BAC Information

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BAC

Clone NameB6Ng01-101B07
Chromosome5 (Build37)
Map Location 122,080,476 - 122,135,835
singlet/doubletdoublet
Overlap geneAcad10, Brap
Upstream geneLOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik
Downstream geneAtxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101B07.bB6Ng01-101B07.g
ACCDH910382DH910383
length2711,100
definitionDH910382|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B07, 5' end.DH910383|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,080,476 - 122,080,746)(122,134,720 - 122,135,835)
sequence
tctatacaggcttttgtcagctgcctaaacttgcctgccttgcccatagg
agattccagctgtgtggcgccctgagatggactttccacatgcagtggtt
tctgctggccatgtgtgtgtgtgtttgggggtgggggggacatgttctca
caggctgagggaactgtgaagactgttcctcataagcatacagagacatg
cccatcacttcacacatatgtgcatattccacgttagtcagccctgttcc
gtacttttctttaggatcagt
gaattcctttagtgctaggaaggttacgtcatgtcatagatttaccctgg
aacccaactgcaagtgcgccaactgaataaatacaatggaaaaccgcaca
agcctgggggctacccagctggaaggcagaatggccatgaggtgactcac
ccttgggaagtgctgccaacccttccccctcttttagtctcctcacacta
cactcaacaaatgaaggagccacatgaccacagttcgtcctcagacgtac
ttattagggcccacacttccgctcagcaaaggtcccagcagaccctgtgg
tgcccaggaagtctcagggacaagtctctgatggtcacttgcccctcttg
ctgcggccctttctggactgcagcttcccaccggccccggaagagggtgg
gttgggcgctgaggccatggcgatgttgatctggccttcctggatctcct
gcctcgtctccgcaggcaggtggctgatctgctgctgtgtctccaggtag
aacatgacatcgcgcagctgctcctggatctcggtgatctgcaggtcttt
ctgggcacaggtctccttcagcagcttctcctcctccttgagctggttct
gcagcaccagctggttggcgcgcagacacttgttcagctcctgctcctcc
tgcagctccgtgctgagcttggccactctggtgttcagctgggtacacct
ggagcaaaacagagggagacagagctggctccacctgctctctgtccctt
tctgctcagggacctcagaagccagcaatgacacccctcctccccactgc
agcggcagccagtgttcctgacacactgctcatgcgttttgctccatgct
cagcatcattaggccattaggtcctgtcccagggggagtctgtgacacca
gcttaaacaaatggttttcttacttgctcttagccaggatggctcagagc
tgcagcagaatggaaggtacgtgtccatggattgcaggaggttggtgtca
ctggcacccacctcagtgaacagcattgactactttggtttcacattatt
catgtgttagtgcatgcggggccaagcaatgtgttgggagtcagtctctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122080476_122080746
seq2: B6Ng01-101B07.b_52_322

seq1  TCTATACAGGCTTTTGTCAGCTGCCTAAACTTGCCTGCCTTGCCCATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGGCTTTTGTCAGCTGCCTAAACTTGCCTGCCTTGCCCATAGG  50

seq1  AGATTCCAGCTGTGTGGCGCCCTGAGATGGACTTTCCACATGCAGTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGCTGTGTGGCGCCCTGAGATGGACTTTCCACATGCAGTGGTT  100

seq1  TCTGCTGGCCATGTGTGTGTGTGTTTGGGGGTGGGGGGGACATGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGCCATGTGTGTGTGTGTTTGGGGGTGGGGGGGACATGTTCTCA  150

seq1  CAGGCTGAGGGAACTGTGAAGACTGTACCTCAGAAGCATACAGAGACATG  200
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  CAGGCTGAGGGAACTGTGAAGACTGTTCCTCATAAGCATACAGAGACATG  200

seq1  CCCATCACTTCACACAGATGTGCATATTCCACGTTAGTCAGCCCTGCTCC  250
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CCCATCACTTCACACATATGTGCATATTCCACGTTAGTCAGCCCTGTTCC  250

seq1  GTACTTTTTCTCAGGATCAGT  271
      ||||||||  | |||||||||
seq2  GTACTTTTCTTTAGGATCAGT  271

seq1: chr5_122134720_122135835
seq2: B6Ng01-101B07.g_69_1168 (reverse)

seq1  AAGA-ACTGACTTCC-ACACATGTGCCTTGGCACACGCATGCACATACAC  48
      |||| ||||||| || |||||| || |||||| | |||||||||  ||||
seq2  AAGAGACTGACTCCCAACACAT-TG-CTTGGC-CCCGCATGCACTAACAC  47

seq1  ATGAATAAATGTGGAAACCAAAGTAGGTCCAATTGCTGTTCCACTTGAGG  98
      |||||| ||||| |||||||||||| |||  | ||||||| ||| |||||
seq2  ATGAAT-AATGT-GAAACCAAAGTA-GTC--AATGCTGTT-CAC-TGAGG  90

seq1  TGGGTGCCAGGTGGAACACCAACCTCCCTGCAATCCATGGACACGTACCT  148
      ||||||||| |||  |||||||||| ||||||||||||||||||||||||
seq2  TGGGTGCCA-GTG--ACACCAACCT-CCTGCAATCCATGGACACGTACCT  136

seq1  TCCATTTCTGCCTGCAGCTTCTGAGCCATCTTGGCTAAGAGCAAGTTAGG  198
      |||| ||||| ||||||| ||||||||||| |||||||||||||| || |
seq2  TCCA-TTCTG-CTGCAGC-TCTGAGCCATCCTGGCTAAGAGCAAG-TAAG  182

seq1  AAAACCATTTTGTTTAAGCTGGTGTCACAGACTCCCCCTGGGACAGGACC  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCA-TTTGTTTAAGCTGGTGTCACAGACTCCCCCTGGGACAGGACC  231

seq1  TAATGG-CTAATGATGCTGAGCATGGAGCAAAACGCATGAGCAGTGTGTC  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCCTAATGATGCTGAGCATGGAGCAAAACGCATGAGCAGTGTGTC  281

seq1  AGGAACACTGGCTGCCGCTGCAGTGGGGAGGAGGGGTGTCATTGCTGGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTGGCTGCCGCTGCAGTGGGGAGGAGGGGTGTCATTGCTGGCT  331

seq1  TCTGAGGTCCCTGAGCAGAAAGGGACAGAGAGCAGGTGGAGCCAGCTCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCCCTGAGCAGAAAGGGACAGAGAGCAGGTGGAGCCAGCTCTG  381

seq1  TCTCCCTCTGTTTTGCTCCAGGTGTACCCAGCTGAACACCAGAGTGGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGTTTTGCTCCAGGTGTACCCAGCTGAACACCAGAGTGGCCA  431

seq1  AGCTCAGCACGGAGCTGCAGGAGGAGCAGGAGCTGAACAAGTGTCTGCGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCACGGAGCTGCAGGAGGAGCAGGAGCTGAACAAGTGTCTGCGC  481

seq1  GCCAACCAGCTGGTGCTGCAGAACCAGCTCAAGGAGGAGGAGAAGCTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCAGCTGGTGCTGCAGAACCAGCTCAAGGAGGAGGAGAAGCTGCT  531

seq1  GAAGGAGACCTGTGCCCAGAAAGACCTGCAGATCACCGAGATCCAGGAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGACCTGTGCCCAGAAAGACCTGCAGATCACCGAGATCCAGGAGC  581

seq1  AGCTGCGCGATGTCATGTTCTACCTGGAGACACAGCAGCAGATCAGCCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGCGATGTCATGTTCTACCTGGAGACACAGCAGCAGATCAGCCAC  631

seq1  CTGCCTGCGGAGACGAGGCAGGAGATCCAGGAAGGCCAGATCAACATCGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCGGAGACGAGGCAGGAGATCCAGGAAGGCCAGATCAACATCGC  681

seq1  CATGGCCTCAGCGCCCAACCCACCCTCTTCCGGGGCCGGTGGGAAGCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTCAGCGCCCAACCCACCCTCTTCCGGGGCCGGTGGGAAGCTGC  731

seq1  AGTCCAGAAAGGGCCGCAGCAAGAGGGGCAAGTGACCATCAGAGACTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAAAGGGCCGCAGCAAGAGGGGCAAGTGACCATCAGAGACTTGT  781

seq1  CCCTGAGACTTCCTGGGCACCACAGGGTCTGCTGGGACCTTTGCTGAGCG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACTTCCTGGGCACCACAGGGTCTGCTGGGACCTTTGCTGAGCG  831

seq1  GAAGTGTGGGCCCTAATAAGTACGTCTGAGGACGAACTGTGGTCATGTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGGGCCCTAATAAGTACGTCTGAGGACGAACTGTGGTCATGTGG  881

seq1  CTCCTTCATTTGTTGAGTGTAGTGTGAGGAGACTAAAAGAGGGGGAAGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATTTGTTGAGTGTAGTGTGAGGAGACTAAAAGAGGGGGAAGGG  931

seq1  TTGGCAGCACTTCCCAAGGGTGAGTCACCTCATGGCCATTCTGCCTTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCACTTCCCAAGGGTGAGTCACCTCATGGCCATTCTGCCTTCCA  981

seq1  GCTGGGTAGCCCCCAGGCTTGTGCGGTTTTCCATTGTATTTATTCAGTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTAGCCCCCAGGCTTGTGCGGTTTTCCATTGTATTTATTCAGTTG  1031

seq1  GCGCACTTGCAGTTGGGTTCCAGGGTAAATCTATGACATGACGTAACCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACTTGCAGTTGGGTTCCAGGGTAAATCTATGACATGACGTAACCTT  1081

seq1  CCTAGCACTAAAGGAATTC  1116
      |||||||||||||||||||
seq2  CCTAGCACTAAAGGAATTC  1100