BAC Information

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BAC

Clone NameB6Ng01-100F11
Chromosome5 (Build37)
Map Location 27,163,943 - 27,165,045
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100F11.bB6Ng01-100F11.g
ACCDH909868DH909869
length9141,100
definitionDH909868|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F11, 5' end.DH909869|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatcaaacaagaaatttaggagaaagtttttaatagaaagaaa
cagaataccaggaaaaaagtaagtttgaatctctgattagagcaaggcct
cctggctagcatttgagaatcatcacagtcatcgccatatctcgctaatc
ttgtatttccctcaacaatccagattattggtcacatggatgttctttct
tgacacctcttgccaggacatggaagttacctcagacatgtatttcatgg
agctaaaattattataaaatttttgcaccatgttgcaatgacataaactt
ggagttagtggcccaggttgaattagagctcacatcattccctcatcttc
tttaaaaactacattaggatttccatgttaccctatgatgatggatgtca
ttaaggaaaaaaaaaaacctggctgtcgagtgtgtaaaggacttatacat
gatcgacagaagtgcaaattagagcaactgacatggaactcaggatggag
atgcctcaaaaatcttcaactagaaggtctcttggatccagatgtggccg
cttggatatgcacacacccaaaggaatgaatggtagcttactgtgaagag
acctgcatacctgagttcttggagatcctattcacaacagcaaagtcgtg
aaatgatcagtgtgcccatcaacagataataggataaagaaactgtgttg
catggaagtgatggaatcctattcaaccagaaaagaaataatgtttttta
caagaaaatggatggaaccagaggccaccacgctaattaatgtaatcctc
acccaaataattaacatgcattttctgaaatcattgtatctcaaaaaaat
aaacggcttcatgaaaacagagagactggaggaggactggtgggcaggag
cgggaggaagggag

gaattcattatagtattcattgggttctggattgctctgactatccacga
acaattctgaaggaagttatgtggggtactgagaaaaatgtgtattcttt
attgtttgagtgatatatcctgtttatccatttttaacagaaatgaaaac
ctctgagaaatacttttaaatattttaatgtattcttttctatactagaa
ataataatcttaaaataaaatagcactaaaagatgtgtaaaattatgatt
gtaaggaagtatgctgtacacctatcacattcttaagatatcttttgata
taaatcaagtctccttatgttaggtttattatatcttcttgacaaaggga
gacatttattactgcatcatgtctccctgtctcattgaacaatatttgat
ttaaagactactctgccttgtgtgagcattgctctcctctgctgtccttc
atttccatctgcatggactatcttttttattcattacatcagtatgcaca
cattcgtaaacatgaggtaagtctactataagcagcatactcatgaatct
tttggtttaaaaaatccatttttcaataattcaatttgtttacattcaag
ctaactttgagtgataaaactacttcctatttttccttgttttctgggtt
ttagtagacaggctgtgtttttttctcaagctgtcttcctttatgtttaa
tgtttctggtggtatattaaaaatggttttgtttgttgtgtgtctcctcc
aggcctttgctgtttggtaactgggttcaaacatattacaccttgaattt
tcttcatgctggcaataagtaaagttttattgcatacaactatcagattt
tattctccatattttaagtatttagtgtctgaatttacatcatctatatt
atgcatctgttcatgatttatttagctatatttatttctaattattttgt
cctgggaatttcataccaggaatgatttgacaccatcactgaaggcttag
aatgttctggatctagatgatcctgagaccaataagtttctggtgtccca
tctagtcttctacttcctttttgaaaaatgggccagaaggacatctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27163943_27165045
seq2: B6Ng01-100F11.g_69_1168

seq1  GAATTCATTATAGTATTCATTGGGTTCTGGATTGCTCTGACTATCCACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATAGTATTCATTGGGTTCTGGATTGCTCTGACTATCCACGA  50

seq1  ACAATTCTGAAGGAAGTTATGTGGGGTACTGAGAAAAATGTGTATTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTGAAGGAAGTTATGTGGGGTACTGAGAAAAATGTGTATTCTTT  100

seq1  ATTGTTTGAGTGATATATCCTGTTTATCCATTTTTAACAGAAATGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGAGTGATATATCCTGTTTATCCATTTTTAACAGAAATGAAAAC  150

seq1  CTCTGAGAAATACTTTTAAATATTTTAATGTATTCTTTTCTATACTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAAATACTTTTAAATATTTTAATGTATTCTTTTCTATACTAGAA  200

seq1  ATAATAATCTTAAAATAAAATAGCACTAAAAGATGTGTAAAATTATGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCTTAAAATAAAATAGCACTAAAAGATGTGTAAAATTATGATT  250

seq1  GTAAGGAAGTATGCTGTACACCTATCACATTCTTAAGATATCTTTTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAGTATGCTGTACACCTATCACATTCTTAAGATATCTTTTGATA  300

seq1  TAAATCAAGTCTCCTTATGTTAGGTTTATTATATCTTCTTGACAAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAGTCTCCTTATGTTAGGTTTATTATATCTTCTTGACAAAGGGA  350

seq1  GACATTTATTACTGCATCATGTCTCCCTGTCTCATTGAACAATATTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATTACTGCATCATGTCTCCCTGTCTCATTGAACAATATTTGAT  400

seq1  TTAAAGACTACTCTGCCTTGTGTGAGCATTGCTCTCCTCTGCTGTCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACTACTCTGCCTTGTGTGAGCATTGCTCTCCTCTGCTGTCCTTC  450

seq1  ATTTCCATCTGCATGGACTATCTTTTTTATTCATTACATCAGTATGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATCTGCATGGACTATCTTTTTTATTCATTACATCAGTATGCACA  500

seq1  CATTCGTAAACATGAGGTAAGTCTACTATAAGCAGCATACTCATGAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTAAACATGAGGTAAGTCTACTATAAGCAGCATACTCATGAATCT  550

seq1  TTTGGTTTAAAAAATCCATTTTTCAATAATTCAATTTGTTTACATTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTAAAAAATCCATTTTTCAATAATTCAATTTGTTTACATTCAAG  600

seq1  CTAACTTTGAGTGATAAAACTACTTCCTATTTTTCCTTGTTTTCTGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTGAGTGATAAAACTACTTCCTATTTTTCCTTGTTTTCTGGGTT  650

seq1  TTAGTAGACAGGCTGTGTTTTTTTCTCAAGCTGTCTTCCTTTATGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGACAGGCTGTGTTTTTTTCTCAAGCTGTCTTCCTTTATGTTTAA  700

seq1  TGTTTCTGGTGGTATATTAAAAATGGTTTTG-TTGTTGTGTGTCTCCTCC  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTCTGGTGGTATATTAAAAATGGTTTTGTTTGTTGTGTGTCTCCTCC  750

seq1  AGGCCTTTGCTGTTTGGTAACTGGGTTCAAACATATTACACCTTGAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTGCTGTTTGGTAACTGGGTTCAAACATATTACACCTTGAATTT  800

seq1  TCTTCATGCTGGCAATAAGTAAAGTTTTATTGCATACAACTATCAGATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGCTGGCAATAAGTAAAGTTTTATTGCATACAACTATCAGATTT  850

seq1  TATTCTCCATATTTTAAGTATTTAGTGTCTGAATTTACATCATCTATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCATATTTTAAGTATTTAGTGTCTGAATTTACATCATCTATATT  900

seq1  ATGCATCTGTTCATGATTTATTTTAGCTATATTTATTTCTAATTATTTTG  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCATCTGTTCATGATTTA-TTTAGCTATATTTATTTCTAATTATTTTG  949

seq1  TCCTTGGAATTTCATACCAGGAATGAATTGCACACCATCACTGAAGGCTT  999
      |||| ||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TCCTGGGAATTTCATACCAGGAATGATTTG-ACACCATCACTGAAGGCTT  998

seq1  AG-ATGTTCTGAATCTAGATGATTCTGAGAACCAATAAGTTTCCGGTTGC  1048
      || |||||||| ||||||||||| ||||| ||||||||||||| |||  |
seq2  AGAATGTTCTGGATCTAGATGATCCTGAG-ACCAATAAGTTTCTGGTGTC  1047

seq1  CCATCTAGTCTCATAACTTCCTTTTTGAAATAATGGGTCAGAAGTCATTC  1098
      |||||||||||  | ||||||||||||||| |||||| ||||||    ||
seq2  CCATCTAGTCTTCT-ACTTCCTTTTTGAAA-AATGGGCCAGAAGGACATC  1095

seq1  TTTCT  1103
      |||||
seq2  TTTCT  1100


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