BAC Information

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BAC

Clone NameB6Ng01-102F20
Chromosome5 (Build37)
Map Location 97,386,527 - 97,514,778
singlet/doubletdoublet
Overlap geneLOC670358, Bmp2k, Paqr3
Upstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F20.bB6Ng01-102F20.g
ACCDH911278DH911279
length1,0841,185
definitionDH911278|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F20, 5' end.DH911279|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,386,527 - 97,387,622)(97,513,590 - 97,514,778)
sequence
gaattcactccgtaggtcagcctggccttgagctcataagatcttcctga
ctctgcctcttgagtgctgggattagaggtacgagttttccatgcctagc
tagcaggcagtttattttagaaagtctcaacaaatgctgacgtttgtttg
tttgctttttttgttcttgttgttctatttggttttaaaattgcatttat
ttatttgaggagaggtgagatacatgccatgtcacatgtagaagtcagag
acaactgtgggggttgggctctgccagttcaccaagttctccaagagcac
acttaggtcataaagcttggcagcaagcgccttcagccacagagccatcc
aggtggccactgggatcgttttttttttttttttttttttaatgttatta
agtaacgtttaggtgcacttaaaaattatttaaaaatttaaaataaacag
tttaaaaagttttttttctctttttgttgttgttgctttgggttttgttg
tgttgctgctgctgctgctgctgttgctgctgttgctactgcagttgttg
ttgttgctattgctattattgttgctgttgttgttgctgatgctattgtt
gttgctgttgctattatggttgctgttgtttttgttgttgctgttgctgt
ttttgttgctgttgttgctgttgctgtttggttcaatattgcaaaatgaa
ctcaaagttttgtccatgataggtaagaaatcaaccactgagctatattt
ctagttcttgagttttaaaacacatgtatttttaaggaatcaaatggtag
atgaaaaccatattttcttttgttttctaaaaacaaaaaacaaaaaacaa
aaaacagaaattgaccattaggttgaaaattggccattatggccgttcta
ccacacaggtggtattttagtggtataactacatataatatttcttagga
aatagtgggtttttttgttctctgatcatatattaatcttatatcatgta
gagtgtgatgataatttctgtcatgggctaacaggatagcacagactgaa
tttggtgaaccaccgatgccatctaacctgtccc
gaattcctaagggtatcagcccccttttaggatatcttcatcaccaggtc
ctctagattactgcacctctagctacacagatcctccagccagcagacat
caagaccatctcctcctgcgcattcattcatccattcattcactcccttc
tgtacccctcacaacggaactcggaacctccattatatggctagctacct
atcagaaatcttttattggccctgagacgttccaccctgtgtgtggtgta
ctgtcctgtcttgccttcagctacaactctgatgtcttctatggtactac
ctattacacgcatagctgaattctttctatgacagctcgggaactgagta
gcaacccaggtccttcaaactcgctatcagaatgaggaacccagcagaca
tgagggaatcaatgatgccatgctggcctaacatctctgctgctctgtag
catcacatcttacaactcacctgatggacccagcccacaggacagacctc
caagactacccctggacgatgccctgcacacgtggtacttgatgaactgg
tagaatccttgactgcaggcctgctccagtgttgtggctggccaaccatc
cctacttatcatatctcatcgtccttactctctgtttcctagctctgtgc
acatgtgtaaccaaaatgactgctccaagagtggcaactggtatatatag
aaagggatatcatgacaattcagacactatagggaggtacttttagctca
gaattcagtcactttgcattttcttactacctttaacaaacaaatgtctg
ttttcaggagtttgcactcagtgtcagtactcaaaacatttccaatgtgc
tggaaaactcacaggagggaaaatgggtgcataaatccaagcctacacct
ccagcagtcagtaaagacctccttaaggagaaggcaggattgaaccatga
gaaagagccgtacaaaggacaagcttctagctgcttcagatgaaaagctc
tgggaccttgagaatagtgaaactgggataatgtggctgaacatgtcaga
agggggctgggccgctacactgccccagaaccatgtgaaaggcctacacc
gttccacacggcttgtagcctcaatgctctggaaaacaagaatatcctgt
gctcccttggcaagccagctagcactatggaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97386527_97387622
seq2: B6Ng01-102F20.b_44_1127

seq1  GAATTCACTCCGTAGGTCAGCCTGGCCTTGAGCTCATAAGATCTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCGTAGGTCAGCCTGGCCTTGAGCTCATAAGATCTTCCTGA  50

seq1  CTCTGCCTCTTGAGTGCTGGGATTAGAGGTACGAGTTTTCCATGCCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTTGAGTGCTGGGATTAGAGGTACGAGTTTTCCATGCCTAGC  100

seq1  TAGCAGGCAGTTTATTTTAGAAAGTCTCAACAAATGCTGACGTTTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCAGTTTATTTTAGAAAGTCTCAACAAATGCTGACGTTTGTTTG  150

seq1  TTTGCTTTTTTTGTTCTTGTTGTTCTATTTGGTTTTAAAATTGCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTTTGTTCTTGTTGTTCTATTTGGTTTTAAAATTGCATTTAT  200

seq1  TTATTTGAGGAGAGGTGAGATACATGCCATGTCACATGTAGAAGTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGGAGAGGTGAGATACATGCCATGTCACATGTAGAAGTCAGAG  250

seq1  ACAACTGTGGGGGTTGGGCTCTGCCAGTTCACCAAGTTCTCCAAGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGGGGGTTGGGCTCTGCCAGTTCACCAAGTTCTCCAAGAGCAC  300

seq1  ACTTAGGTCATAAAGCTTGGCAGCAAGCGCCTTCAGCCACAGAGCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTCATAAAGCTTGGCAGCAAGCGCCTTCAGCCACAGAGCCATCC  350

seq1  AGGTGGCCACTGGGATCGTTTTTTTTTTTTTTTTTTTTTTAATGTTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCACTGGGATCGTTTTTTTTTTTTTTTTTTTTTTAATGTTATTA  400

seq1  AGTAACGTTTAGGTGCACTTAAAAATTATTTAAAAATTTAAAATAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACGTTTAGGTGCACTTAAAAATTATTTAAAAATTTAAAATAAACAG  450

seq1  TTTAAAAAGTTTTTTTTCTCTTTTTGTTGTTGTTGCTTTGGGTTTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTTTTTTTTCTCTTTTTGTTGTTGTTGCTTTGGGTTTTGTTG  500

seq1  TGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTACTGCAGTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTACTGCAGTTGTTG  550

seq1  TTGTTGCTATTGCTATTATTGTTGCTGTTGTTGTTGCTGATGCTATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTATTGCTATTATTGTTGCTGTTGTTGTTGCTGATGCTATTGTT  600

seq1  GTTGCTGTTGCTATTATGGTTGCTGTTGTTTTTGTTGTTGCTGTTGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTGCTATTATGGTTGCTGTTGTTTTTGTTGTTGCTGTTGCTGT  650

seq1  TTTTGTTGCTGTTGTTGCTGTTGCTGTTTGGTTCAATATTGCAAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCTGTTGTTGCTGTTGCTGTTTGGTTCAATATTGCAAAATGAA  700

seq1  CTCAAAGTTTTGTCCATGATAGGTAAGAAATCAACCACTGAGCTATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTTTTGTCCATGATAGGTAAGAAATCAACCACTGAGCTATATTT  750

seq1  CTAGTTCTTGAGTTTTAAAACACATGTATTTTTAAGGAATCAAATGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTGAGTTTTAAAACACATGTATTTTTAAGGAATCAAATGGTAG  800

seq1  ATGAAAACCATATTTTCTTTTGTTTTCTAAAAACAAAAAACAAAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCATATTTTCTTTTGTTTTCTAAAAACAAAAAACAAAAAACAA  850

seq1  AAAACAGAAATTGACCATTAGGTTGAAAATTGGCCATTATGGCCGTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAATTGACCATTAGGTTGAAAATTGGCCATTATGGCCGTTCTA  900

seq1  CCACACAGGTGTATTTTTTTAGTGGTATAACTACATATTAATATTTCTTA  950
      |||||||||||   | ||||||||||||||||||||| ||||||||||||
seq2  CCACACAGGTG--GTATTTTAGTGGTATAACTACATA-TAATATTTCTTA  947

seq1  GGAAATAGTGGTTTTTTTTGTTCTCTGATCATATATTTAATCTTTATATC  1000
      ||||||||||| ||||||||||||||||||||||| |||||| |||||||
seq2  GGAAATAGTGGGTTTTTTTGTTCTCTGATCATATA-TTAATC-TTATATC  995

seq1  ATGTAGTAGTGTGATGATTAATTTCTGTTCATGGGCTAACAGGATTATGC  1050
      |||||| |||||||||| ||||||||| |||||||||||||||   ||  
seq2  ATGTAG-AGTGTGATGA-TAATTTCTG-TCATGGGCTAACAGG---ATAG  1039

seq1  CACAGACTGAATTTGGTGAACCACCGATGCCATCTAAACCTGTCCC  1096
      ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACAGACTGAATTTGGTGAACCACCGATGCCATCT-AACCTGTCCC  1084

seq1: chr5_97513590_97514778
seq2: B6Ng01-102F20.g_65_1249 (reverse)

seq1  AACTTCCATAGTTGGCTAGACTGGCTTGCC-AGGGAGCACCAGGGGATAT  49
      ||||||||||||  ||||| |||||||||| |||||||||    ||||||
seq2  AACTTCCATAGT--GCTAG-CTGGCTTGCCAAGGGAGCAC---AGGATAT  44

seq1  TCCTTGTTTTCC-CAGCACTGAGGCTACAAAGCCCGTGT-GAAC-GTGTA  96
      | ||||||||||  |||| |||||||||||   |||||| |||| |||||
seq2  T-CTTGTTTTCCAGAGCATTGAGGCTACAA--GCCGTGTGGAACGGTGTA  91

seq1  -GCCTTTCACATGGGTTCT-GAGCAGTGTAGCGGCCCAGCCCCCTCCTGA  144
       ||||||||||| |||||| | ||||||||||||||||||||||| ||||
seq2  GGCCTTTCACAT-GGTTCTGGGGCAGTGTAGCGGCCCAGCCCCCTTCTGA  140

seq1  CCATGTTCCAGCCACATTATCCCAGTTTCACTA-TCTCAAGGTCCCAGAG  193
       |||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  -CATGTT-CAGCCACATTATCCCAGTTTCACTATTCTCAAGGTCCCAGAG  188

seq1  CTTTTCATCTGAAGCAGCTAGAAGCTTGTCCTTTGTACGGCTCTTTCTCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATCTGAAGCAGCTAGAAGCTTGTCCTTTGTACGGCTCTTTCTCA  238

seq1  TGGTTCAATCCTGCCTTCTCCTTAAGGAGGTCTTTACTGACTGCTGGAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAATCCTGCCTTCTCCTTAAGGAGGTCTTTACTGACTGCTGGAGG  288

seq1  TGTAGGCTTGGATTTATGCACCCATTTTCCCTCCTGTGAGTTTTCCAGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTTGGATTTATGCACCCATTTTCCCTCCTGTGAGTTTTCCAGCA  338

seq1  CATTGGAAATGTTTTGAGTACTGACACTGAGTGCAAACTCCTGAAAACAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAATGTTTTGAGTACTGACACTGAGTGCAAACTCCTGAAAACAG  388

seq1  ACATTTGTTTGTTAAAGGTAGTAAGAAAATGC-AAGTGACTGAATTCTGA  442
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACATTTGTTTGTTAAAGGTAGTAAGAAAATGCAAAGTGACTGAATTCTGA  438

seq1  GCTAAAAGTACCTCCCTATAGTGTCTGAATTGTCATGATATCCCTTTCTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGTACCTCCCTATAGTGTCTGAATTGTCATGATATCCCTTTCTA  488

seq1  TATATACCAGTTGCCACTCTTGGAGCAGTCATTTTGGTTACACATGTGCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCAGTTGCCACTCTTGGAGCAGTCATTTTGGTTACACATGTGCA  538

seq1  CAGAGCTAGGAAACAGAGAGTAAGGACGATGAGATATGATAAGTAGGGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGGAAACAGAGAGTAAGGACGATGAGATATGATAAGTAGGGAT  588

seq1  GGTTGGCCAGCCACAACACTGGAGCAGGCCTGCAGTCAAGGATTCTACCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCAGCCACAACACTGGAGCAGGCCTGCAGTCAAGGATTCTACCA  638

seq1  GTTCATCAAGTACCACGTGTGCAGGGCATCGTCCAGGGGTAGTCTTGGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAAGTACCACGTGTGCAGGGCATCGTCCAGGGGTAGTCTTGGAG  688

seq1  GTCTGTCCTGTGGGCTGGGTCCATCAGGTGAGTTGTAAGATGTGATGCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCTGTGGGCTGGGTCCATCAGGTGAGTTGTAAGATGTGATGCTA  738

seq1  CAGAGCAGCAGAGATGTTAGGCCAGCATGGCATCATTGATTCCCTCATGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCAGAGATGTTAGGCCAGCATGGCATCATTGATTCCCTCATGT  788

seq1  CTGCTGGGTTCCTCATTCTGATAGCGAGTTTGAAGGACCTGGGTTGCTAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGTTCCTCATTCTGATAGCGAGTTTGAAGGACCTGGGTTGCTAC  838

seq1  TCAGTTCCCGAGCTGTCATAGAAAGAATTCAGCTATGCGTGTAATAGGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCCGAGCTGTCATAGAAAGAATTCAGCTATGCGTGTAATAGGTA  888

seq1  GTACCATAGAAGACATCAGAGTTGTAGCTGAAGGCAAGACAGGACAGTAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATAGAAGACATCAGAGTTGTAGCTGAAGGCAAGACAGGACAGTAC  938

seq1  ACCACACACAGGGTGGAACGTCTCAGGGCCAATAAAAGATTTCTGATAGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACAGGGTGGAACGTCTCAGGGCCAATAAAAGATTTCTGATAGG  988

seq1  TAGCTAGCCATATAATGGAGGTTCCGAGTTCCGTTGTGAGGGGTACAGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCCATATAATGGAGGTTCCGAGTTCCGTTGTGAGGGGTACAGAA  1038

seq1  GGGAGTGAATGAATGGATGAATGAATGCGCAGGAGGAGATGGTCTTGATG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAATGAATGGATGAATGAATGCGCAGGAGGAGATGGTCTTGATG  1088

seq1  TCTGCTGGCTGGAGGATCTGTGTAGCTAGAGGTGCAGTAATCTAGAGGAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGCTGGAGGATCTGTGTAGCTAGAGGTGCAGTAATCTAGAGGAC  1138

seq1  CTGGTGATGAAGATATCCTAAAAGGGGGCTGATACCCTTAGGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATGAAGATATCCTAAAAGGGGGCTGATACCCTTAGGAATTC  1185