCCAGAGGGTCCC  50

seq1  TAACATTTGCATCAGAGAGCTCACAAATGCCTGTAACCCCAGTTCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCATCAGAGAGCTCACAAATGCCTGTAACCCCAGTTCCAGGA  100

seq1  TTAGAGCCCAAGCCTCTGGCCTCAGCAGGAACCTGCATTCACATGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCAAGCCTCTGGCCTCAGCAGGAACCTGCATTCACATGCAGAT  150

seq1  ACCACACACACACACACACACACACACACACACACACACACACAGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACACACACACACACACACACACACACACACACACACAGTGTGT  200

seq1  GTATTAGCTTGGCCCAGGGAGTGGCACTATTGGGTCTGACCCTGTTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGCTTGGCCCAGGGAGTGGCACTATTGGGTCTGACCCTGTTGGAG  250

seq1  TGGGTGTGGCCTTGGAATAAGTGTGTCACTGTGGGTGTGGGCTTTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGCCTTGGAATAAGTGTGTCACTGTGGGTGTGGGCTTTAAGAC  300

seq1  CCTCATCCTAGCTGTCTGGAAGTCAGTATTCTGCTAGCAGCATTCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCTAGCTGTCTGGAAGTCAGTATTCTGCTAGCAGCATTCAGATG  350

seq1  AAGATGTAGAACTCTCAGCTCCTTCTGCACCATGCCTGCCTTGATGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGAACTCTCAGCTCCTTCTGCACCATGCCTGCCTTGATGATAG  400

seq1  TAGACTGAACCTCTGAACCTGTAAGGCAGCCCCAATTAAATCTTGGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAACCTCTGAACCTGTAAGGCAGCCCCAATTAAATCTTGGCCTT  450

seq1  CTGAATGTTGCCTTGTCAGTGGTGTCTATTCACAGCAGTCAAACCCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTTGCCTTGTCAGTGGTGTCTATTCACAGCAGTCAAACCCTAAG  500

seq1  ACACACAGATAGCTAGACATATAATACACATAATTTACCAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGATAGCTAGACATATAATACACATAATTTACCAAAAAAAAAAA  550

seq1  AAAAAAAAAAAAAAGATCTCCCATCAAGAAAAAAATGGCTTCCCAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGATCTCCCATCAAGAAAAAAATGGCTTCCCAGCAGA  600

seq1  ATTCTACCAAATA-TTTAAGAACCAACCCCAATCTTTCTAAAGTCTTCTG  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCAAATATTTTAAGAACCAACCCCAATCTTTCTAAAGTCTTCTG  650

seq1  AAGGGGGT-GGGGAGAGGAGATGATGAT  676
      |||||||| |||||||||||||||||||
seq2  AAGGGGGTGGGGGAGAGGAGATGATGAT  678

seq1: chr5_92509543_92510707
seq2: B6Ng01-098K21.g_66_1216 (reverse)

seq1  TGTTTTCATTATTTACACTTGTTTGCTCCAGGCCAGGTGTGGTGGCACAC  50
      ||||||||||| |||| ||||||   ||| ||||| ||||||| ||||||
seq2  TGTTTTCATTA-TTAC-CTTGTTGTTTCCGGGCCA-GTGTGGT-GCACAC  46

seq1  AGGTTAATCCCAGCACTTGCAAGGTAGAGGCAGGTGGATCTCTCAGAGTT  100
      ||||||   ||||||||  ||  ||| ||||| |||||||| |||||| |
seq2  AGGTTA--TCCAGCACTGCCA--GTA-AGGCA-GTGGATCT-TCAGAG-T  88

seq1  CAAGGCTAGCCAGATGT-ATATAGAGAGTGAGTTCCAGGACAGTTGGGGC  149
      ||| ||||| ||||||| ||||||| || ||| |||||| |||||||| |
seq2  CAA-GCTAG-CAGATGTAATATAGAAAGGGAG-TCCAGGCCAGTTGGGCC  135

seq1  TATAAAGACCCTATCTCAAAGACGGGAGGGGAGGGTGGTGATGCAGCAGC  199
      ||| |||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TATTAAGA-CCTATCTCAAAGACGGAAGGGGAGGGTGGTGATGCAGCAGC  184

seq1  ATAATATGATAATAAGATTTCTGTGGACAGGAGACTCTGAAAGTTCAAGG  249
      || |||||||||||||||||||| ||||||  ||||||||||||||| ||
seq2  ATTATATGATAATAAGATTTCTGGGGACAGAGGACTCTGAAAGTTCAGGG  234

seq1  CTAGCTTGGTAGGATA-CCACAAATTCCAGACCAGCCTAGACACACAGCA  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAGCTTGGTAGGATACCCACAAATTCCAGACCAGCCTAGACACACAGCA  284

seq1  AATGCCAGGCTAGCTCAAGCTATACAAAGATCCTGTCCCCAAGAAACCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGCTAGCTCAAGCTATACAAAGATCCTGTCCCCAAGAAACCAA  334

seq1  ATAAACACAATTAAAAAAAAAAAAAAAAGACAAGCCTGCTTTGGGGGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAATTAAAAAAAAAAAAAAAAGACAAGCCTGCTTTGGGGGTGG  384

seq1  GAGGGAGAAAATAACAGGACAGCAACATGCAATCCAGCAAGAAATATCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAAAATAACAGGACAGCAACATGCAATCCAGCAAGAAATATCCC  434

seq1  CAATGTTAGCACAGTAACAATTTTTGGATAGATAATCCAGAGATGATTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTAGCACAGTAACAATTTTTGGATAGATAATCCAGAGATGATTAA  484

seq1  AATAAACCAAGGCACAAAAAAACCCAATTTTTTGCTAAGAGTTTGGGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAAGGCACAAAAAAACCCAATTTTTTGCTAAGAGTTTGGGGAA  534

seq1  AACACACAGGTTTACTTTATCAGCTATCAAACACACATCTGCCAGTGTAG  598
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACACACAGGTTTGCTTTATCAGCTATCAAACACACATCTGCCAGTGTAG  584

seq1  TAACCAGGTCCAAACTCTCAACTCTGTTCCACCCTCTTTCTGTTCACAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGTCCAAACTCTCAACTCTGTTCCACCCTCTTTCTGTTCACAAG  634

seq1  CAATCCAACTTGTGCTTCAGTGTAAAACGTTCAAAGATGTCATTCATCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAACTTGTGCTTCAGTGTAAAACGTTCAAAGATGTCATTCATCAT  684

seq1  CCTCATGTCCACTCAACAGAAAAGCAGGACAAATTAAGGCAGTTTAGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTCCACTCAACAGAAAAGCAGGACAAATTAAGGCAGTTTAGAAA  734

seq1  ATAACTTCTAATATTCATAATGTGTAATGACAATTCTGCAACAAAGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCTAATATTCATAATGTGTAATGACAATTCTGCAACAAAGGAAA  784

seq1  AACTGCTGTCAAGAATCTAAGGGCACTCTATGAGTATCTGTAAATTTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTCAAGAATCTAAGGGCACTCTATGAGTATCTGTAAATTTCCA  834

seq1  GTAGCTGATACTGAAAATTTTGGTATTTTAATCTCTAATACAAGCTAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGATACTGAAAATTTTGGTATTTTAATCTCTAATACAAGCTAGAG  884

seq1  CTGCCCACACTGCCCTGCTACAAACAATGCCAACAATTTCTTCAAAACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACACTGCCCTGCTACAAACAATGCCAACAATTTCTTCAAAACCA  934

seq1  GAACTCACCTACTAATCCGGCTACTCAGGTCATTGAGTTAACATTTAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACCTACTAATCCGGCTACTCAGGTCATTGAGTTAACATTTAGTC  984

seq1  TAGATAGTAAACTTGCCCTAGGTTCACAGGCCAAGGCTGAACAAGAAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTAAACTTGCCCTAGGTTCACAGGCCAAGGCTGAACAAGAAACT  1034

seq1  GCCTTCATCATCAGCTAATGGTGGTTGGGTCTGGGTACTAGCAAGGCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATCATCAGCTAATGGTGGTTGGGTCTGGGTACTAGCAAGGCAAA  1084

seq1  TTGGTGCCTTGAACATGTCATTCAGACTCTTAGCCAAAGTTAATCTTCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCTTGAACATGTCATTCAGACTCTTAGCCAAAGTTAATCTTCTA  1134

seq1  AATTATCGAATGAATTC  1165
      |||||||||||||||||
seq2  AATTATCGAATGAATTC  1151