BAC Information

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BAC

Clone NameB6Ng01-099F05
Chromosome5 (Build37)
Map Location 43,637,380 - 43,768,949
singlet/doubletdoublet
Overlap geneCpeb2
Upstream geneEG636612, LOC433883, EG665934
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099F05.bB6Ng01-099F05.g
ACCDH909150DH909151
length1,1411,144
definitionDH909150|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F05, 5' end.DH909151|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,637,380 - 43,638,527)(43,767,792 - 43,768,949)
sequence
gaattcattcaatttgttaggaaaggcatcttaggctctgaaaaagagag
aggattgaagtcctgcaagttttagggatcaccatgttagccagtttctg
tttctaactgggataatttatttttcatatgtattatgtcaagaaaggga
aaagaagctttgggaaaacatctccgcatagtataaagacataaggctgc
ctatgctgccgctgtgtagctatcaacaccgttagctgaacgctcctgct
tgatgtcttcctcctccgcctgctggctcatgccactggttcctgcttag
catgcattttctttctccacactttgggaccactgcctttatatgggggc
ggcgatgctggacctctacacagtctgtctaagcagagctatggcaaaca
aagtaagcagctggggtacctgatgtgattattgtttccccatctttccc
tccctcatgttcagggcagcgcccagtcttctcttgtctttttatctcgg
aaaatcatttccgctgcttaggacacagactgcatttgtgtttctcataa
aatgtctcctgaaaccagtatttgcttagtcttcctcaagagatctacca
atagacaggattcggagagtgcaaatttcaaaatgagctccttgttctct
ttctattgtaataagagattgtattacttgtctagtgctgcagaacaact
cagaattaacttaaaacattaacaataatcacccttcttacataatctct
aaaggttagaattgggaaacaacttatttctggctaagggtcttatgagg
tagcagccaagaggtttgttgatcctacagtgtgacccctcggttagtct
gaaggagtcctttctgtgtgattagaaatttagtgtaaagctactggaga
aaacggaacctcagctccttgccatgtagacctctccacaggcctgcttt
atccttatcacagcacggctgctagtgctacctcgtcctgtccccggccc
cttgctgccagagtgagtgcacagatccgtgtgaatgtctgtgtctagag
ctagctcagaatgtctcaacatcatttgcatgttcctaacaactgacaga
tattgctcagatcttgttatttaggagaaggcaagcactgg
gaattcttaatatgtagcctttaactaaatagaaaagctttgcagggaac
ctttttttttctcatattttaaagacagaaaagctaaaacttacggcccc
tcacttgggtaaaagaaggcctaagatggaatatggcatctctgtctcta
gagccatctctagagcaaggatgctgttccccgagaagcctttgccttag
ggttgagggcaacattcaaggcttgcctctccttcaaaatgtacctcctc
tggggatcctgtggggagccatctttctaacgtctaatcacctgagcagc
ctgtgccactggcactgtgggttttactgaggacatagtttagtgataaa
tgttctgcaaagattgacagagatcttgctccagctaattgctataataa
ataaccccaaagctcagtggcataagcttcacattgtggtccactgtaag
ccagtggcagccagggaagagtattgaaaattgagggatcttctctggac
gtcctctagtgggtcctctaaaactagtcaaacaataaaggaaaagtcag
tagataaggcccatccatgtttaaacatctgctagaaagttggaaatcca
tgggtctgtcagaataatgggtgccgtgtaagaacaagcatccggatttg
gatcccaagcaactacatcaaacctaaggatggcggcatgaatgtgtcac
tgcagtcctggaggggtgagagacagattctcagagatctctaaccggct
tggagagtcaactgtgagtgttaggcttagtgaaggccatgtctcaaaat
acacagagaaaaggatagagagaaatgaggagaacactctatcctcaagg
tacatgcatacaccacacacaaaaataaaataaaataaaataaaataaat
agtaaaagagtgggcgacatgtgaaccacacttcctcttacttcctatgg
gtaaaaatttggtcatgtgtcctacccaaagaaggagcactgatagcaga
atgccatatttcctaaactcacttctatctattatctattaatgggaaat
gacaggaggcaggagaatttaatggatcttacccgctgtcgcggacgggc
caggaagaacacagcaacagaatttctcgcggcaaaccttattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43637380_43638527
seq2: B6Ng01-099F05.b_47_1187

seq1  GAATTCATTCAATTTGTTAGGAAAGGCATCTTAGGCTCTGAAAAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAATTTGTTAGGAAAGGCATCTTAGGCTCTGAAAAAGAGAG  50

seq1  AGGATTGAAGTCCTGCAAGTTTTAGGGATCACCATGTTAGCCAGTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAAGTCCTGCAAGTTTTAGGGATCACCATGTTAGCCAGTTTCTG  100

seq1  TTTCTAACTGGGATAATTTATTTTTCATATGTATTATGTCAAGAAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTGGGATAATTTATTTTTCATATGTATTATGTCAAGAAAGGGA  150

seq1  AAAGAAGCTTTGGGAAAACATCTCCGCATAGTATAAAGACATAAGGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTTTGGGAAAACATCTCCGCATAGTATAAAGACATAAGGCTGC  200

seq1  CTATGCTGCCGCTGTGTAGCTATCAACACCGTTAGCTGAACGCTCCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGCCGCTGTGTAGCTATCAACACCGTTAGCTGAACGCTCCTGCT  250

seq1  TGATGTCTTCCTCCTCCGCCTGCTGGCTCATGCCACTGGTTCCTGCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTCCTCCTCCGCCTGCTGGCTCATGCCACTGGTTCCTGCTTAG  300

seq1  CATGCATTTTCTTTCTCCACACTTTGGGACCACTGCCTTTATATGGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTTTCTTTCTCCACACTTTGGGACCACTGCCTTTATATGGGGGC  350

seq1  GGCGATGCTGGACCTCTACACAGTCTGTCTAAGCAGAGCTATGGCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATGCTGGACCTCTACACAGTCTGTCTAAGCAGAGCTATGGCAAACA  400

seq1  AAGTAAGCAGCTGGGGTACCTGATGTGATTATTGTTTCCCCATCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCAGCTGGGGTACCTGATGTGATTATTGTTTCCCCATCTTTCCC  450

seq1  TCCCTCATGTTCAGGGCAGCGCCCAGTCTTCTCTTGTCTTTTTATCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATGTTCAGGGCAGCGCCCAGTCTTCTCTTGTCTTTTTATCTCGG  500

seq1  AAAATCATTTCCGCTGCTTAGGACACAGACTGCATTTGTGTTTCTCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTTCCGCTGCTTAGGACACAGACTGCATTTGTGTTTCTCATAA  550

seq1  AATGTCTCCTGAAACCAGTATTTGCTTAGTCTTCCTCAAGAGATCTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCTGAAACCAGTATTTGCTTAGTCTTCCTCAAGAGATCTACCA  600

seq1  ATAGACAGGATTCGGAGAGTGCAAATTTCAAAATGAGCTCCTTGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGATTCGGAGAGTGCAAATTTCAAAATGAGCTCCTTGTTCTCT  650

seq1  TTCTATTGTAATAAGAGATTGTATTACTTGTCTAGTGCTGCAGAACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTGTAATAAGAGATTGTATTACTTGTCTAGTGCTGCAGAACAACT  700

seq1  CAGAATTAACTTAAAACATTAACAATAATCACCCTTCTTACATAATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAACTTAAAACATTAACAATAATCACCCTTCTTACATAATCTCT  750

seq1  AAAGGTTAGAATTGGGAAACAACTTATTTCTGGCTAAGGGTCTTATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTAGAATTGGGAAACAACTTATTTCTGGCTAAGGGTCTTATGAGG  800

seq1  TAGCAGCCAAGAGGTTTGTTGATCCTACAGTGTGACCCCTCGGTTAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCAAGAGGTTTGTTGATCCTACAGTGTGACCCCTCGGTTAGTCT  850

seq1  GAAGGAGTCCTTTCTGTGTGATTAGAAATTTAGTGTAAAGCTACTGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTCCTTTCTGTGTGATTAGAAATTTAGTGTAAAGCTACTGGAGA  900

seq1  AAACGGAACCTCAGCTCCTTGCCATGTAGACCTCTCCACAGGCCTGCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGAACCTCAGCTCCTTGCCATGTAGACCTCTCCACAGGCCTGCTTT  950

seq1  ATCCTTATCACAGCACGGCTGCTAGTGCTACCTCGTCCTGTCCCCGGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATCACAGCACGGCTGCTAGTGCTACCTCGTCCTGTCCCCGGCCC  1000

seq1  CTTGCTGCCCAGAGTGAGTGCACAGATCCGTGTGAATGTCTGTGTCCTAG  1050
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTGCTG-CCAGAGTGAGTGCACAGATCCGTGTGAATGTCTGTGT-CTAG  1048

seq1  AGCCTAGCCTCAG-ATGTCTCACACCATCATTTGCATGGTATCCTAACAA  1099
      || |||| ||||| ||||||  || |||||||||||||   |||||||||
seq2  AG-CTAG-CTCAGAATGTCT--CAACATCATTTGCATG--TTCCTAACAA  1092

seq1  CTGACCAGATATGGCTCAGGATCT--GTAATTAGGAAGAGGCAAGCACTG  1147
      |||| ||||||| ||||| |||||   || ||||||  ||||||||||||
seq2  CTGA-CAGATATTGCTCA-GATCTTGTTATTTAGGAGAAGGCAAGCACTG  1140

seq1  G  1148
      |
seq2  G  1141

seq1: chr5_43767792_43768949
seq2: B6Ng01-099F05.g_67_1210 (reverse)

seq1  CAATAAAGTTTTGCCGC-AGAAGATTCTGGTTTGCTGTGTTCTTCCTGGC  49
      |||| ||| |||||||| |||| ||||||  |||||||||||||||||||
seq2  CAAT-AAGGTTTGCCGCGAGAA-ATTCTG--TTGCTGTGTTCTTCCTGGC  46

seq1  CGGT-CGCGAACGCGTGTAAGAAACTATTAAATTCTTCCTGCCT-CTGTC  97
      | || |||||  ||| ||||| | | ||||||||| |||||||| |||||
seq2  CCGTCCGCGACAGCGGGTAAG-ATCCATTAAATTC-TCCTGCCTCCTGTC  94

seq1  ATTTCCATTTAATAGATAATAGATAAGAAGTGAGTTTTAGGAAATAATGG  147
      ||||||  |||||||||||||||| ||||||||| |||||||||||   |
seq2  ATTTCCCATTAATAGATAATAGAT-AGAAGTGAG-TTTAGGAAATA--TG  140

seq1  GCATTCTGCTTATCAGTGCTCCCTTCTTTGGGGTAGGACACATGACCAAA  197
      ||||||||| |||||||||| |||||||| ||||||||||||||||||||
seq2  GCATTCTGC-TATCAGTGCT-CCTTCTTT-GGGTAGGACACATGACCAAA  187

seq1  TTTTTACCCATAGGAAGTAAGAGGAAGTGTTGGTTCACATGTCGCCCACT  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTACCCATAGGAAGTAAGAGGAAGTG-TGGTTCACATGTCGCCCACT  236

seq1  CTTTTACTATTTTATTTTATTTTATTTTATTTTATTTTTGTGTGTGGTGT  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTA-TTTATTTTATTTTATTTTATTTTATTTTTGTGTGTGGTGT  285

seq1  ATGCATGTACCTTGAGGATAGAGTGTTCTCCTTCATTTCTCTCTATCCTT  347
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCATGTACCTTGAGGATAGAGTGTTCTCC-TCATTTCTCTCTATCCTT  334

seq1  TTCTCTGTGTATTTTGAGACATGGGCCTTCACTAAGCCTAACACTCACAG  397
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTCTGTGTATTTTGAGACAT-GGCCTTCACTAAGCCTAACACTCACAG  383

seq1  TTGACTCTCCAAGCCGGTTAGAGATCTCTGAGAATCTGTCTCTCACCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCCAAGCCGGTTAGAGATCTCTGAGAATCTGTCTCTCACCCCT  433

seq1  CCAGGACTGCAGTGACACATTCATGCCGCCATCCTTAGGTTTGATGTAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTGCAGTGACACATTCATGCCGCCATCCTTAGGTTTGATGTAGT  483

seq1  TGCTTGGGATCCAAATCCGGATGCTTGTTCTTACACGGCACCCATTATTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGATCCAAATCCGGATGCTTGTTCTTACACGGCACCCATTATTC  533

seq1  TGACAGACCCATGGATTTCCAACTTTCTAGCAGATGTTTAAACATGGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACCCATGGATTTCCAACTTTCTAGCAGATGTTTAAACATGGATG  583

seq1  GGCCTTATCTACTGACTTTTCCTTTATTGTTTGACTAGTTTTAGAGGACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATCTACTGACTTTTCCTTTATTGTTTGACTAGTTTTAGAGGACC  633

seq1  CACTAGAGGACGTCCAGAGAAGATCCCTCAATTTTCAATACTCTTCCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGGACGTCCAGAGAAGATCCCTCAATTTTCAATACTCTTCCCTG  683

seq1  GCTGCCACTGGCTTACAGTGGACCACAATGTGAAGCTTATGCCACTGAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACTGGCTTACAGTGGACCACAATGTGAAGCTTATGCCACTGAGC  733

seq1  TTTGGGGTTATTTATTATAGCAATTAGCTGGAGCAAGATCTCTGTCAATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTATTTATTATAGCAATTAGCTGGAGCAAGATCTCTGTCAATC  783

seq1  TTTGCAGAACATTTATCACTAAACTATGTCCTCAGTAAAACCCACAGTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAACATTTATCACTAAACTATGTCCTCAGTAAAACCCACAGTGC  833

seq1  CAGTGGCACAGGCTGCTCAGGTGATTAGACGTTAGAAAGATGGCTCCCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCACAGGCTGCTCAGGTGATTAGACGTTAGAAAGATGGCTCCCCA  883

seq1  CAGGATCCCCAGAGGAGGTACATTTTGAAGGAGAGGCAAGCCTTGAATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCCCAGAGGAGGTACATTTTGAAGGAGAGGCAAGCCTTGAATGT  933

seq1  TGCCCTCAACCCTAAGGCAAAGGCTTCTCGGGGAACAGCATCCTTGCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAACCCTAAGGCAAAGGCTTCTCGGGGAACAGCATCCTTGCTCT  983

seq1  AGAGATGGCTCTAGAGACAGAGATGCCATATTCCATCTTAGGCCTTCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCTAGAGACAGAGATGCCATATTCCATCTTAGGCCTTCTTT  1033

seq1  TACCCAAGTGAGGGGCCGTAAGTTTTAGCTTTTCTGTCTTTAAAATATGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGTGAGGGGCCGTAAGTTTTAGCTTTTCTGTCTTTAAAATATGA  1083

seq1  GAAAAAAAAAGGTTCCCTGCAAAGCTTTTCTATTTAGTTAAAGGCTACAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAGGTTCCCTGCAAAGCTTTTCTATTTAGTTAAAGGCTACAT  1133

seq1  ATTAAGAATTC  1158
      |||||||||||
seq2  ATTAAGAATTC  1144