BAC Information

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BAC

Clone NameB6Ng01-100M13
Chromosome5 (Build37)
Map Location 129,633,407 - 129,776,724
singlet/doubletdoublet
Overlap geneGpr133, LOC100039355
Upstream geneTmem132d, Fzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441
Downstream geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100M13.bB6Ng01-100M13.g
ACCDH910173DH910174
length1,158945
definitionDH910173|Mus musculus domesticus DNA, BAC clone: B6Ng01-100M13, 5' end.DH910174|Mus musculus domesticus DNA, BAC clone: B6Ng01-100M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,775,555 - 129,776,724)(129,633,407 - 129,634,352)
sequence
gaattcatcacgggtgggagaggctggtacacaggtcagaccctggagat
gccaactgtacaggaatagctccagcaaccaggccctgatccctcctgcc
acggtcttccacaacctccatggggtcaagtcagcagggtagggcgatgg
aagaagaagtgtctggcatcttcttccctttctaccccatcagagaaaag
aagaagaaagtacctacttagaatttgggaagatccccgaagtgtccccg
ggggaagtgaccctgtatgttggttagcaagtggcactctccttatcctt
ggagcacctgatatatacacagtgcatctttctctggattccagggaggc
tgtgctggccctgagccctgcccccacccctaccccacttctctctcctc
agctcctcccaaggctcactaacacctgctgcagcagtttttccggtcct
ggtgcacctcactctgaaagcattttccattgtcttgcagaagctccagt
tgtgacagccccaccctgtcctttgtccctcataattacctctcatagct
atactgtggcaggctggattaagccaaaaagtcagagctaggtgagaacg
cggctcagatgtcctttggttagcagcaggtatcatccagcagtgcagga
tgctgttgctaaaattaagagagatgccccctgtgttcctcccaccaccc
ccacaagatgcacccttccttgaaggctctggtgcctggggctatgacga
cgggtgccatagcaacccatcaggtagagtactgagctggggctaattta
gtgacacactggccctggtgaatggagctctaagtcaccttgaacacaaa
gtcagcctgtccaggattaggccagtccccaagggttacagagagacaga
agtactgtattcaatccctctgtgagtgtctggtcatggccatgcacttg
gtgagagaaaggagtcaagatttaaaggaaaacaggtgcgggcttggcca
ggcttgcagactgtgtgctagaactcagacacgttggcacccaaacttcc
gagattcttcaagaaatttccaccacatgatcagcgcgaatgtgccttag
gatggaatagctaacctacacacggatcttgcagctggggctctctgata
ggtggttg
gaattctttcctcatttttgtagaatagttttcctcagttgtgtgtgtgt
gtgtatgtatgtgtgtgcatgcatgctcgtgcacacatgagcatgcacac
gcactcacgcacacatgcacttatgattctcatgactgtgtgggtatgta
cgtctatacacacactccctatgttcattactgtcaatctagaagacaac
tttgacttctgtcccttagcctttacccaccaatcatgtgactatcgcat
gtgcatttcaggagttgcttttattattaataacaaagataattttattc
tgtccctctcagcccttgtgcctctttccctgactattgtaatagcgggg
actgccaggggttgtgatgggggatatcctcggctagttctggaccatac
tgagattttcaactagggttggagtctgattggtgggtgcttgggtaggg
ccttttaaacaagtctttttttttttttttttttttttaacgttaaaatc
ctaggatgtttattacaaaggtaaaccccgatccttgagatgggcttatc
ggtaggatttctggtatcgggcacgggcaccaggacctccaaactttttg
gattcgcagcgacgggggtcagctacaagcagggtccgatcgtattggat
gaggatatctttgatctccttcttggaggcttcaccacatatttttggta
ataagctaccagggcctttgagatggactgtcggatggcataaatttggg
ccacatgtccaccacctttcacacggacccgaatatccacaccagcaaat
cgctctttgcccagaagcaaaacaggctccagtaacttgtactgcagcgg
tgcgcggctcgatatcttccgggggacgtccgtcaccttggatgagccca
tttcccggttgcagtggggccaagccgtggctgttttcttgcgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_129775555_129776724
seq2: B6Ng01-100M13.b_44_1201 (reverse)

seq1  CAACCATCCTTATCAG-GAGCCCCAGCTGCTAGGACTCCTGTTGTAGGTT  49
      ||||||  | |||||| ||||||||||||| ||   |||   ||||||||
seq2  CAACCA--CCTATCAGAGAGCCCCAGCTGCAAG--ATCCGTGTGTAGGTT  46

seq1  AGCTATTTCCTACCTCGAGCACTTTCTGCGCTGATTCATGTGGTGGGAAC  99
      ||||| ||||  |||   |||| ||| ||||||| ||||||||||| || 
seq2  AGCTA-TTCCATCCTAAGGCACATTC-GCGCTGA-TCATGTGGTGGAAAT  93

seq1  TCTCTGA--GATCTCGGGAAAGGTTTTGGGTGCCAACGTGTCCTGAGTCT  147
      |   |||   |||||||  |||  ||||||||||||||||| ||||||  
seq2  TTCTTGAAGAATCTCGG--AAG--TTTGGGTGCCAACGTGT-CTGAGTTC  138

seq1  TAGCCACACAGTCTGCAAGCCTGGCCAAGCCCGCACCTTGTTTTCCTTTA  197
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAG-CACACAGTCTGCAAGCCTGGCCAAGCCCGCACC-TGTTTTCCTTTA  186

seq1  AATCTGGACTCCTTTCTCTTCACCAAGTGCATGGCCATGACCAGACACTC  247
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  AATCTTGACTCCTTTCTC-TCACCAAGTGCATGGCCATGACCAGACACTC  235

seq1  ACAGAGGGATTGAATACAGTACTTCTGTCTCTCTGTAACCCTTGGGGACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGATTGAATACAGTACTTCTGTCTCTCTGTAACCCTTGGGGACT  285

seq1  GGCCTAATCCTGGACAGGCTGACTTTGTGTTCAAGGTGACTTAGAGCTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAATCCTGGACAGGCTGACTTTGTGTTCAAGGTGACTTAGAGCTCC  335

seq1  ATTCACCAGGGCCAGTGTGTCACTAAATTAGCCCCAGCTCAGTACTCTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAGGGCCAGTGTGTCACTAAATTAGCCCCAGCTCAGTACTCTAC  385

seq1  CTGATGGGTTGCTATGGCACCCGTCGTCATAGCCCCAGGCACCAGAGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGTTGCTATGGCACCCGTCGTCATAGCCCCAGGCACCAGAGCCT  435

seq1  TCAAGGAAGGGTGCATCTTGTGGGGGTGGTGGGAGGAACACAGGGGGCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAGGGTGCATCTTGTGGGGGTGGTGGGAGGAACACAGGGGGCAT  485

seq1  CTCTCTTAATTTTAGCAACAGCATCCTGCACTGCTGGATGATACCTGCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAATTTTAGCAACAGCATCCTGCACTGCTGGATGATACCTGCTG  535

seq1  CTAACCAAAGGACATCTGAGCCGCGTTCTCACCTAGCTCTGACTTTTTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAAGGACATCTGAGCCGCGTTCTCACCTAGCTCTGACTTTTTGG  585

seq1  CTTAATCCAGCCTGCCACAGTATAGCTATGAGAGGTAATTATGAGGGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCAGCCTGCCACAGTATAGCTATGAGAGGTAATTATGAGGGACA  635

seq1  AAGGACAGGGTGGGGCTGTCACAACTGGAGCTTCTGCAAGACAATGGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGGGTGGGGCTGTCACAACTGGAGCTTCTGCAAGACAATGGAAA  685

seq1  ATGCTTTCAGAGTGAGGTGCACCAGGACCGGAAAAACTGCTGCAGCAGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCAGAGTGAGGTGCACCAGGACCGGAAAAACTGCTGCAGCAGGT  735

seq1  GTTAGTGAGCCTTGGGAGGAGCTGAGGAGAGAGAAGTGGGGTAGGGGTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAGCCTTGGGAGGAGCTGAGGAGAGAGAAGTGGGGTAGGGGTGG  785

seq1  GGGCAGGGCTCAGGGCCAGCACAGCCTCCCTGGAATCCAGAGAAAGATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGCTCAGGGCCAGCACAGCCTCCCTGGAATCCAGAGAAAGATGC  835

seq1  ACTGTGTATATATCAGGTGCTCCAAGGATAAGGAGAGTGCCACTTGCTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTATATATCAGGTGCTCCAAGGATAAGGAGAGTGCCACTTGCTAA  885

seq1  CCAACATACAGGGTCACTTCCCCCGGGGACACTTCGGGGATCTTCCCAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATACAGGGTCACTTCCCCCGGGGACACTTCGGGGATCTTCCCAAA  935

seq1  TTCTAAGTAGGTACTTTCTTCTTCTTTTCTCTGATGGGGTAGAAAGGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTAGGTACTTTCTTCTTCTTTTCTCTGATGGGGTAGAAAGGGAA  985

seq1  GAAGATGCCAGACACTTCTTCTTCCATCGCCCTACCCTGCTGACTTGACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCCAGACACTTCTTCTTCCATCGCCCTACCCTGCTGACTTGACC  1035

seq1  CCATGGAGGTTGTGGAAGACCGTGGCAGGAGGGATCAGGGCCTGGTTGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGGTTGTGGAAGACCGTGGCAGGAGGGATCAGGGCCTGGTTGCT  1085

seq1  GGAGCTATTCCTGTACAGTTGGCATCTCCAGGGTCTGACCTGTGTACCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTCCTGTACAGTTGGCATCTCCAGGGTCTGACCTGTGTACCAG  1135

seq1  CCTCTCCCACCCGTGATGAATTC  1170
      |||||||||||||||||||||||
seq2  CCTCTCCCACCCGTGATGAATTC  1158

seq1: chr5_129633407_129634352
seq2: B6Ng01-100M13.g_66_1010

seq1  GAATTCTTTCCTCATTTTTGTAGAATAGTTTTCCTCAGTTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCATTTTTGTAGAATAGTTTTCCTCAGTTGTGTGTGTGT  50

seq1  GTGTATGTATGTGTGTGCATGCATGCTCGTGCACACATGAGCATGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATGTGTGTGCATGCATGCTCGTGCACACATGAGCATGCACAC  100

seq1  GCACTCACGCACACATGCACTTATGATTCTCATGACTGTGTGGGTATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACGCACACATGCACTTATGATTCTCATGACTGTGTGGGTATGTA  150

seq1  CGTCTATACACACACTCCCTATGTTCATTACTGTCAATCTAGAAGACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATACACACACTCCCTATGTTCATTACTGTCAATCTAGAAGACAAC  200

seq1  TTTGACTTCTGTCCCTTAGCCTTTACCCACCAATCATGTGACTATCGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTCTGTCCCTTAGCCTTTACCCACCAATCATGTGACTATCGCAT  250

seq1  GTGCATTTCAGGAGTTGCTTTTATTATTAATAACAAAGATAATTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTCAGGAGTTGCTTTTATTATTAATAACAAAGATAATTTTATTC  300

seq1  TGTCCCTCTCAGCCCTTGTGCCTCTTTCCCTGACTATTGTAATAGCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCTCAGCCCTTGTGCCTCTTTCCCTGACTATTGTAATAGCGGGG  350

seq1  ACTGCCAGGGGTTGTGATGGGGGATATCCTCGGCTAGTTCTGGACCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGGGTTGTGATGGGGGATATCCTCGGCTAGTTCTGGACCATAC  400

seq1  TGAGATTTTCAACTAGGGTTGGAGTCTGATTGGTGGGTGCTTGGGTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTCAACTAGGGTTGGAGTCTGATTGGTGGGTGCTTGGGTAGGG  450

seq1  CCTTTTAAACAAGTCTTTTTTTTTTTTTTTTTTTTTTTAACGTTAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAACAAGTCTTTTTTTTTTTTTTTTTTTTTTTAACGTTAAAATC  500

seq1  CTAGGATGTTTATTACAAAGGTAAACCCCGATCCTTGAGATGGGCTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGTTTATTACAAAGGTAAACCCCGATCCTTGAGATGGGCTTATC  550

seq1  GGTAGGATTTCTGGTATCGGGCACGGGCACCAGGACCTCCAAACTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATTTCTGGTATCGGGCACGGGCACCAGGACCTCCAAACTTTTTG  600

seq1  GATTCGCAGCGACGGGGGTCAGCTACAAGCAGGGTCCGATCGTATTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGCAGCGACGGGGGTCAGCTACAAGCAGGGTCCGATCGTATTGGAT  650

seq1  GAGGATATCTTTGATCTCCTTCTTGGAGGCTTCATCCACATATTTTTGGT  700
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGGATATCTTTGATCTCCTTCTTGGAGGCTTCA-CCACATATTTTTGGT  699

seq1  AATAAGCTACCAGGGCCTTTGAGATGGACTGTCGGATGGCATAAATTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTACCAGGGCCTTTGAGATGGACTGTCGGATGGCATAAATTTGG  749

seq1  GCCACATGTCCACCACCCTTCACACGGACCCGAATATCCACACCAGCAAA  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCACATGTCCACCACCTTTCACACGGACCCGAATATCCACACCAGCAAA  799

seq1  TCGCTCCTTGCCCAGAAGCAAAACAGGCTCCAGTAACTTGTACTGCAGC-  849
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TCGCTCTTTGCCCAGAAGCAAAACAGGCTCCAGTAACTTGTACTGCAGCG  849

seq1  GTGCGCGGCTCGATCATC-TCCAGGGGACGTCCGTTCACCTT-GATGAGC  897
      |||||||||||||| ||| ||| ||||||||||| ||||||| |||||||
seq2  GTGCGCGGCTCGAT-ATCTTCCGGGGGACGTCCG-TCACCTTGGATGAGC  897

seq1  CCATTTCCCCGTTTGCAGTGGGCCACAGCCGTGGCTGTTTTCTTGCGTC  946
      |||||| |||| |||||||||| |  |||||||||||||||||||||||
seq2  CCATTT-CCCGGTTGCAGTGGGGCCAAGCCGTGGCTGTTTTCTTGCGTC  945