BAC Information

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BAC

Clone NameB6Ng01-099I08
Chromosome5 (Build37)
Map Location 56,988,748 - 57,125,735
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099I08.bB6Ng01-099I08.g
ACCDH909292DH909293
length958940
definitionDH909292|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I08, 5' end.DH909293|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,125,211 - 57,125,735)(56,988,748 - 56,989,340)
sequence
gaattccttatatccaatttttctcaaaatgcatcatatcaaagttcact
atcaacaaatgtgagtatactttatagagaaaaccccttaaaacatttaa
gaatatgggcctagagagatgctccaatggctaagatcactggctaccct
tcctgaggacgcaaattgaattcccagaccccacatgcaattcacaactg
tctgcaactccatttcctggagtcacaattatggacataaaataaattta
aatgttctttatttaagaattataaaaaatttgactggatttaatttaaa
attttaagttatactctgtttatgccacataggttattttttccaacttt
taaaacttatttattttatgcataagaatgttttgttcatatatgtgttt
gcaaaccgcacgtgtgtctagagttcagaagagggaaccaaatttctcca
aacttgagttgtagacggttgtgagccatcgtgtggatgctgggaatgga
acttgggttctctgcaagatcagcaagtactctcaaccacagatctatct
ctccaacaccaagtttttaatttttttattagatatttttatttccattt
caaatgctatcccctttcctagtttcctctttgaaagtaccctatacact
ccccctgccctgctccccaacacacccactccctcttcctggccttggaa
ttcccctgtactgggacatataatctttgcaagaccaaaggcctttcctc
caattgatggcaaacgaggccatcctctactacatatacaactagagaca
cagctctcagggtactggttagttcatattgttgatcctcctgtagggtt
gcagaccccttttgctctttgggtacttcctctagctccttcattagggg
ccctttgttccatccaatagatgactgtgagcatccacttctgtattttc
caggccct
gaattcatttgttttttgtccactcttgatgcctgagcacactgtgttga
ccattcagatttttgtagttgactgccccggggtatatacagaatgttgg
ttttagttccaactgatatcatgaaacatgtgattgtgggctagtaagat
ggacaagttggtaaggtacttgttgtgaagttctgaatagctaaatttga
tctgtttaagtgaatggaaaaggagagaattgactcccccagattctctg
attttcacatttgtgttatcctagatctgtttcctcacacacgtatgtgc
aatagtaatgttaaataaaaatacaaatacaaatacctcttgcaatttat
actcagcaatcaaaaatgaaatacgaagtctccacaataaaccaatataa
tattaaatgtaatgatgtgatttcagtttaggatcatatcaatttgtagg
caaatatccaatgtgaatatttacataatagcaaagtatagttacatttc
tgtacagataggttaaggagattactaggctggctttgtatgctgtttta
tttatcgagtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgctttgta
agtggagtaattctttttgtcttacagctctggagtctgaagtatgaaat
tgaggcattgaaagatttagctcgttgaggccacttccccttggttaaca
gatggacatgccctgtacctttagatgtcattctctttgtgtgagcatct
ctgtgtacctttgttttctcctttatagcaagacatcagttgcattagat
agaggcacataaattgtcttgcttttactgaatcacatctgacacagtcc
tgcctcaagtacacattctgtgggtactgtggcacaggactcacattccc
tactttgttacaaaatgatccatgaagctgtggtcttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57125211_57125735
seq2: B6Ng01-099I08.b_40_564 (reverse)

seq1  TGCTGATCTTGCAGAGAACCCAAGTTCCATTCCCAGCATCCACACGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCTTGCAGAGAACCCAAGTTCCATTCCCAGCATCCACACGATGG  50

seq1  CTCACAACCGTCTACAACTCAAGTTTGGAGAAATTTGGTTCCCTCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCGTCTACAACTCAAGTTTGGAGAAATTTGGTTCCCTCTTCTG  100

seq1  AACTCTAGACACACGTGCGGTTTGCAAACACATATATGAACAAAACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGACACACGTGCGGTTTGCAAACACATATATGAACAAAACATTC  150

seq1  TTATGCATAAAATAAATAAGTTTTAAAAGTTGGAAAAAATAACCTATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATAAAATAAATAAGTTTTAAAAGTTGGAAAAAATAACCTATGTG  200

seq1  GCATAAACAGAGTATAACTTAAAATTTTAAATTAAATCCAGTCAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAACAGAGTATAACTTAAAATTTTAAATTAAATCCAGTCAAATTTT  250

seq1  TTATAATTCTTAAATAAAGAACATTTAAATTTATTTTATGTCCATAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCTTAAATAAAGAACATTTAAATTTATTTTATGTCCATAATTG  300

seq1  TGACTCCAGGAAATGGAGTTGCAGACAGTTGTGAATTGCATGTGGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAGGAAATGGAGTTGCAGACAGTTGTGAATTGCATGTGGGGTCT  350

seq1  GGGAATTCAATCTGCGTCCTCAGGAAGGGTAGCCAGTGATCTTAGCCATT  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCAATTTGCGTCCTCAGGAAGGGTAGCCAGTGATCTTAGCCATT  400

seq1  GGAGCATCTCTCTAGGCCCATATTCTTAAATGTTTTAAGGGGTTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCTCTCTAGGCCCATATTCTTAAATGTTTTAAGGGGTTTTCTCT  450

seq1  ATAAAGTATACTCACATTTGTTGATAGTGAACTTTGATATGATGAATTTT  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAAAGTATACTCACATTTGTTGATAGTGAACTTTGATATGATGCATTTT  500

seq1  GAGAAAAATTGGATATAAGGAATTC  525
      |||||||||||||||||||||||||
seq2  GAGAAAAATTGGATATAAGGAATTC  525

seq1: chr5_56988748_56989340
seq2: B6Ng01-099I08.g_65_657

seq1  GAATTCATTTGTTTTTTGTCCACTCTTGATGCCTGAGCACACTGTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTTTTTTGTCCACTCTTGATGCCTGAGCACACTGTGTTGA  50

seq1  CAATTCAGATTTTTGTAGTTGACTGCCCCGGGGTATATACAGAATGTTGG  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGATTTTTGTAGTTGACTGCCCCGGGGTATATACAGAATGTTGG  100

seq1  TTTTAGTTCCAACTGATATCATGAAACATGTGATTGTGGGCTAGTAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCCAACTGATATCATGAAACATGTGATTGTGGGCTAGTAAGAT  150

seq1  GGACAAGTTGGTAAGGTACTTGTTGTGAAGTTCTGAATAGCTAAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTTGGTAAGGTACTTGTTGTGAAGTTCTGAATAGCTAAATTTGA  200

seq1  TCTGTTTAAGTGAATGGAAAAGGAGAGAATTGACTCCCCCAGATTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAAGTGAATGGAAAAGGAGAGAATTGACTCCCCCAGATTCTCTG  250

seq1  ATTTTCACATTTGTGTTATCCTAGATCTGTTTCCTCACACACGTATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACATTTGTGTTATCCTAGATCTGTTTCCTCACACACGTATGTGC  300

seq1  AATAGTAATGTTAAATAAAAATACAAATACAAATACCTCTTGCAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAATGTTAAATAAAAATACAAATACAAATACCTCTTGCAATTTAT  350

seq1  ACTCAGCAATCAAAAATGAAATAGGAAGTCTCCACAATAAACCAATATAA  400
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTCAGCAATCAAAAATGAAATACGAAGTCTCCACAATAAACCAATATAA  400

seq1  TATTAAATGTAATGATGTGATTTCAGTTTAGGTTCATATCAATTTGTAGG  450
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATTAAATGTAATGATGTGATTTCAGTTTAGGATCATATCAATTTGTAGG  450

seq1  CAAATATCCAATGTGAATATTTACATAATAGCAAAGTATAGTTTCATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAATATCCAATGTGAATATTTACATAATAGCAAAGTATAGTTACATTTC  500

seq1  TGTACAGATAGGTTAAGGAGATTACTAGGCTGGCTTTGTATGCTGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGATAGGTTAAGGAGATTACTAGGCTGGCTTTGTATGCTGTTTTA  550

seq1  TTTATCGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTG  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTG  593