BAC Information

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BAC

Clone NameB6Ng01-101H11
Chromosome5 (Build37)
Map Location 21,767,971 - 21,920,976
singlet/doubletdoublet
Overlap geneReln
Upstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101H11.bB6Ng01-101H11.g
ACCDH910641DH910642
length1,077393
definitionDH910641|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H11, 5' end.DH910642|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,767,971 - 21,769,061)(21,920,578 - 21,920,976)
sequence
gaattccctcaaagtcaattttctggagaagaaactaagagctgatatct
aaccaaaacaccctttatttatctcctggagtcttgttcagccattattc
cagttatatcccgtccagcctgagttaggagggattatgtgcatgaccct
agtgtaaatcccagggcatcccacagctgtggcggttaggatgcaggcct
cctgtcttactagcctgactgtgtatgtcctgttccttatgaggcacaag
actaatccacagcgggcacagaaaaagatcacattggctcagccaactac
tcccacaccttgtgtgcttcacacttaaatgagagctcctccagctgcct
tttccccaactgctgatcaacacttcagaagaaaggctgggaagctcctg
catccagctctgaacaaacgctccatctgtcaggtcctcaagatatggac
tttactgtctgccgcactgtagtgtgtatcacaccttactgtctgtcaca
ctacagtgtgtatcacaccttgctgcctgtcacactacagtgtgtatcac
accttacagtctgtcacactacagtgtgtatcacatcttactgtctgttg
cactacagtgtgtattgaacctatcatgtatgcatgcatgcatacatata
catatatacatatatacatatatacacatatacatatattcaccaaatgt
ctggcttcccacatggttgcactgaacccttggagtcctttactctggga
ggtttatgttgataactgggtagatcacggaggagaaactaccttgtatg
cagtgcatgctgtccataaacgcttccctcagcctgtgcgcccgtaacaa
atggtatttccccatttgtatatctggggcaatacaatagattcaatttc
cagatatatatgagggtaacagaataacacatatgagatcacaaccaatt
tctgctagaagtaatatttttatttttaaattagaattatacatatatat
tctgaattctaaaatggaaatcaaatctaagtatttaaaagaaaatatac
tatggagaataagtctattccataatt
tctctactgggagaactttgtctttttgtaaccaacccacttccctggtt
taaagggaaaatagagagaactctgttagcaaatatagaggtaggatgaa
aggaaagcacacctcagacatttcctgaaaacagttcacaagctgtgccc
tcatcgtggcatcagtcccatgcttcggtcacttagcagtcctagatagc
cagcccacaggcagcacactttcccatgtccttgttagcattggctcaga
ccctgtgcagatgtagacaaaaggcaagaaaagcaattcattgcacaggt
acattctctcagagaagtgtcataaaggagaatgtgggatgaccaagctg
cataattcctcctcctccttcccctcctcctcctcctctacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21767971_21769061
seq2: B6Ng01-101H11.b_45_1121

seq1  GAATTCCCTCAAAGTCAATTTTCTGGAGAAGAAACTAAGAGCTGATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAAAGTCAATTTTCTGGAGAAGAAACTAAGAGCTGATATCT  50

seq1  AACCAAAACACCCTTTATTTATCTCCTGGAGTCTTGTTCAGCCATTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACACCCTTTATTTATCTCCTGGAGTCTTGTTCAGCCATTATTC  100

seq1  CAGTTATATCCCGTCCAGCCTGAGTTAGGAGGGATTATGTGCATGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATATCCCGTCCAGCCTGAGTTAGGAGGGATTATGTGCATGACCCT  150

seq1  AGTGTAAATCCCAGGGCATCCCACAGCTGTGGCGGTTAGGATGCAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAATCCCAGGGCATCCCACAGCTGTGGCGGTTAGGATGCAGGCCT  200

seq1  CCTGTCTTACTAGCCTGACTGTGTATGTCCTGTTCCTTATGAGGCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTACTAGCCTGACTGTGTATGTCCTGTTCCTTATGAGGCACAAG  250

seq1  ACTAATCCACAGCGGGCACAGAAAAAGATCACATTGGCTCAGCCAACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCACAGCGGGCACAGAAAAAGATCACATTGGCTCAGCCAACTAC  300

seq1  TCCCACACCTTGTGTGCTTCACACTTAAATGAGAGCTCCTCCAGCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACCTTGTGTGCTTCACACTTAAATGAGAGCTCCTCCAGCTGCCT  350

seq1  TTTCCCCAACTGCTGATCAACACTTCAGAAGAAAGGCTGGGAAGCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAACTGCTGATCAACACTTCAGAAGAAAGGCTGGGAAGCTCCTG  400

seq1  CATCCAGCTCTGAACAAACGCTCCATCTGTCAGGTCCTCAAGATATGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCTCTGAACAAACGCTCCATCTGTCAGGTCCTCAAGATATGGAC  450

seq1  TTTACTGTCTGCCGCACTGTAGTGTGTATCACACCTTACTGTCTGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCTGCCGCACTGTAGTGTGTATCACACCTTACTGTCTGTCACA  500

seq1  CTACAGTGTGTATCACACCTTGCTGCCTGTCACACTACAGTGTGTATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGTGTATCACACCTTGCTGCCTGTCACACTACAGTGTGTATCAC  550

seq1  ACCTTACAGTCTGTCACACTACAGTGTGTATCACATCTTACTGTCTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAGTCTGTCACACTACAGTGTGTATCACATCTTACTGTCTGTTG  600

seq1  CACTACAGTGTGTATTGAACCTATCATGTATGCATGCATGCATACATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGTGTGTATTGAACCTATCATGTATGCATGCATGCATACATATA  650

seq1  CATATATACATATATACATATATACACATATACATATATTCACCAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACATATATACATATATACACATATACATATATTCACCAAATGT  700

seq1  CTGGCTTCCCACATGGTTGCACTGAACCCTTGGAGTCCTTTACTCTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCCACATGGTTGCACTGAACCCTTGGAGTCCTTTACTCTGGGA  750

seq1  GGTTTATGTTGATAACTGGGTAGATCACGGAGGAGAAACTACCTTGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGTTGATAACTGGGTAGATCACGGAGGAGAAACTACCTTGTATG  800

seq1  CAGTGCATGCTGTCCATAAACGCTTTCCCTCAGCCTGTGCGCCCGTAACA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTGCATGCTGTCCATAAACGC-TTCCCTCAGCCTGTGCGCCCGTAACA  849

seq1  AATGGTATTTCCCCATTTGTATATCTGGGGCAATACAATAGATTCAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATTTCCCCATTTGTATATCTGGGGCAATACAATAGATTCAATTT  899

seq1  CCAGATATATATGAGGGTAACAGAATAACACATATGAGATCACAACCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATATATGAGGGTAACAGAATAACACATATGAGATCACAACCAAT  949

seq1  TTCTGCTAGAGTTATTATTTTTATTTTTAAATTAAGAATTATACATATAT  1000
      ||||||||||  || |||||||||||||||||| ||||||||||||||||
seq2  TTCTGCTAGAAGTAATATTTTTATTTTTAAATT-AGAATTATACATATAT  998

seq1  ATTCTGAATTCTAAAAAATGGAAATCACAATCTTAAAGTATTTAAAAAGA  1050
      ||||||||||||  ||||||||||||| |||||  |||||||| ||||||
seq2  ATTCTGAATTCT--AAAATGGAAATCA-AATCT--AAGTATTT-AAAAGA  1042

seq1  AAAAATTATAACTATGGAGAATAAAGTCCTATTCCATAATT  1091
      ||| ||    |||||||||||| |||| |||||||||||||
seq2  AAATAT----ACTATGGAGAAT-AAGT-CTATTCCATAATT  1077

seq1: chr5_21920578_21920976
seq2: B6Ng01-101H11.g_69_467 (reverse)

seq1  AGGAAGAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAATTATGCAGCTTG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAATTATGCAGCTTG  50

seq1  GTCATCCCACATTCTCCTTTATGACACTTCTCTGAGAGAATGTACCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCCACATTCTCCTTTATGACACTTCTCTGAGAGAATGTACCTGTG  100

seq1  CAATGAATTGCTTTTCTTGCCTTTTGTCTACATCTGCACAGGGTCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATTGCTTTTCTTGCCTTTTGTCTACATCTGCACAGGGTCTGAGC  150

seq1  CAATGCTAACAAGGACATGGGAAAGTGTGCTGCCTGTGGGCTGGCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAACAAGGACATGGGAAAGTGTGCTGCCTGTGGGCTGGCTATCT  200

seq1  AGGACTGCTAAGTGACCGAAGCATGGGACTGATGCCACGATGAGGGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTAAGTGACCGAAGCATGGGACTGATGCCACGATGAGGGCACA  250

seq1  GCTTGTGAACTGTTTTCAGGAAATGTCTGAGGTGTGCTTTCCTTTCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAACTGTTTTCAGGAAATGTCTGAGGTGTGCTTTCCTTTCATCC  300

seq1  TACCTCTATATTTGCTAACAGAGTTCTCTCTATTTTCCCTTTAAACCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTATATTTGCTAACAGAGTTCTCTCTATTTTCCCTTTAAACCAGG  350

seq1  GAAGTGGGTTGGTTACAAAAAGACAAAGTTCTCCCAGTAGAGAGAATTC  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGTTGGTTACAAAAAGACAAAGTTCTCCCAGTAGAGAGAATTC  399