BAC Information

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BAC

Clone NameB6Ng01-102B06
Chromosome5 (Build37)
Map Location 148,073,832 - 148,246,516
singlet/doubletdoublet
Overlap genePdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Upstream geneCdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1
Downstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102B06.bB6Ng01-102B06.g
ACCDH911070DH911071
length1,1111,023
definitionDH911070|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B06, 5' end.DH911071|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,073,832 - 148,074,931)(148,245,492 - 148,246,516)
sequence
gaattctgtgtaactatggggccaggaggtggattactcagggcacgggg
agggggcggcggtgagaggcttctgtttacctttttgttacaatctgctg
ggaaggtaagaaaacagggctgattatctggattcgtggcaatctctgac
tccggcgttcagagacctagaggtttgaatgagatggtgttggcagaggc
taataaatgactctgcaaacgcagcagactggcgttgattgattgcattt
tacaatgaagcacatgtaaagagaaaagattcccccaccccacccccaac
cccaattgaactgtaggtccacagtatctctttcccaaggaaaccagagg
aaagttgggtctgagttcatgagtagaccggaataccgtggcagatgcgt
ggagaccctgcatgagatgtgaggagaccctgtgtgaaattctacaagga
ttgtaaatgtgaagtgaccaagtggatactagaagtgcagggtgcaaggg
acccggttgactgtgaactcagcaggagagacaggtttggtctgcaaccc
ttcagcttccatttcctctttaatgacagactcagaacacaatcatctct
ttagtggggggtgaaccgtctagttagacacctgcactgtggaagagaga
aacactttgccatgtttcatgagtcttgaactaaaagtatcaatatttgc
atgcaaagaaatttagagggctggagagatggctcagcacttaagatcac
tagcttctcttacagaggactcaggttcaggtcccagcaatcaaaagaag
agcacacaattggttttgtaactccagttccaggggatctgataccctct
cttgtcctttggagtttcctgcatacatgtgacccatacttgagttaata
cacacacacacacacacacacacacacacacacacacacacacacacgca
tgcacacacacacatgcatgcatgcacattaataagtaaatgattaagta
tttttagaagaaaaagaataagcctggaacttgtttccaatcaagctggg
gcccacactctgattgttttgccacatttccttttttgtttataaaagat
gtctgcctttc
gaattcatcattcacccgtacctgcctcagatgcagctctggactttgca
tgcatgcttaagctgataatggaagaagttaacagtcctgtgacgactga
gatggaaggaatgcactgggtgggcatagtgaggagagcatttgagagtt
cagaagtcaaatgcttccatttgaatatgacccccatccccaaagtccat
gagttagaaactaaatccctggtgtaacaggtgaaggggtggcctagtaa
aaggtggctctgcaggatgtggtgatgcaccccagcattcaggaggcaga
ggctgatggatctgtctacagagaagagtcccaggacagcctgctgagga
ggatacctctccacacaggccagtaccttcatgttggacttttcaacctc
caaaacagagatatgcttcctttccttgtggtttcctgtagcccagcaag
cccctaactcttatgtgacaaaggatgaccctgaactttctgaccctcct
gcctccatctaccaagtgctgggatacagggctgcaattcttccttcctt
ccttccctttttagatacatacgtacttattggggacgagtggcaataca
gttagtctgcgatcagaggacttacaggagttggttctttcctactaccg
tgtgggtcctgaggattgaactcaagttttagtttgacaaatgcctttac
cttcaaagccatcttgccagaccctgaaattcctgtttgtttgtttttta
ttaaattgttcaatctgtgtttttcggttatagcaacacaaaactggact
atgtttaacaggaacttcaattaaaagcttaaaaatatatacacatgaat
atacaattccacagaggccagatgggggaacataaaaatctattcaagta
gcagttccactatgatctcctgcccagttacattattattaagattcact
tgaagaatgctctatagcacatcaactaacaccaatccagatgtttctaa
atggcaaaatttggaatgtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148073832_148074931
seq2: B6Ng01-102B06.b_45_1155

seq1  GAATTCTGTGTAACTATGGGGCCAGGAGGTGGATTACTCAGGGCACGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTAACTATGGGGCCAGGAGGTGGATTACTCAGGGCACGGGG  50

seq1  AGGGGGCGGCGGTGAGAGGCTTCTGTTTACCTTTTTGTTACAATCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCGGCGGTGAGAGGCTTCTGTTTACCTTTTTGTTACAATCTGCTG  100

seq1  GGAAGGTAAGAAAACAGGGCTGATTATCTGGATTCGTGGCAATCTCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAAGAAAACAGGGCTGATTATCTGGATTCGTGGCAATCTCTGAC  150

seq1  TCCGGCGTTCAGAGACCTAGAGGTTTGAATGAGATGGTGTTGGCAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCGTTCAGAGACCTAGAGGTTTGAATGAGATGGTGTTGGCAGAGGC  200

seq1  TAATAAATGACTCTGCAAACGCAGCAGACTGGCGTTGATTGATTGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGACTCTGCAAACGCAGCAGACTGGCGTTGATTGATTGCATTT  250

seq1  TACAATGAAGCACATGTAAAGAGAAAAGATTCCCCCACCCCACCCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAAGCACATGTAAAGAGAAAAGATTCCCCCACCCCACCCCCAAC  300

seq1  CCCAATTGAACTGTAGGTCCACAGTATCTCTTTCCCAAGGAAACCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGAACTGTAGGTCCACAGTATCTCTTTCCCAAGGAAACCAGAGG  350

seq1  AAAGTTGGGTCTGAGTTCATGAGTAGACCGGAATACCGTGGCAGATGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGTCTGAGTTCATGAGTAGACCGGAATACCGTGGCAGATGCGT  400

seq1  GGAGACCCTGCATGAGATGTGAGGAGACCCTGTGTGAAATTCTACAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCTGCATGAGATGTGAGGAGACCCTGTGTGAAATTCTACAAGGA  450

seq1  TTGTAAATGTGAAGTGACCAAGTGGATACTAGAAGTGCAGGGTGCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGTGAAGTGACCAAGTGGATACTAGAAGTGCAGGGTGCAAGGG  500

seq1  ACCCGGTTGACTGTGAACTCAGCAGGAGAGACAGGTTTGGTCTGCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGTTGACTGTGAACTCAGCAGGAGAGACAGGTTTGGTCTGCAACCC  550

seq1  TTCAGCTTCCATTTCCTCTTTAATGACAGACTCAGAACACAATCATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCCATTTCCTCTTTAATGACAGACTCAGAACACAATCATCTCT  600

seq1  TTAGTGGGGGGTGAACCGTCTAGTTAGACACCTGCACTGTGGAAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGGGGGTGAACCGTCTAGTTAGACACCTGCACTGTGGAAGAGAGA  650

seq1  AACACTTTGCCATGTTTCATGAGTCTTGAACTAAAAGTATCAATATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTGCCATGTTTCATGAGTCTTGAACTAAAAGTATCAATATTTGC  700

seq1  ATGCAAAGAAATTTAGAGGGCTGGAGAGATGGCTCAGCACTTAAGATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGAAATTTAGAGGGCTGGAGAGATGGCTCAGCACTTAAGATCAC  750

seq1  TAGCTTCTCTTACAGAGGACTCAGGTTCAGGTCCCAGCAATCAAAAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTCTTACAGAGGACTCAGGTTCAGGTCCCAGCAATCAAAAGAAG  800

seq1  AGCACACAATTGG-TTTGTAACTCCAGTTCCAGGGGATCTGATACCCTCT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCACACAATTGGTTTTGTAACTCCAGTTCCAGGGGATCTGATACCCTCT  850

seq1  CTTGTCCTTTGGAGTTTCCTGCATACATGTGACCCATACTTGAGTTAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTTGGAGTTTCCTGCATACATGTGACCCATACTTGAGTTAATA  900

seq1  CACACACACACACACACACACACACACACACACACACACACACACACGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACGCA  950

seq1  TGCACACACACACATGCATGCATGCACATTAAATAAGTAAATGAATAAGT  999
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TGCACACACACACATGCATGCATGCACATT-AATAAGTAAATGATTAAGT  999

seq1  ATTTTTAGAAGAAATAG-ATAAGCCTGG-ACT--GTTCCAATCAAGCTGG  1045
      |||||||||||||| || |||||||||| |||   |||||||||||||||
seq2  ATTTTTAGAAGAAAAAGAATAAGCCTGGAACTTGTTTCCAATCAAGCTGG  1049

seq1  GG-CCACACTCTGA-TGTTTTG-CACATTTC--TTTTTG-GTATTAAAGA  1089
      || ||||||||||| ||||||| ||||||||  ||||||  ||| |||||
seq2  GGCCCACACTCTGATTGTTTTGCCACATTTCCTTTTTTGTTTATAAAAGA  1099

seq1  TGTCTG-CTTTC  1100
      |||||| |||||
seq2  TGTCTGCCTTTC  1111

seq1: chr5_148245492_148246516
seq2: B6Ng01-102B06.g_68_1090 (reverse)

seq1  TGACACATTCCAAATATTGCCATTTAGAAACATCTGGATT-GTGTTAGTT  49
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TGACACATTCCAAATTTTGCCATTTAGAAACATCTGGATTGGTGTTAGTT  50

seq1  GATGTGCTATTAGAGCATTCTTCAAGTGAATCTTTAATAATAATGTAACT  99
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GATGTGCTA-TAGAGCATTCTTCAAGTGAATC-TTAATAATAATGTAACT  98

seq1  GGGCAGGAGATCATAGTGGAACTGCTACTTG-ATAGATTTTTATGTTCCC  148
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGCAGGAGATCATAGTGGAACTGCTACTTGAATAGATTTTTATGTTCCC  148

seq1  CCATCTGGCCTCTGTGGAATTGTATATTCATGTGTATATATTTTTAAGCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGCCTCTGTGGAATTGTATATTCATGTGTATATATTTTTAAGCT  198

seq1  TTTAATTGAAGTTCCTGTTTAAACATAGTCCAGTTTTGTGTTGCTATAAC  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTAATTGAAGTTCCTG-TTAAACATAGTCCAGTTTTGTGTTGCTATAAC  247

seq1  CGAAAAACACAGATTGAACAATTTAATAAAAAAACAAACAAACAGGAATT  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGAAAAACACAGATTGAACAATTTAAT-AAAAAACAAACAAACAGGAATT  296

seq1  TCAGGGTCTGGCAAGATGGCTTTGAAGGTAAAGGCATTTGTCAAACTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCTGGCAAGATGGCTTTGAAGGTAAAGGCATTTGTCAAACTAAA  346

seq1  ACTTGAGTTCAATCCTCAGGACCCACACGGTAGTAGGAAAGAACCAACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTTCAATCCTCAGGACCCACACGGTAGTAGGAAAGAACCAACTC  396

seq1  CTGTAAGTCCTCTGATCGCAGACTAACTGTATTGCCACTCGTCCCCAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTCCTCTGATCGCAGACTAACTGTATTGCCACTCGTCCCCAATA  446

seq1  AGTACGTATGTATCTAAAAAGGGAAGGAAGGAAGGAAGAATTGCAGCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGTATGTATCTAAAAAGGGAAGGAAGGAAGGAAGAATTGCAGCCCT  496

seq1  GTATCCCAGCACTTGGTAGATGGAGGCAGGAGGGTCAGAAAGTTCAGGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCAGCACTTGGTAGATGGAGGCAGGAGGGTCAGAAAGTTCAGGGT  546

seq1  CATCCTTTGTCACATAAGAGTTAGGGGCTTGCTGGGCTACAGGAAACCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTGTCACATAAGAGTTAGGGGCTTGCTGGGCTACAGGAAACCAC  596

seq1  AAGGAAAGGAAGCATATCTCTGTTTTGGAGGTTGAAAAGTCCAACATGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAGCATATCTCTGTTTTGGAGGTTGAAAAGTCCAACATGAA  646

seq1  GGTACTGGCCTGTGTGGAGAGGTATCCTCCTCAGCAGGCTGTCCTGGGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGCCTGTGTGGAGAGGTATCCTCCTCAGCAGGCTGTCCTGGGAC  696

seq1  TCTTCTCTGTAGACAGATCCATCAGCCTCTGCCTCCTGAATGCTGGGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGTAGACAGATCCATCAGCCTCTGCCTCCTGAATGCTGGGGTG  746

seq1  CATCACCACATCCTGCAGAGCCACCTTTTACTAGGCCACCCCTTCACCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCACATCCTGCAGAGCCACCTTTTACTAGGCCACCCCTTCACCTG  796

seq1  TTACACCAGGGATTTAGTTTCTAACTCATGGACTTTGGGGATGGGGGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAGGGATTTAGTTTCTAACTCATGGACTTTGGGGATGGGGGTCA  846

seq1  TATTCAAATGGAAGCATTTGACTTCTGAACTCTCAAATGCTCTCCTCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATGGAAGCATTTGACTTCTGAACTCTCAAATGCTCTCCTCACT  896

seq1  ATGCCCACCCAGTGCATTCCTTCCATCTCAGTCGTCACAGGACTGTTAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACCCAGTGCATTCCTTCCATCTCAGTCGTCACAGGACTGTTAAC  946

seq1  TTCTTCCATTATCAGCTTAAGCATGCATGCAAAGTCCAGAGCTGCATCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATTATCAGCTTAAGCATGCATGCAAAGTCCAGAGCTGCATCTG  996

seq1  AGGCAGGTACGGGTGAATGATGAATTC  1025
      |||||||||||||||||||||||||||
seq2  AGGCAGGTACGGGTGAATGATGAATTC  1023