BAC Information

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BAC

Clone NameB6Ng01-100H15
Chromosome5 (Build37)
Map Location 14,995,109 - 14,996,193
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H15.bB6Ng01-100H15.g
ACCDH909964DH909965
length1,1141,085
definitionDH909964|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H15, 5' end.DH909965|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttgaatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggttt
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttagttcccatttgtcaattctcgatcttacaacacaagccattgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaatacttttccccac
tttctcttctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagccccaattgttgaaaat
gttgtctttcttccactggatggttttagctccctgtagaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctgttccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagatga
atttgcagattgctctttctaattcgttgaagaattgagttggaattttg
atggggattgcatgaatctgtagattgcttttggcaagatagccattttt
acaatgttgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttctttaatttctttcttcagagacttgaagtttttatcataca
gatctttcacttccttagttagagtcacgccaagatattttatattattt
gtgactattgagaaggtgttgtttccctaaattctttctcagcctgttat
ctttgtgtagagaaaaggccattgactggtttgaggttaatttatttcca
gcacctccccaaagctggtttatcagggtagggatcctctggtgggaact
ttaggggcacttaa

gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgtgtgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gggctttctgttcccaagcaaaccacagcactgatctccatctgtttttc
tctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaaa
agacaacttcagaaaacaaaagagaagcctcaaatgggccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggag
ttcaccagggagaggagctctgactccaaaatagtcacttttccattttg
tcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgt
tccaggaagaaaacaggtctatttgttgcaagaactgcattctcacttgt
atccaatgctgataactggcagcagaaactctgggagggtcacatctatg
tggtgacacaagaagctttttccagggtctagcacactcttaccaaagcc
tcttgccctggttcactatctcatctaaatgctcactcgcattaagggac
aacatggtgtaattggaaatggacagacacatttacttgtagttttggcc
ataactggagaaagagaaagtctcagctacattccaccaggcccatagca
ctctcagaccaaatagaaggatgaaagataggaaaatacacactttagtg
tcagctgtgggcccagtttctaggagatgggacatggtcgttttcctcca
gtgccagagatgatgccctttgggtgggccatttcactcactgtttggta
gttctgcagggagtcttgcttctttatggcccctttacattagcgtgaca
caattagaaaaaaacattcaacaaagcagaacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14995109_14996193
seq2: B6Ng01-100H15.g_71_1149 (reverse)

seq1  TCTGCTTTGTTTGAATGTTTTTTTCTTAAATGTTGTCACGCTTAACTGTA  50
      ||||||||| ||||||||||||||||  |||  |||||||||  | ||||
seq2  TCTGCTTTG-TTGAATGTTTTTTTCT--AATTGTGTCACGCT--AATGTA  45

seq1  AAGGGGCCAT-AAGAAGCAAGACTCCCTGCAGGAACTACCAAACTGTGAG  99
      |||||||||| |||||||||||||||||||| |||||||||||| |||||
seq2  AAGGGGCCATAAAGAAGCAAGACTCCCTGCA-GAACTACCAAACAGTGAG  94

seq1  TGAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAGGAAAATGA  149
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TG-AAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAGGAAAACGA  143

seq1  CCATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACTGAAGTGTGT  199
      |||| ||||||||||| |||||||||||||||||||||||| ||||||||
seq2  CCATGTCCCATCTCCTAGAAACTGGGCCCACAGCTGACACTAAAGTGTGT  193

seq1  ATTTTCCTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCTATGGGCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCTATGGGCCTG  243

seq1  GTGGAATGTAGCTGAGACTTTCTCCTTGTCCAGTTATGGCCAAAACTATA  299
      |||||||||||||||||||||||| || |||||||||||||||||||| |
seq2  GTGGAATGTAGCTGAGACTTTCTCTTTCTCCAGTTATGGCCAAAACTACA  293

seq1  AGTAAATGTGTCTGTCCATTTCCAATTACAACATGTTGTCCCTTAATGCG  349
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTAAATGTGTCTGTCCATTTCCAATTACACCATGTTGTCCCTTAATGCG  343

seq1  AGTGAGCATTTAGATGAGATAGTGAACCAGGGCAAGAGGCTTTGGTAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCATTTAGATGAGATAGTGAACCAGGGCAAGAGGCTTTGGTAAGA  393

seq1  GTGTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACCACATAGATGTGACC  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGTGCTAGACCCTGGAAAAAGCTTCTTGTGTCACCACATAGATGTGACC  443

seq1  CTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAAGTGAGAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAAGTGAGAATG  493

seq1  CAGTTCTTGCAACAAAGAGACCTGTTTTCTTCCTGGAACATCCTTTCCTT  549
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGTTCTTGCAACAAATAGACCTGTTTTCTTCCTGGAACATCCTTTCCTT  543

seq1  CCTTTAGCCAGCACCCATGGCCTTTTGCCATCATTGACAAAATGTTAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  CCTTTAGCCAGCACCCATGGCCTTTTGCCATCATTGACAAAATGGAAAAG  593

seq1  TGACTATTTTGGAGTCAGAGTTCCTCTCCCTTGTGAACTCCTGCTGGCAG  649
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TGACTATTTTGGAGTCAGAGCTCCTCTCCCTGGTGAACTCCTGCTGGCAG  643

seq1  TAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTGGCTTTTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTGGCTTTTGGC  693

seq1  CCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTCTGAACAAAAAG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTTTGAACAAAAAG  743

seq1  TGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGATTTTGTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGATTTTGTGCT  793

seq1  TTGTTTTTCAATTTGGAAGGATGTTTTAAGAGTCAGAGAAAAACAGATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCAATTTGGAAGGATGTTTTAAGAGTCAGAGAAAAACAGATGG  843

seq1  AGATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGCCCTGACTCAGTGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGCCCTGACTCAGTGTGG  893

seq1  AGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATGACTTTCCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATGACTTTCCAC  943

seq1  AGCCATCCAGCATGGCACCCAGTGTGCATGAAGTACATCCTGAATCCATG  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCCATCCAGCATGGCACCCAGTGTGCATGAAGTGCATCCTGAATCCATG  993

seq1  CAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACCCATGAACACTTCTCC  1049
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACACATGAACACTTCTCC  1043

seq1  TCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATT  1085
      ||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATT  1079


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