MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-099K06
Chromosome	5 (Build37)
Map Location	3,230,345 - 3,348,178
singlet/doublet	doublet
Overlap gene	LOC100034726, Cdk6
Upstream gene	LOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585
Downstream gene	5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC171266 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:171266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040892 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040892
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC667565 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC624254 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624254
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100040940 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040940
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC667585 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	LOC100034726 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100034726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Cdk6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12571 MGI:1277162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5830415L20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68152 MGI:1915402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700109H08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77036 MGI:1924286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030048B08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269623 MGI:2442653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pex1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71382 MGI:1918632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gatad1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67210 MGI:1914460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930511M11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75010 MGI:1922305
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankib1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70797 MGI:1918047
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Krit1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:79264 MGI:1930618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932412H11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242838 MGI:3045299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041009 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 35 Proteins pseudo : _no_value

name	LOC667617 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667617
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 552 ESTs, 9 Proteins pseudo : _no_value

name	Mterf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545725 MGI:1918240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Akap9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100986 MGI:2178217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyp51 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13121 MGI:106040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000053178 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208595 MGI:3704243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041073 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	LOC171266 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:21717772 GeneID:171266
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vomeronasal 1 receptor, G10-like transcript_id : NM_134232.1

name	Cdk6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892426 GeneID:12571 MGI:1277162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase 6 transcript_id : NM_009873.2

name	5830415L20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109948294 GeneID:68152 MGI:1915402
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5830415L20 gene transcript_id : NM_001042501.1

name	1700109H08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803495 GeneID:77036 MGI:1924286
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700109H08 gene transcript_id : NM_029843.2

name	C030048B08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348977 GeneID:269623 MGI:2442653
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030048B08 gene transcript_id : NM_172991.3

name	Pex1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61657894 GeneID:71382 MGI:1918632
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisome biogenesis factor 1 transcript_id : NM_027777.1

name	Gatad1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956153 GeneID:67210 MGI:1914460
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GATA zinc finger domain containing 1 transcript_id : NM_026033.1

name	4930511M11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803362 GeneID:75010 MGI:1922305
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930511M11 gene transcript_id : NM_029141.2

name	Ankib1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61656164 GeneID:70797 MGI:1918047
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and IBR domain containing 1 transcript_id : NM_001003909.2

name	Krit1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475699 GeneID:79264 MGI:1930618
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KRIT1, ankyrin repeat containing transcript_id : NM_030675.2

name	4932412H11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377246 GeneID:242838 MGI:3045299
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932412H11 gene transcript_id : NM_172879.2

name	Mterf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111161294 GeneID:545725 MGI:1918240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial transcription termination factor transcript_id : NM_172135.2

name	Mterf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111161446 GeneID:545725 MGI:1918240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial transcription termination factor transcript_id : NM_001013023.2

name	Akap9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661047 GeneID:100986 MGI:2178217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein (yotiao) 9 transcript_id : NM_194462.2

name	Cyp51 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061450 GeneID:13121 MGI:106040
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome P450, family 51 transcript_id : NM_020010.2

name	ENSMUSG00000053178 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111161291 GeneID:208595 MGI:3704243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, ENSMUSG00000053178 transcript_id : NM_001042670.1

name	LOC100041073 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253509 GeneID:100041073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : hypothetical protein LOC100041073 transcript_id : XM_001475743.1

name	LOC171266 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:21717773 GeneID:171266
definition	codon_start : 1 exception : unclassified translation discrepancy product : vomeronasal 1 receptor, G10-like protein_id : NP_598993.1

name	Cdk6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14149637 CCDS:CCDS19062.1 GeneID:12571 MGI:1277162
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004693 - cyclin-dependent protein kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : cyclin-dependent kinase 6 protein_id : NP_034003.1

name	5830415L20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109948295 GeneID:68152 MGI:1915402
definition	codon_start : 1 product : hypothetical protein LOC68152 protein_id : NP_001035966.1

name	1700109H08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249218 GeneID:77036 MGI:1924286
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC77036 protein_id : NP_084119.1

name	C030048B08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559873 CCDS:CCDS19064.1 GeneID:269623 MGI:2442653
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC269623 protein_id : NP_766579.2

name	Pex1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61657895 CCDS:CCDS19065.1 GeneID:71382 MGI:1918632
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : peroxin1 protein_id : NP_082053.1

name	Gatad1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956154 CCDS:CCDS19066.1 GeneID:67210 MGI:1914460
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ocular development associated product : GATA zinc finger domain containing 1 protein_id : NP_080309.1

name	4930511M11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312892 CCDS:CCDS19067.1 GeneID:75010 MGI:1922305
definition	codon_start : 1 product : hypothetical protein LOC75010 protein_id : NP_083417.1

name	Ankib1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61656165 GeneID:70797 MGI:1918047
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ankyrin repeat and IBR domain containing 1 protein_id : NP_001003909.2

name	Krit1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13994219 GeneID:79264 MGI:1930618
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence TAS]; GO:0005083 - small GTPase regulator activity [Evidence TAS] codon_start : 1 exception : mismatches in translation note : cerebral cavernous malformations 1 product : KRIT1, ankyrin repeat containing protein_id : NP_109600.1

name	4932412H11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370338 CCDS:CCDS19068.1 GeneID:242838 MGI:3045299
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC242838 protein_id : NP_766467.1

name	Mterf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111161447 GeneID:545725 MGI:1918240
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006353 - transcription termination [Evidence IEA] codon_start : 1 note : mitochondrial transcription termination factor 1 product : mitochondrial transcription termination factor precursor protein_id : NP_001013041.2

name	Mterf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26006865 GeneID:545725 MGI:1918240
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006353 - transcription termination [Evidence IEA] codon_start : 1 note : mitochondrial transcription termination factor 1 product : mitochondrial transcription termination factor precursor protein_id : NP_742147.1

name	Akap9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661048 CCDS:CCDS19070.1 GeneID:100986 MGI:2178217
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0000242 - pericentriolar material [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : A kinase (PRKA) anchor protein (yotiao) 9 protein_id : NP_919444.2

name	Cyp51 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061451 CCDS:CCDS19071.1 GeneID:13121 MGI:106040
definition	GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0008398 - sterol 14-demethylase activity [Evidence TAS] GO_process : GO:0006695 - cholesterol biosynthesis [Evidence TAS] codon_start : 1 note : cytochrome P450, 51 product : cytochrome P450, family 51 protein_id : NP_064394.2

name	LOC100041073 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253510 GeneID:100041073
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475793.1

name	ENSMUSG00000053178 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111161292 GeneID:208595 MGI:3704243
definition	codon_start : 1 note : mitochondrial transcription termination factor-like product : mitochondrial transcription termination factor-like precursor protein_id : NP_001036135.1

name	LOC100040892 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040892
definition	number : 1 pseudo : _no_value

name	LOC100040892 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040892
definition	number : 2 pseudo : _no_value

name	LOC100040892 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040892
definition	number : 3 pseudo : _no_value

name	LOC667565 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667565
definition	number : 1 pseudo : _no_value

name	LOC624254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624254
definition	number : 1 pseudo : _no_value

name	LOC624254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624254
definition	number : 2 pseudo : _no_value

name	LOC624254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624254
definition	number : 3 pseudo : _no_value

name	LOC624254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624254
definition	number : 4 pseudo : _no_value

name	LOC624254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624254
definition	number : 5 pseudo : _no_value

name	LOC100040940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040940
definition	number : 1 pseudo : _no_value

name	LOC100040940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040940
definition	number : 2 pseudo : _no_value

name	LOC100040940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040940
definition	number : 3 pseudo : _no_value

name	LOC100040940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040940
definition	number : 4 pseudo : _no_value

name	LOC100040940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040940
definition	number : 5 pseudo : _no_value

name	LOC100040940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040940
definition	number : 6 pseudo : _no_value

name	LOC100041009 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041009
definition	number : 1 pseudo : _no_value

name	LOC667585 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253507 GeneID:667585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to Speer4e protein pseudo : _no_value transcript_id : XR_032296.1

name	LOC100034726 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:130501680 GeneID:100034726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L26 pseudogene pseudo : _no_value transcript_id : NR_003373.1

name	LOC667617 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253508 GeneID:667617
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 552 ESTs, 9 Proteins product : similar to ribosomal protein S4, X-linked X pseudo : _no_value transcript_id : XR_032360.1

clone name	MSMg01-414J18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-418L07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-114O07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-437A15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-539H15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-372I16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-300I14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-346H16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-335H03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-423H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236O09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-177H07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-477M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-332P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045L05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-132J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529H05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-393P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112K19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-476P19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-172F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512N13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-140D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-430N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169M19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-179M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545N21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-386K06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-213L10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-456M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435F17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-186D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-429B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315J21
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-099K06.b	B6Ng01-099K06.g
ACC	DH909378	DH909379
length	956	755
definition	DH909378\|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K06, 5' end.	DH909379\|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K06, 3' end.
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(3,230,345 - 3,231,301)	(3,347,425 - 3,348,178)
sequence	gaattcttttacagtaactcaaagagaccgaggggctttgttccactcta ttcagtcactgacatgaggcactcagctctgatcacatgaacagattcag agatgagggagaactcaattgagatgctgttaagaacattgggaacagac gatctgagtttaggaaaatccgactacttaaggaagaagccaatgtagag aaagaataaattaagaaagaaacagagaaagggaaacaatccagatgacc acaatttcaattctaagttttctgtgtttgtgtttccaggaaaagcacaa tttcaaaatgaaagtagacagtggaaacatgactgaatgttcaaatgttc atgtggaaatagagatttaacaaaatataatccattagtattgtttgttt ggttggttggttttggttttgtttactaagtaaggcataagaaactacgg tgctcatgcatgcaataagactgaagcctattatgatttttactaagttg atcgaacaaaataatatcatttaaaataaaatgactaacttggttctata ataccatgcttcaggtacaactggtataactatttgagagaagagtacaa gttttaagccatctcaatctttaaattgagggaatcatcactctgacttc tctctgtaagaaatcaactttttctatagcctgcacagttttccatgcat gggcattacaattcaatcaataaattactagctagggcacaaatagactc acctattagagagcatagaatagaattctaaagtcacgttagtatatata tgtgttgagaaaaattagataaagaatttcgctggactgaagatagcaaa attagtatacgaaattatagaattgaaaaatgtaaaattttgcataaaga atacagcaatgctttatatgccccattacaggggaatgccaggccaagaa gctgga	gaattccctctgactcattcacttccctaccctgtgtcttttttctagaa gctgtccagcacatggtaacccctcaatatatacttggtgcacaaacaaa ctgctgataaaacaagttttactccatctctgtgtcttggttcaggatgg caaacaaaatctgtggaatggaaacactccgtctgtatacacttattctg acaaaggctccagaactcaagattacgaaccgtaaaactagagcgaatct gtgtgcaggacactattggctcatcaagcctgggacacaccaggtaagaa agaatgtgaagtcagtggtgctttgcaagcttggggggggggggcttcac acccacaaaaacaagtctgtctttctggtaaatccataaaaattaagtct taaacctttgaaaaaactaatatgtttattgtgctccttcaagcttagag gcttaactacacgtgggtagggactgtaattatgatcaattacttatggc tggaaggcacttaaaaaagcatctgcccttttaagcaatctttaaaaacc cgggcttatgaatataaaacttaccccaggaaagacaacaaattacaggt tcaggggctcagttttgacattctcccttggaaggaaaagaactgtcgct tatcttttgacttcctaagactgtccctaaaaacacaaacctctacagta agaatttctagtttagccacatatgtcgttgggggcaggagtggtggatg ggtag
quality values	Open. Hide. 61 20 19 24 61 52 47 45 50 36 35 38 20 35 43 49 50 49 49 38 32 32 41 52 52 52 16 26 28 10 13 10 20 26 25 22 22 23 27 41 36 29 35 32 24 49 52 52 41 43 59 59 59 59 37 36 45 34 49 45 59 59 52 45 59 59 52 49 52 27 27 36 37 37 23 23 30 32 31 29 39 43 43 59 45 43 38 41 45 43 39 49 38 41 52 49 49 49 32 31 49 34 38 32 37 45 39 59 52 59 45 59 52 52 52 39 26 27 38 36 44 52 39 59 52 59 49 59 59 49 43 43 39 36 52 41 45 28 43 43 45 36 52 59 59 59 49 45 61 44 35 59 49 44 49 59 45 36 49 39 39 39 33 52 59 52 52 52 52 59 52 39 59 52 49 49 59 49 45 41 43 39 59 52 49 36 59 45 41 52 59 52 59 52 59 43 43 28 52 39 49 49 36 37 52 39 39 43 45 49 52 52 52 52 39 59 49 52 43 59 59 59 59 45 36 59 31 59 52 52 52 59 52 52 52 52 52 39 52 59 43 44 35 28 59 52 52 59 52 52 43 52 31 41 52 59 52 45 36 52 52 59 49 39 39 45 36 49 52 52 52 52 52 59 52 59 52 49 45 52 45 59 59 49 49 45 49 38 43 43 59 44 50 50 39 52 43 52 43 41 52 49 45 43 31 38 43 45 52 59 52 36 36 39 30 32 23 59 49 43 45 43 59 44 59 52 52 52 39 52 52 52 49 52 59 59 41 49 59 45 43 49 38 44 49 43 52 39 36 49 39 39 49 31 37 39 59 52 49 49 39 27 49 44 59 49 52 45 43 52 52 49 43 52 45 52 49 52 49 52 52 59 52 49 49 45 52 27 39 52 52 52 59 39 45 52 59 45 49 52 59 59 49 52 52 49 43 41 52 52 49 52 52 49 43 43 31 39 39 43 49 43 43 28 27 27 32 21 36 27 31 43 45 33 59 30 36 43 24 23 23 52 33 28 28 24 19 31 18 36 29 49 29 27 33 19 13 43 28 27 43 38 24 28 24 20 24 28 17 38 24 23 34 24 29 12 27 31 23 23 30 33 33 36 31 36 28 43 28 43 21 36 31 13 23 36 27 28 34 33 30 27 18 26 20 17 16 12 13 12 17 22 13 24 25 19 21 15 12 17 17 26 24 28 37 39 25 16 36 25 28 24 34 32 26 34 35 32 27 34 34 34 19 17 34 26 34 37 12 23 22 25 26 23 19 14 26 32 22 24 34 23 14 31 49 14 19 29 18 24 37 31 37 31 31 24 31 19 14 21 12 12 14 25 18 22 23 11 26 14 31 39 13 35 15 18 23 27 15 35 21 29 18 35 19 24 27 24 33 28 10 31 18 15 17 14 21 25 45 19 23 35 24 31 28 32 42 28 23 14 33 20 28 10 10 10 12 23 24 10 17 27 24 15 29 27 21 24 24 17 24 21 27 28 11 13 12 9 10 8 22 31 24 19 31 9 11 10 9 22 12 22 27 21 14 17 8 24 12 27 27 18 27 9 28 25 31 22 10 16 23 18 21 21 11 30 36 30 11 22 21 22 23 22 12 23 22 31 28 21 17 21 23 23 12 14 14 29 18 13 14 14 23 29 25 33 14 37 14 9 10 14 21 17 8 13 29 10 12 14 19 15 10 14 8 8 12 13 19 21 24 16 12 14 14 14 20 31 8 30 17 38 19 38 9 7 30 12 30 13 19 12 17 30 24 14 16 12 13 13 18 6 8 8 6 10 17 9 11 17 14 12 21 14 17 32 10 9 22 14 28 19 21 19 14 14 10 42 24 39 24 36 36 23 23 6 17 6 16 10 13 10 20 14 23 14 14 21 12 14 9 12 12 17 6 33 22 22 9 10 17 6 10 12 8 11 19 16 14 17 8 16 15 16 8 16 13 14 16 16 17 13 26 13 33 33 18 33 22 16 18 27 27 23 25 20 34 22 26 25 33 32 28 18 37 24 20 12 18 21 24 15 8 16 24 17 24 20 24 22 33 14 19 16 24 14 13 28 29 30 28 15 33 32 25 7 17 11 9 10 10 36 30 26 15 5 13 26 25 11 7 19 15 10 22 25 25 28 25 13 7 25 11 8 15 10 10 5 18 22 12 21 25 28 16 26	Open. Hide. 61 47 55 47 61 13 16 19 12 15 20 13 12 10 13 37 30 41 59 49 59 59 59 59 49 52 52 59 52 59 52 52 52 59 43 59 43 39 45 39 49 44 43 45 45 43 38 27 59 39 23 44 32 41 39 35 36 30 22 31 36 49 45 52 59 49 43 52 52 59 52 52 52 45 52 49 45 49 52 52 45 52 49 59 52 52 59 59 39 52 49 36 49 39 36 41 49 39 44 37 49 44 59 36 45 49 59 45 41 49 52 52 52 52 52 44 49 49 45 44 59 43 44 45 39 38 43 43 43 43 41 52 49 52 44 49 49 59 59 52 45 52 52 43 30 59 59 59 59 52 36 44 59 59 52 59 52 52 59 59 59 52 59 43 52 52 59 59 52 59 52 59 59 59 59 52 59 59 59 59 45 59 59 59 59 52 52 59 59 59 52 59 59 59 52 59 59 59 52 59 59 59 45 59 59 49 61 59 59 59 59 52 43 61 59 59 59 50 49 52 36 61 59 59 59 59 27 59 59 52 59 49 39 52 52 59 59 52 59 52 43 59 45 52 52 59 59 59 52 52 50 52 59 49 59 52 59 36 59 59 52 52 59 59 59 59 59 59 52 45 52 52 49 52 49 59 59 52 59 59 59 59 59 59 59 59 59 59 59 59 59 59 39 52 44 43 59 41 59 59 59 43 59 59 59 61 59 59 61 59 45 45 52 45 52 59 61 61 59 61 59 59 59 59 55 59 49 52 59 59 59 59 61 61 61 61 61 61 61 61 61 61 59 59 31 35 23 35 23 52 43 52 52 52 41 52 45 52 59 59 59 52 45 52 36 36 37 43 41 43 43 49 52 43 49 43 59 59 52 59 59 59 52 52 52 49 41 52 52 52 43 41 52 41 59 52 36 43 49 49 49 52 52 52 49 43 43 43 39 43 52 52 52 52 52 52 52 52 52 49 43 52 43 52 41 52 52 52 52 52 52 41 49 49 43 52 52 52 52 52 52 50 43 50 50 49 47 27 55 49 55 47 55 50 50 49 50 50 50 50 37 47 34 50 50 50 50 38 50 37 49 49 39 38 43 50 31 37 35 43 37 37 34 34 24 37 40 35 35 43 36 35 43 50 47 43 45 50 19 32 53 50 47 52 52 31 47 36 43 43 50 47 50 61 53 53 32 39 21 29 31 39 50 35 39 38 38 35 32 52 53 39 47 47 35 47 43 39 33 47 45 45 24 50 53 53 47 43 52 45 47 45 52 38 47 53 45 45 41 40 52 47 42 43 50 43 38 38 38 24 38 36 45 52 47 47 43 42 28 32 47 42 45 34 43 26 28 32 38 34 37 37 52 47 42 52 38 30 37 47 45 38 36 47 47 47 28 37 47 50 45 20 50 45 53 53 37 53 30 27 53 52 42 50 45 45 45 43 38 37 17 46 43 31 46 47 46 52 52 17 43 32 50 53 53 43 43 24 28 50 42 42 45 31 17 53 53 30 35 35 30 43 38 41 41 42 50 50 17 38 35 44 53 36 28 52 52 29 23 57 57 57 32 39 30 37 27 37 47 53 47 50 53 42 27 28 25 18 16 30 29 21 57 11 16 36 35 30 31 30 31 37 52 31 52 14 38 39 18 40 36 43 40 43 33 30 30 30 38 41 30 40 39 39 37 36 38 33 37 44 19 35 40 35 40 53 28 35 29 16 36 23 10 12 8

Alignment Information

BAC End 1

BAC End 2

seq1: chr5_3230345_3231301
seq2: B6Ng01-099K06.b_46_1001

seq1  GAATTCTTTTACAGTAACTCAAAGAGACCGAGGGGCTTTGTTCCACTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACAGTAACTCAAAGAGACCGAGGGGCTTTGTTCCACTCTA  50

seq1  TTCAGTCACTGACATGAGGCACTCAGCTCTGATCACATGAACAGATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCACTGACATGAGGCACTCAGCTCTGATCACATGAACAGATTCAG  100

seq1  AGATGAGGGAGAACTCAATTGAGATGCTGTTAAGAACATTGGGAACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGGAGAACTCAATTGAGATGCTGTTAAGAACATTGGGAACAGAC  150

seq1  GATCTGAGTTTAGGAAAATCCGACTACTTAAGGAAGAAGCCAATGTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGTTTAGGAAAATCCGACTACTTAAGGAAGAAGCCAATGTAGAG  200

seq1  AAAGAATAAATTAAGAAAGAAACAGAGAAAGGGAAACAATCCAGATGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAATTAAGAAAGAAACAGAGAAAGGGAAACAATCCAGATGACC  250

seq1  ACAATTTCAATTCTAAGTTTTCTGTGTTTGTGTTTCCAGGAAAAGCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCAATTCTAAGTTTTCTGTGTTTGTGTTTCCAGGAAAAGCACAA  300

seq1  TTTCAAAATGAAAGTAGACAGTGGAAACATGACTGAATGTTCAAATGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGAAAGTAGACAGTGGAAACATGACTGAATGTTCAAATGTTC  350

seq1  ATGTGGAAATAGAGATTTAACAAAATATAATCCATTAGTATTGTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAATAGAGATTTAACAAAATATAATCCATTAGTATTGTTTGTTT  400

seq1  GGTTGGTTGGTTTTGGTTTTGTTTACTAAGTAAGGCATAAGAAACTACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTGGTTTTGGTTTTGTTTACTAAGTAAGGCATAAGAAACTACGG  450

seq1  TGCTCAGGCATGCAATAAGACTGAAGCCTATTATGATTTTTACAAAGTTG  500
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTCATGCATGCAATAAGACTGAAGCCTATTATGATTTTTACTAAGTTG  500

seq1  ATCAAACAAAATAATATCATTTAAAATAAAATGACTAACTTGGTTCTAAA  550
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCGAACAAAATAATATCATTTAAAATAAAATGACTAACTTGGTTCTATA  550

seq1  ATACCATGCTTCAGGTACAACTGGTATAACTATTTGAGAGAAGAGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGCTTCAGGTACAACTGGTATAACTATTTGAGAGAAGAGTACAA  600

seq1  GTTTTAAGCCATCTCAATCTTTAAATTGAGGGAATAATCACTCTGACTTC  650
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTTAAGCCATCTCAATCTTTAAATTGAGGGAATCATCACTCTGACTTC  650

seq1  TCTCTGTAAGAAATCAACATTTTCTAGAGCCTGGACAGTTTTCCATGCAT  700
      |||||||||||||||||| ||||||| |||||| ||||||||||||||||
seq2  TCTCTGTAAGAAATCAACTTTTTCTATAGCCTGCACAGTTTTCCATGCAT  700

seq1  -GGCATTACAATTCAATCAATAAA-TACTAACTA-GGCACAAATAGACTC  747
       ||||||||||||||||||||||| ||||| ||| |||||||||||||||
seq2  GGGCATTACAATTCAATCAATAAATTACTAGCTAGGGCACAAATAGACTC  750

seq1  ACCTATTAGAGAGCAGAGAATAGAATTCTAAAATTACTTTAGTATATATA  797
      ||||||||||||||| |||||||||||||||| | || ||||||||||||
seq2  ACCTATTAGAGAGCATAGAATAGAATTCTAAAGTCACGTTAGTATATATA  800

seq1  TATGTTGAGAAAAATAAGATAAAGAATTTCACTGAACTAAAAATAGCAAA  847
      | ||||||||||||| |||||||||||||| ||| ||| || ||||| ||
seq2  TGTGTTGAGAAAAATTAGATAAAGAATTTCGCTGGACTGAAGATAGC-AA  849

seq1  AATAAGTATACAGAAATTATAGAATTGAAAAATGTAAAAATTTTGGATAA  897
      ||| ||||||| ||||||||||||||||||||||| ||||||||| ||||
seq2  AATTAGTATAC-GAAATTATAGAATTGAAAAATGT-AAAATTTTGCATAA  897

seq1  AGAATACAGCAATGCTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA  947
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  AGAATACAGCAATGCTTTATATGCCCCATTACAGGGGAATGCCA-GGCCA  946

seq1  AGAAGCTGGA  957
      ||||||||||
seq2  AGAAGCTGGA  956

seq1: chr5_3347425_3348178
seq2: B6Ng01-099K06.g_66_820 (reverse)

seq1  CTACCCATCCACCACTCCTGCCCCCAACGACATATGTGGCTAAACTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCCACCACTCCTGCCCCCAACGACATATGTGGCTAAACTAGAA  50

seq1  ATTCTTACTGTAGAGGTTTGTGTTTTTAGGGACAGTCTTAGGAAGTC-AA  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTCTTACTGTAGAGGTTTGTGTTTTTAGGGACAGTCTTAGGAAGTCAAA  100

seq1  AGATAAGCGACAGTTCTTTTCCTTCCAAGGGAGAATGTCAAAACTGAGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCGACAGTTCTTTTCCTTCCAAGGGAGAATGTCAAAACTGAGCC  150

seq1  CCTGAACCTGTAATTTGTTGTCTTTCCTGGGGTAAGTTTTATATTCATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCTGTAATTTGTTGTCTTTCCTGGGGTAAGTTTTATATTCATAA  200

seq1  GCCCGGGTTTTTAAAGATTGCTTAAAAGGGCAGATGCTTTTTTAAGTGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGTTTTTAAAGATTGCTTAAAAGGGCAGATGCTTTTTTAAGTGCC  250

seq1  TTCCAGCCATAAGTAATTGATCATAATTACAGTCCCTACCCACGTGTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCATAAGTAATTGATCATAATTACAGTCCCTACCCACGTGTAGT  300

seq1  TAAGCCTCTAAGCTTGAAGGAGCACAATAAACATATTAGTTTTTTCAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTCTAAGCTTGAAGGAGCACAATAAACATATTAGTTTTTTCAAAG  350

seq1  GTTTAAGACTTAATTTTTATGGATTTACCAGAAAGACAGACTTGTTTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGACTTAATTTTTATGGATTTACCAGAAAGACAGACTTGTTTTTG  400

seq1  TGGGTGTGAAGCCCCCCCCCCCCAAGCTTGCAAAGCACCACTGACTTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGAAGCCCCCCCCCCCCAAGCTTGCAAAGCACCACTGACTTCAC  450

seq1  ATTCTTTCTTACCTGGTGTGTCCCAGGCTTGATGAGCCAATAGTGTCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTTACCTGGTGTGTCCCAGGCTTGATGAGCCAATAGTGTCCTG  500

seq1  CACACAGATTCGCTCTAGTTTTACGGTTCGTAATCTTGAGTTCTGGAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATTCGCTCTAGTTTTACGGTTCGTAATCTTGAGTTCTGGAGCC  550

seq1  TTTGTCAGAATAAGTGTATACAGACGGAGTGTTTCCATTCCACAGATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGAATAAGTGTATACAGACGGAGTGTTTCCATTCCACAGATTTT  600

seq1  GTTTGCCATCCTGAACCAAGACACAGAGATGGAGTAAAACTTGTTTTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCATCCTGAACCAAGACACAGAGATGGAGTAAAACTTGTTTTATC  650

seq1  AGCAGTTTGTTTGTGCACCAAGTATATATTGAGGGGTTACCATGTGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTGTTTGTGCACCAAGTATATATTGAGGGGTTACCATGTGCTGG  700

seq1  ACAGCTTCTAGAAAAAAGACACAGGGTAGGGAAGTGAATGAGTCAGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCTAGAAAAAAGACACAGGGTAGGGAAGTGAATGAGTCAGAGGG  750

seq1  AATTC  754
      |||||
seq2  AATTC  755

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Alignment Information