BAC Information

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BAC

Clone NameB6Ng01-099J09
Chromosome5 (Build37)
Map Location 15,155,929 - 15,185,649
singlet/doubletdoublet
Overlap gene4930572O03Rik
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J09.bB6Ng01-099J09.g
ACCDH909340DH909341
length6531,126
definitionDH909340|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J09, 5' end.DH909341|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,155,929 - 15,156,547)(15,184,482 - 15,185,649)
sequence
gaattcagcatttattccctgaaagcaaatcctacctatctctccatgag
atgaggctttgtctcacattaagaactgcagaatgcaatacatcaaaacc
ttgctgatctccatggtggtgatgcacaccacagcctcacggtgaacatc
tacactggcaggtttcagggtatgttgaagtagtccaccatgtcagtgta
acctgcaaagtgccatgagacaatactaatagaaatctgcaggattcctc
cacattagatttcactatggtcttcaatgtcattttgtaaagaaatacta
tgggttcacagttacacacacacacacacacacacacacacaaacatgaa
gaccagaggactttatgggaggattgttctctctactatgtgcattccaa
ggaaaaatttctggtttctaggcttgacagcaatgatgaatacctgctca
accatgtcattaactcatcagctgatcatctaaaccaaggaatttcatat
gctctatatttgtatttatgttccctttctcactctctctctgtctctct
gtttctctgtctgtctctctctttctgtctctctgtctctgtctgtctgt
ttgtctgtttgtctgtctgtctgtctctctctctctctctctctctctct
ctc
gaattcaccaggaaagaacaaaagcccaaaagacagaggagaagtgttca
tggatgcactagccagttacctctggaagagcagctgcatggattcagga
tgcgcttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagttctaatcaaaatgcttctagagaactccacactgagtca
gggctttctgttcccaagcaccacagcactgatctccatctgtttttctc
tgactcttaaaacatccttcccaattgaaaaacaaagcacaaaatcatct
taattgccttgccaaaggattggaaaggagcaccactttttgttcagaag
acaacttcagaaaacaaatgagaagcctcaaatgggccaaaagccacaaa
ttgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggagtt
caccagggagaggagctctgactccaaaatagtcacttttccattttgtc
aatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgttc
caggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtat
ccaatgctgataactggcagcagaaactctgggagggtcacatctatgtg
gtgacacaagaagctttctccagggtctagcacactcttaccaaagcctc
ttgcccaggttcgctatctcatctaaatgctcactcgcattaagggacaa
catggtgtaattggaaatggacagacacatttacttatcgttttggccat
aactggacaaggagaaagtctcagctacattccaccaggcccatagcact
ctcagacaaatagaaggatgaaagataggaaaatacacacttcagtgtca
gctgtgggcccagtttccaggagatgggagatggtggttttcctccagtg
ccgagatgatgccctttgggtgggccatttcactcacagattgtagtcct
gcaggagtcttgctcttatgccctttacagttaagcgtgacaccatttag
gaaaacattcaacaagcagattgatccccttgttaattacaagattaaac
gataattagctagttcagctagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15155929_15156547
seq2: B6Ng01-099J09.b_46_698

seq1  GAATTCAGCATTTATTCCCTGACGGCAAATCCTACCTATCTCTCCATGAG  50
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GAATTCAGCATTTATTCCCTGAAAGCAAATCCTACCTATCTCTCCATGAG  50

seq1  ATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACC  100

seq1  TTGTTGATCTCCATGGTGGTGATGCACACCACAGCCTCACGGTGAACATC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATCTCCATGGTGGTGATGCACACCACAGCCTCACGGTGAACATC  150

seq1  TACACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTA  200

seq1  ACCTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTC  250

seq1  CACATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTA  300

seq1  TGGGTTCACAG--------------ATACACACACACACACAAACATGAA  336
      |||||||||||              | |||||||||||||||||||||||
seq2  TGGGTTCACAGTTACACACACACACACACACACACACACACAAACATGAA  350

seq1  GACCAGAGGACTTTAAGGGAGGATTGTTCTCTCTACTATGTGCATTCCAA  386
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACCAGAGGACTTTATGGGAGGATTGTTCTCTCTACTATGTGCATTCCAA  400

seq1  GGAAAAAATTCTGGTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCA  436
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTTCTGGTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCA  450

seq1  ACCATGTCATTAACTCATCAACTAATCATCTAAACCAAGCCATTTCATAA  486
      |||||||||||||||||||| || |||||||||||||||  |||||||| 
seq2  ACCATGTCATTAACTCATCAGCTGATCATCTAAACCAAGGAATTTCATAT  500

seq1  GCTCTATATTTGTATTTATGTTTCCTT------ACTCTCTCTGTCTCTCT  530
      |||||||||||||||||||||| ||||       ||||||||||||||||
seq2  GCTCTATATTTGTATTTATGTTCCCTTTCTCACTCTCTCTCTGTCTCTCT  550

seq1  GTTTCTCTGTCTGTCTCTCTCTTTCTGTCTCTCTGTCTCTGTC-------  573
      |||||||||||||||||||||||||||||||||||||||||||       
seq2  GTTTCTCTGTCTGTCTCTCTCTTTCTGTCTCTCTGTCTCTGTCTGTCTGT  600

seq1  ---TCTG--TCTCTGTC--TCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT  616
         ||||  | ||||||  |||||||||||||||||||||||||||||||
seq2  TTGTCTGTTTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT  650

seq1  CTC  619
      |||
seq2  CTC  653

seq1: chr5_15184482_15185649
seq2: B6Ng01-099J09.g_69_1194 (reverse)

seq1  AGATCTTTAAACTGAACTAGCTATAATTATCTGTTTTTATCCTTGGTAAA  50
      ||||||   | ||||||||||  ||||||||   ||| |||  | |||| 
seq2  AGATCT---AGCTGAACTAGC--TAATTATC--GTTTAATC--TTGTAAT  41

seq1  TAAACAAAGGGGATCACTCTGCTTTGTTTGAATGGTTTTTTCTTAAATGT  100
      |||   |||||||||| |||||||   |||||||   ||||| |||||| 
seq2  TAA--CAAGGGGATCAATCTGCTT--GTTGAATG---TTTTCCTAAATGG  84

seq1  TGTCACGCTTAACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGAAGGA  150
      ||||||||||||||||||||||  |||||| ||||||||| |||| ||| 
seq2  TGTCACGCTTAACTGTAAAGGG--CATAAG-AGCAAGACT-CCTGCAGG-  129

seq1  ACTACCAAACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGG  200
      |||| ||| ||||||||| |||||||||||||||||||||||||||| ||
seq2  ACTA-CAATCTGTGAGTG-AAATGGCCCACCCAAAGGGCATCATCTC-GG  176

seq1  CACTGGAGGAAAACGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGC  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTGGAGGAAAACCACCATCTCCCATCTCCTGGAAACTGGGCCCACAGC  226

seq1  TGACACTGAAGTGTGTATTTTCCATCCTTCTATTTGTGTATCTTTCATCC  300
      |||||||||||||||||||||||               ||||||||||||
seq2  TGACACTGAAGTGTGTATTTTCC---------------TATCTTTCATCC  261

seq1  TTCTATTTGGTCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGACT  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTT-GTCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGACT  310

seq1  TTCTCCTTTTCCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCCAT  400
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTCCTTGTCCAGTTATGGCCAAAACGATAAGTAAATGTGTCTGTCCAT  360

seq1  TTCCAATTACACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTACACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAGA  410

seq1  TAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAACCTGGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAGA  460

seq1  AAGCTTCTTGTGTCACCACATATATGTGACCCTCCCAGAGTTTCTGCTGC  550
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGCTTCTTGTGTCACCACATAGATGTGACCCTCCCAGAGTTTCTGCTGC  510

seq1  CAGTTATCAGCATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCAGCATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGAG  560

seq1  ACCTGTTTTCTTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTCTTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCATG  610

seq1  GCCTTTTGCCATCATTGACAAAATGTTAAAGTGACTATTTTGGAGTCAGA  700
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GCCTTTTGCCATCATTGACAAAATGGAAAAGTGACTATTTTGGAGTCAGA  660

seq1  GCTCCTCTCCCTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGTTT  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTCCTCTCCCTGGTGAACTCCTGCTGGCAGTAGACAGCCAGCCTTGTTT  710

seq1  TTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCCGTTTGAGGCTTCTCTTT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TTCTTTTGTTTTTCAATTTGTGGCTTTTGGCCCATTTGAGGCTTCTCATT  760

seq1  TGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGAAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCC  810

seq1  TTTGGCAAGGCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGAAG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGGCAAGGCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTGGGAAG  860

seq1  GATGTCTTAAGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTTG  950
      ||||| ||||||||||||||||||||||||||||||||||||||||  ||
seq2  GATGTTTTAAGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGG--TG  908

seq1  CTTGGGAACAGAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAACAGAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTT  958

seq1  GATTAGGACTTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCACC  1050
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAACTTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCACC  1008

seq1  CAGTGTGCATGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGGT  1100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCATGAAGCGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGGT  1058

seq1  AACTGGCTAGTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCTTG  1150
      |||||||||||||| |||||||||||||||||||| |||||||||| |||
seq2  AACTGGCTAGTGCATCCATGAACACTTCTCCTCTGTCTTTTGGGCTTTTG  1108

seq1  TTCTTTCCTGGTGAATTC  1168
      ||||||||||||||||||
seq2  TTCTTTCCTGGTGAATTC  1126