BAC Information

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BAC

Clone NameB6Ng01-101P10
Chromosome5 (Build37)
Map Location 58,357,866 - 58,478,365
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P10.bB6Ng01-101P10.g
ACCDH910991DH910992
length1,0991,101
definitionDH910991|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P10, 5' end.DH910992|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,357,866 - 58,358,973)(58,477,254 - 58,478,365)
sequence
gaattcttcttcagaatgatgtgatttctgcctgaccctttctttagaga
gtattaaggtttcatatagaccagggctctttattagactggacagcttt
ctagcacttactcctaggaatcaggttctctgatcaacttggattctatt
tattcaattactattgtcattaaatgttttaagggccttagagatggccc
agcaatcaagtgcatgtttttattgcagaggactcccgttcacttcccag
cacacacatggctgctcataactctgaataagtccatttccaggggatct
aatatcctcttctgacctctgcaggcaactcgatcgcatgtagtgcatag
accttcaggcaaaacactcattcacaaaaataatataaatgaaaatgtat
ttttaagaagtacaattactactttctgtgtatgttattttgaacttaag
tacctttgtcagtttccatggtagaaggcactgtgtatgactggtgttag
aatgcataggtctttacatccacctcaacctctccagctgattttttcct
tccttccatattctgaaattccttgatggctttttaaaaatatcgtagtg
aactgataattatagatatggccaaaacagtagttggggtgttccccaac
agatgtacttcctcggaattctgggaatgaagttgtagtaagtggttatg
agactgaaacagctatcataacatctgggagttaatgaatgcttctgtct
cattctcgatgtgtttgctgctttactattaaggatgtcaataacaaaat
acttccaagccttataggctacgtgtgaatagctgctgaaaattatctac
cttttttgataaataatataatcttggcatttattgatgttaaaaaaaaa
caaaaaacatttcctcagtctgtcaggtctgattcctttccagaattgct
agtttcttaacttggcttggtttcttgaacacttgacctggaaaagattt
ccctttcccagtcttactttcttcatcatagtaagaagtactatttacta
agtgggttctcttcactgactttattaagatattttaaggtgaggatgt
gaattctttccacatgcattaattcaagtactgcttgggacactagtaga
caagaatcatcactgttttagaatgtgacagttgaagagacgtccccaaa
cacagagatgaaaatgaacttgcagtgcatgtcttatgaaaacatgtcta
ccatgaatcgtacgcaaggatggaaggtaaaatatcacctacagatcaca
gttatcagctgaactcgtaggctaacatgaatgacctaactgacatacac
tagttcctttattatattgaattagcttattttgttaatttcatgctttc
tcacatatgatattacttagtttgttttgtcttatattgttatcctttaa
ataattagtaattataactttactatgctcacagtgacaacgagttagtt
ataggagagaacgaacatggcataccatagggtaataatgtgtatagtgg
agtctctttaaaaaatcttactgagttttaagttaaaagatttttcttca
actaatgtatgtatagcatgtaatattgtataacatacatggagagattt
tactctaacttgcagtatgatttctataccttccaaataaacctctaaca
gataaatgaagttcccctgttgctaaggaaattcaaagttctttttccac
ctagccacatcaagatggtcttggagggtatgtttttgatgagcacccag
aaacagaaagaagtctttaagtcattttctatagcaaggtctattgtgta
tcctatttaacaagatggattcaaaaatatatttcgccttttggctatca
cacagggcaagagggtagaaagctgtgctgtcattgattctccttaaaga
gtaatgaatgcatataatgaaaatgagtctcccagctattttttatttac
aacaaagcatttttacaggagatcaaataataccttgtggtctatgacaa
agaccatcctatctgttaaaatcaagtaatatctgtgcaaaataaaaata
caagtctctgggaagctgacatttctactgtacattatttttgtaggaag
atgcagagcaaacaataagagaagtgggcagtttgctcaggattaaacac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58357866_58358973
seq2: B6Ng01-101P10.b_48_1146

seq1  GAATTCTTCTTCAGAATGATGTGATTTCTGCCTGACCCTTTCTTTAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTCAGAATGATGTGATTTCTGCCTGACCCTTTCTTTAGAGA  50

seq1  GTATTAAGGTTTCATATAGACCAGGGCTCTTTATTAGACTGGACAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAGGTTTCATATAGACCAGGGCTCTTTATTAGACTGGACAGCTTT  100

seq1  CTAGCACTTACTCCTAGGAATCAGGTTCTCTGATCAACTTGGATTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTTACTCCTAGGAATCAGGTTCTCTGATCAACTTGGATTCTATT  150

seq1  TATTCAATTACTATTGTCATTAAATGTTTTAAGGGCCTTAGAGATGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATTACTATTGTCATTAAATGTTTTAAGGGCCTTAGAGATGGCCC  200

seq1  AGCAATCAAGTGCATGTTTTTATTGCAGAGGACTCCCGTTCACTTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCAAGTGCATGTTTTTATTGCAGAGGACTCCCGTTCACTTCCCAG  250

seq1  CACACACATGGCTGCTCATAACTCTGAATAAGTCCATTTCCAGGGGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGGCTGCTCATAACTCTGAATAAGTCCATTTCCAGGGGATCT  300

seq1  AATATCCTCTTCTGACCTCTGCAGGCAACTCGATCGCATGTAGTGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTCTTCTGACCTCTGCAGGCAACTCGATCGCATGTAGTGCATAG  350

seq1  ACCTTCAGGCAAAACACTCATTCACAAAAATAATATAAATGAAAATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGGCAAAACACTCATTCACAAAAATAATATAAATGAAAATGTAT  400

seq1  TTTTAAGAAGTACAATTACTACTTTCTGTGTATGTTATTTTGAACTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAAGTACAATTACTACTTTCTGTGTATGTTATTTTGAACTTAAG  450

seq1  TACCTTTGTCAGTTTCCATGGTAGAAGGCACTGTGTATGACTGGTGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGTCAGTTTCCATGGTAGAAGGCACTGTGTATGACTGGTGTTAG  500

seq1  AATGCATAGGTCTTTACATCCACCTCAACCTCTCCAGCTGATTTTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAGGTCTTTACATCCACCTCAACCTCTCCAGCTGATTTTTTCCT  550

seq1  TCCTTCCATATTCTGAAATTCCTTGATGGCTTTTTAAAAATATCGTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATATTCTGAAATTCCTTGATGGCTTTTTAAAAATATCGTAGTG  600

seq1  AACTGATAATTATAGATATGGCCAAAACAGTAGTTGGGGTGTTCCCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAATTATAGATATGGCCAAAACAGTAGTTGGGGTGTTCCCCAAC  650

seq1  AGATGTACTTCCTCGGAATTCTGGGAATGAAGTTGTAGTAAGTGGTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACTTCCTCGGAATTCTGGGAATGAAGTTGTAGTAAGTGGTTATG  700

seq1  AGACTGAAACAGCTATCATAACATCTGGGAGTTAATGAATGCTTCTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAACAGCTATCATAACATCTGGGAGTTAATGAATGCTTCTGTCT  750

seq1  CATTCTCGATGTGTTTGCTGCTTTACTATTAAGGATGTCAATAACAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCGATGTGTTTGCTGCTTTACTATTAAGGATGTCAATAACAAAAT  800

seq1  ACTTCCAAGCCTTATAGGCTACGTGTGAATAGCTGCTGAAAATTATCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAGCCTTATAGGCTACGTGTGAATAGCTGCTGAAAATTATCTAC  850

seq1  CTTTTTTGATAAATAATATAATCTTGGCATTTATTGATGTTAAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTTTTGATAAATAATATAATCTTGGCATTTATTGATGTT-AAAAAAAA  899

seq1  ACAAAAAACATTTCCTCAGTCTGTCAGGTCTGATTCCTTTCCAGAATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACATTTCCTCAGTCTGTCAGGTCTGATTCCTTTCCAGAATTGC  949

seq1  TAGTTTCTAAACTTGGCTTGGTTTCCTGAACACTTGACCTGGAAAAAGAT  1000
      |||||||| |||||||||||||||| |||||||||||||||| |||||||
seq2  TAGTTTCTTAACTTGGCTTGGTTTCTTGAACACTTGACCTGG-AAAAGAT  998

seq1  TTCCCTTTCCCAGTCTTTACTTTCTTCATCATAGTAAGAAATTAACTATT  1050
      ||||||||||||||| |||||||||||||||||||||||| |  ||||||
seq2  TTCCCTTTCCCAGTC-TTACTTTCTTCATCATAGTAAGAAGT--ACTATT  1045

seq1  TACTAAGT-GGTTCTCTACACTGACATTTTATTAAAGAATTATTTTAAAG  1099
      |||||||| |||||||| |||||||  |||||| ||||  |||||||| |
seq2  TACTAAGTGGGTTCTCTTCACTGAC--TTTATT-AAGA--TATTTTAAGG  1090

seq1  TGAGGATGT  1108
      |||||||||
seq2  TGAGGATGT  1099

seq1: chr5_58477254_58478365
seq2: B6Ng01-101P10.g_70_1170 (reverse)

seq1  TGTGTTTAATCCCTGATGCAAACTGGCCCACTTCTCTTATTGTTTGCTTC  50
      |||||||||| ||||| ||||||| |||||||||||||||||||||| ||
seq2  TGTGTTTAAT-CCTGA-GCAAACT-GCCCACTTCTCTTATTGTTTGC-TC  46

seq1  TGCATCTATCTAACAAAGAATAATGTACAGTAG-AATGTCAGCTTCCCAG  99
      ||||||| ||  ||||| ||||||||||||||| ||||||||||||||||
seq2  TGCATCT-TCCTACAAA-AATAATGTACAGTAGAAATGTCAGCTTCCCAG  94

seq1  AGACTTGTATTTTTATTTTGCACAGATATTACCTGATTTTTAAACAGATT  149
      |||||||||||||||||||||||||||||||| |||||||  |||||| |
seq2  AGACTTGTATTTTTATTTTGCACAGATATTACTTGATTTT--AACAGA-T  141

seq1  AGGATGGTCTTTGTCATAGACCACAAGGTATTATTTTGAATCTCCTGTAA  199
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  AGGATGGTCTTTGTCATAGACCACAAGGTATTATTT--GATCTCCTGTAA  189

seq1  AAATGCTTTGTTGTAAATAAAAAATAGCTGGGAGACTCATTTTCATTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTGTTGTAAATAAAAAATAGCTGGGAGACTCATTTTCATTATA  239

seq1  TGCATTTCATTACTCTTTAAGGAGAATCAATGACAGCACAGCTTTCTACC  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-TTCATTACTCTTTAAGGAGAATCAATGACAGCACAGCTTTCTACC  288

seq1  CTCTTGCCCTGTGTGATAGCCAAAAGGCGAAATATATTTTTGAATCCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCTGTGTGATAGCCAAAAGGCGAAATATATTTTTGAATCCATC  338

seq1  TTGTTAAATAGGATACACAATAGACCTTGCTATAGAAAATGACTTAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATAGGATACACAATAGACCTTGCTATAGAAAATGACTTAAAGA  388

seq1  CTTCTTTCTGTTTCTGGGTGCTCATCAAAAACATACCCTCCAAGACCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTGTTTCTGGGTGCTCATCAAAAACATACCCTCCAAGACCATC  438

seq1  TTGATGTGGCTAGGTGGAAAAAGAACTTTGAATTTCCTTAGCAACAGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGGCTAGGTGGAAAAAGAACTTTGAATTTCCTTAGCAACAGGGG  488

seq1  AACTTCATTTATCTGTTAGAGGTTTATTTGGAAGGTATAGAAATCATACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATTTATCTGTTAGAGGTTTATTTGGAAGGTATAGAAATCATACT  538

seq1  GCAAGTTAGAGTAAAATCTCTCCATGTATGTTATACAATATTACATGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTAGAGTAAAATCTCTCCATGTATGTTATACAATATTACATGCTA  588

seq1  TACATACATTAGTTGAAGAAAAATCTTTTAACTTAAAACTCAGTAAGATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATTAGTTGAAGAAAAATCTTTTAACTTAAAACTCAGTAAGATT  638

seq1  TTTTAAAGAGACTCCACTATACACATTATTACCCTATGGTATGCCATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAGACTCCACTATACACATTATTACCCTATGGTATGCCATGTT  688

seq1  CGTTCTCTCCTATAACTAACTCGTTGTCACTGTGAGCATAGTAAAGTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTCCTATAACTAACTCGTTGTCACTGTGAGCATAGTAAAGTTAT  738

seq1  AATTACTAATTATTTAAAGGATAACAATATAAGACAAAACAAACTAAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAATTATTTAAAGGATAACAATATAAGACAAAACAAACTAAGTA  788

seq1  ATATCATATGTGAGAAAGCATGAAATTAACAAAATAAGCTAATTCAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATATGTGAGAAAGCATGAAATTAACAAAATAAGCTAATTCAATAT  838

seq1  AATAAAGGAACTAGTGTATGTCAGTTAGGTCATTCATGTTAGCCTACGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGAACTAGTGTATGTCAGTTAGGTCATTCATGTTAGCCTACGAG  888

seq1  TTCAGCTGATAACTGTGATCTGTAGGTGATATTTTACCTTCCATCCTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGATAACTGTGATCTGTAGGTGATATTTTACCTTCCATCCTTGC  938

seq1  GTACGATTCATGGTAGACATGTTTTCATAAGACATGCACTGCAAGTTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGATTCATGGTAGACATGTTTTCATAAGACATGCACTGCAAGTTCAT  988

seq1  TTTCATCTCTGTGTTTGGGGACGTCTCTTCAACTGTCACATTCTAAAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCTGTGTTTGGGGACGTCTCTTCAACTGTCACATTCTAAAACA  1038

seq1  GTGATGATTCTTGTCTACTAGTGTCCCAAGCAGTACTTGAATTAATGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATTCTTGTCTACTAGTGTCCCAAGCAGTACTTGAATTAATGCAT  1088

seq1  GTGGAAAGAATTC  1112
      |||||||||||||
seq2  GTGGAAAGAATTC  1101