BAC Information

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BAC

Clone NameB6Ng01-099L02
Chromosome5 (Build37)
Map Location 45,469,101 - 45,470,285
singlet/doubletsinglet
Overlap genenone
Upstream geneProm1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L02.bB6Ng01-099L02.g
ACCDH909416DH909417
length6801,168
definitionDH909416|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L02, 5' end.DH909417|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcttgtggagtgggcttgaaatccaattagaaactagtaggt
tacttctataacatccatgccactattgcatcagtgagcatatcttgtca
agccacttgctattccagcttgcagggttcaccactgggtaagagtgttg
attactttacgctccttgtagcattcgtagcacatttcaggaccatgaaa
gctagtcagtaggcatgaagtttctagtttggtaccagcttgatatttct
aagttctgtgactccagtggtatcttcagcatcatggtcttatggcaaaa
ttacagaatgtaaacaagagcaatgacaatactgtataatatatgatagt
taaaacagaggaccaagactagctaacatgaagagcagaagatactatgg
aatacttagtcaccaatgggatgcctttaccattcttactctgtctaaga
ctcagggatcatcagagaaaggaatcagaaagattttgagagtcagaggt
cctggatgactgtagctaaacagtagtgtttggcagtggcacatgaaatc
acagtggtggtgactacgtgcacaggaacaaaccaggcaacaccacagca
cagatggggaggggtttatgaagtcccctaggcgaagagctatgggaagt
tgatgaaggttgggagtgggagagttggat
gaattctggtaagcaggctggggtaacttagttggaaatgtactttcctt
ataagcacaaggacctctgatcaatcatcagagcccatgaaagaatctgg
ttgaactggcatggatgtttaatgcaagaactgtgagatggaggtaggtg
aatgcctatggcttactttcaagttagactagcctacttggcatatttga
aaaccttatttcaaattaaagatgggtagattctgggaaatcgcacatat
ggtcatcccatggcttccattcaaatgtgtaaagacatacaaagtactca
catcactcacatatgcaattacacacacaggaaaaaaatgctggagaacc
catgtttaaactgtaacttctagaaagacctttttcaaataaacttttgg
gtgctgtcttagacagtgttctattgctgtgaagagacatcatgaccctg
gaacgcttacagagcagaacatttgattggggcttgctaacattcagaga
cttcgtccacgcaaatagattctaacttcattgaggatgatgacaactgc
tttccctagagagcaactttatggagaaaagcattttctaatctttccag
cccagtgtaatgttatggtttccaaactttgattgtttttagcaatagaa
accttgggcaatataataatacggaaccccagttgatattacagatgtga
attgtgcagctcttggtgagttgggaaagggagcccagaaaggctcacat
tctgcctcttgttggtgaatccacagagtgaccgagcctagaagctgaac
aaactggtattaagtttccctgaaagccttggtcaataaaaatcttggtc
atgtcattttggacccagcccatcaacagagcatttccttgcaaagcagt
ggtaagaatataaggcaaaggttgttagaagtgttgcattagcttttaag
caaaatgagatcttctactgctttgtagctttttgtgctcacatttagag
ggcccttctgaagaaaaatgacatgtacagacctcaaagtgctgatatgg
ctttctatgtagtacccagtaaaaactgggcagaagtcatgtccaaaatc
tgttcctaaatcttactagcctccaccatggtattcaaattggtatgcag
ccagggctttaggaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45469101_45470285
seq2: B6Ng01-099L02.g_66_1233 (reverse)

seq1  AACTTCCTAAAAAGCCCTGGCCCTGCCAAGGAGCCACATTTGTAATTAAC  50
      ||||||||  ||||||||||  ||||  |    ||| |||||  | || |
seq2  AACTTCCT--AAAGCCCTGG--CTGCATA----CCA-ATTTG--AATACC  39

seq1  ATGTTGGAAGCCCTAGTAAGACTAAGAGACAGATTTTTGGACATGACTTT  100
      ||| |||| |  ||||||||| | ||  ||||| ||||||||||||||| 
seq2  ATGGTGGAGG--CTAGTAAGATTTAGGAACAGA-TTTTGGACATGACTT-  85

seq1  CCTG-CCAGTTTCTTTCCTGGGTACTACATAGAAAGCCATATCAGCACTT  149
       ||| ||||||  ||| |||||||||||||||||||||||||||||||||
seq2  -CTGCCCAGTT--TTTACTGGGTACTACATAGAAAGCCATATCAGCACTT  132

seq1  TGAGGTCTGTACATGTCATTTTTTCCTCAG-AGGGCCCTCTTAATGTTGA  198
      |||||||||||||||||| |||||| |||| |||||||||| |||| |||
seq2  TGAGGTCTGTACATGTCA-TTTTTCTTCAGAAGGGCCCTCTAAATG-TGA  180

seq1  GCAC-AAAAGCTACAAAGCAGTAG-AGATCTCATTTTGCTTTAAAAGCTA  246
      |||| ||||||||||||||||||| |||||||||||||| ||||||||||
seq2  GCACAAAAAGCTACAAAGCAGTAGAAGATCTCATTTTGC-TTAAAAGCTA  229

seq1  ATGCAACACTTCTAACAACCTTTGCCTTATATTCTTACCACTGCTTTGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACACTTCTAACAACCTTTGCCTTATATTCTTACCACTGCTTTGCA  279

seq1  AGGAAATGCTCTGTTGATGGGCTGGGTCCAAAATGACATGACCAAGATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCTCTGTTGATGGGCTGGGTCCAAAATGACATGACCAAGATTT  329

seq1  TTATTGACCAAGGCTTTCAGGGAAACTTAATACCAGTTTGTTCAGCTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACCAAGGCTTTCAGGGAAACTTAATACCAGTTTGTTCAGCTTCT  379

seq1  AGGCTCGGTCACTCTGTGGATTCACCAACAAGAGGCAGAATGTGAGCCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGGTCACTCTGTGGATTCACCAACAAGAGGCAGAATGTGAGCCTT  429

seq1  TCTGGGCTCCCTTTCCCAACTCACCAAGAGCTGCACAATTCACATCTGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTCCCTTTCCCAACTCACCAAGAGCTGCACAATTCACATCTGTA  479

seq1  ATATCAACTGGGGTTCCGTATTATTATATTGCCCAAGGTTTCTATTGCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACTGGGGTTCCGTATTATTATATTGCCCAAGGTTTCTATTGCTA  529

seq1  AAAACAATCAAAGTTTGGAAACCATAACATTACACTGGGCTGGAAAGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCAAAGTTTGGAAACCATAACATTACACTGGGCTGGAAAGATT  579

seq1  AGAAAATGCTTTTCTCCATAAAGTTGCTCTCTAGGGAAAGCAGTTGTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCTTTTCTCCATAAAGTTGCTCTCTAGGGAAAGCAGTTGTCAT  629

seq1  CATCCTCAATGAAGTTAGAATCTATTTGCGTGGACGAAGTCTCTGAATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAATGAAGTTAGAATCTATTTGCGTGGACGAAGTCTCTGAATGT  679

seq1  TAGCAAGCCCCAATCAAATGTTCTGCTCTGTAAGCGTTCCAGGGTCATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCCCCAATCAAATGTTCTGCTCTGTAAGCGTTCCAGGGTCATGA  729

seq1  TGTCTCTTCACAGCAATAGAACACTGTCTAAGACAGCACCCAAAAGTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCACAGCAATAGAACACTGTCTAAGACAGCACCCAAAAGTTTA  779

seq1  TTTGAAAAAGGTCTTTCTAGAAGTTACAGTTTAAACATGGGTTCTCCAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAGGTCTTTCTAGAAGTTACAGTTTAAACATGGGTTCTCCAGC  829

seq1  ATTTTTTTCCTGTGTGTGTAATTGCATATGTGAGTGATGTGAGTACTTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCTGTGTGTGTAATTGCATATGTGAGTGATGTGAGTACTTTG  879

seq1  TATGTCTTTACACATTTGAATGGAAGCCATGGGATGACCATATGTGCGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTTACACATTTGAATGGAAGCCATGGGATGACCATATGTGCGAT  929

seq1  TTCCCAGAATCTACCCATCTTTAATTTGAAATAAGGTTTTCAAATATGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAATCTACCCATCTTTAATTTGAAATAAGGTTTTCAAATATGCC  979

seq1  AAGTAGGCTAGTCTAACTTGAAAGTAAGCCATAGGCATTCACCTACCTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGCTAGTCTAACTTGAAAGTAAGCCATAGGCATTCACCTACCTCC  1029

seq1  ATCTCACAGTTCTTGCATTAAACATCCATGCCAGTTCAACCAGATTCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACAGTTCTTGCATTAAACATCCATGCCAGTTCAACCAGATTCTTT  1079

seq1  CATGGGCTCTGATGATTGATCAGAGGTCCTTGTGCTTATAAGGAAAGTAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTCTGATGATTGATCAGAGGTCCTTGTGCTTATAAGGAAAGTAC  1129

seq1  ATTTCCAACTAAGTTACCCCAGCCTGCTTACCAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAACTAAGTTACCCCAGCCTGCTTACCAGAATTC  1168