BAC Information

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BAC

Clone NameB6Ng01-102F21
Chromosome5 (Build37)
Map Location 113,785,597 - 113,931,086
singlet/doubletdoublet
Overlap geneAym1
Upstream geneHps4, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2
Downstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F21.bB6Ng01-102F21.g
ACCDH911280DH911281
length1,146572
definitionDH911280|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F21, 5' end.DH911281|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,929,938 - 113,931,086)(113,785,597 - 113,786,174)
sequence
gaattcagatggagactgaacacagagctaggaccacaaggggcagtgag
cctcaggtaggtgatttccacatgctagaaaagaaggggaattgaaccca
gctttggaggttctaggaggacgacagcctccttcctggcttgctgatat
gtttgggctggagagtatgagactcagtctgtactgcataagcttgtcac
tttggtcacttgttacaaagttacaggaaaaccatgctggtataaagtag
gaggaacccttgtcttggaaagcccagattctagcaccggccctgtcatc
aacgctgcaaaaccacaggcaagccccagggtgccctagagcctgggaaa
gataggactgagtggccactcttgtgagccccggaggccctctgcccggc
ccccttccactgctttgcttaagttcaaactcaaagacagcatggccctg
acaagcagagcctgcatgtgggtactgagggctggccaggcacactcagg
gaaggggtcagttgaataactcccagggcattcagggagaagctacagcc
tagccttgagtcaagtcccccaaagtagggacaggcagtgctgacatgaa
aaacagggagggagaagaataaaagccagcccctctcagcctctgggggt
agatgactggaagagtcccttaaaccaggggtctccagttcctccctctc
ctgtctgtgcagggacgcagtgacagggcacacttcctgagctccacgga
tacaacaggagctctgctctcaatgctgctgagctctcgcccgcccggcc
ttttggtgtagatttgatgcgcatcacctcgggttttacaaaagaggaaa
gagaggcacagagtagctctgtcatggtcactgataaggcaatagagtgc
tggagattggtcctagtactttcaattgagttcaatcgggaatctgcctg
tccagatgctgaagtcattgtcccaaattgggttttgatcgatccataaa
gatgccaatggccgggcacgggtgggacccttagagtgctcgagcagaca
cagagaggaatgcagattgcaagtcttggggaaaaaaggttggatggagg
aacggcagaagaataagttaaccagccaattgtgaagtcccgatct
agcagggatgcagagaggaacccagggtgctgggtcgtggaatggtatct
agaaaacacactaaccaaccacccatgcaatgtcactgggtccttgagat
gtcctgcaagctggagcaggggcagctctgggattgcagccggctaaggg
aagccagggggcggggtctgtaaggatgctgggggcagctatcgcttttt
acaggtcttttataccctagagcctgggcaggccataaggacaaagggtg
cccgggacacaagcaggtagtttggaagtttggtgtaaatttagaagcaa
cttctaccttctctttcacctgcgtgccattgggcttggccatgcgtggc
ccacggttggcacaaatatttggaatctgtgagtaaagaagctggaagtg
ggctcagaaaatgctgcccaggcccatgtaacagatgccggaggaaacac
atgtgagctcacacacacaggttgctggagtgagaggctgaagagggtag
gggtgggataagggactggagtgctcaaaggctgcagatcttccctctgg
gccttggggtggggggtgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113929938_113931086
seq2: B6Ng01-102F21.b_46_1191 (reverse)

seq1  AGATCGGAACTCTCACA--TGGCTGGTTGACTTTATCTTCTGCCGCTCCT  48
      ||||||| ||| |||||  ||||||||| ||||  |||||||||| ||||
seq2  AGATCGGGACT-TCACAATTGGCTGGTTAACTTATTCTTCTGCCGTTCCT  49

seq1  CCATCCCACCCTTTTTTCCCCAAGACCTGGCAATTCTGCCATTCCTCTCT  98
      |||| ||| |||||||||||||||| || |||| |||| |||||||||||
seq2  CCAT-CCAACCTTTTTTCCCCAAGA-CTTGCAA-TCTG-CATTCCTCTCT  95

seq1  GTGTCCTGCTCGAGCAACTCTAAGGGTCCCACCCGTGCCCGGCCATTGGC  148
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGT-CTGCTCGAGC-ACTCTAAGGGTCCCACCCGTGCCCGGCCATTGGC  143

seq1  ATCTTTATGGATCGATCAAAACCCAATTGGGGACAATGACCTTCAGCATC  198
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  ATCTTTATGGATCGATCAAAACCCAATTTGGGACAATGA-CTTCAGCATC  192

seq1  TGGACAGGCAGATTCCCGATTGAACTCAATTG-AAGTACTAGGACCAATC  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGACAGGCAGATTCCCGATTGAACTCAATTGAAAGTACTAGGACCAATC  242

seq1  TCCAGCACTCTATTGCC-TATCAGTGACCATGACAGAGCTACTCTGTGCC  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCAGCACTCTATTGCCTTATCAGTGACCATGACAGAGCTACTCTGTGCC  292

seq1  TCTCTTTCCTCTTTTGTAAAA-CCGAGGTGATGCGCATCAAATCTACACC  345
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTCTTTCCTCTTTTGTAAAACCCGAGGTGATGCGCATCAAATCTACACC  342

seq1  AAAAGGCCGGGCGGGCGAGAGCTCAGCAGCATTGAGAGCAGAGCTCCTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCGGGCGGGCGAGAGCTCAGCAGCATTGAGAGCAGAGCTCCTGT  392

seq1  TGTATCCGTGGAGCTCAGGAAGTGTGCCCTGTCACTGCGTCCCTGCACAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCGTGGAGCTCAGGAAGTGTGCCCTGTCACTGCGTCCCTGCACAG  442

seq1  ACAGGAGAGGGAGGAACTGGAGACCCCTGGTTTAAGGGACTCTTCCAGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGGGAGGAACTGGAGACCCCTGGTTTAAGGGACTCTTCCAGTC  492

seq1  ATCTACCCCCAGAGGCTGAGAGGGGCTGGCTTTTATTCTTCTCCCTCCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCCCCAGAGGCTGAGAGGGGCTGGCTTTTATTCTTCTCCCTCCCT  542

seq1  GTTTTTCATGTCAGCACTGCCTGTCCCTACTTTGGGGGACTTGACTCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATGTCAGCACTGCCTGTCCCTACTTTGGGGGACTTGACTCAAG  592

seq1  GCTAGGCTGTAGCTTCTCCCTGAATGCCCTGGGAGTTATTCAACTGACCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTGTAGCTTCTCCCTGAATGCCCTGGGAGTTATTCAACTGACCC  642

seq1  CTTCCCTGAGTGTGCCTGGCCAGCCCTCAGTACCCACATGCAGGCTCTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGAGTGTGCCTGGCCAGCCCTCAGTACCCACATGCAGGCTCTGC  692

seq1  TTGTCAGGGCCATGCTGTCTTTGAGTTTGAACTTAAGCAAAGCAGTGGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGGCCATGCTGTCTTTGAGTTTGAACTTAAGCAAAGCAGTGGAA  742

seq1  GGGGGCCGGGCAGAGGGCCTCCGGGGCTCACAAGAGTGGCCACTCAGTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCGGGCAGAGGGCCTCCGGGGCTCACAAGAGTGGCCACTCAGTCC  792

seq1  TATCTTTCCCAGGCTCTAGGGCACCCTGGGGCTTGCCTGTGGTTTTGCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCCAGGCTCTAGGGCACCCTGGGGCTTGCCTGTGGTTTTGCAG  842

seq1  CGTTGATGACAGGGCCGGTGCTAGAATCTGGGCTTTCCAAGACAAGGGTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGATGACAGGGCCGGTGCTAGAATCTGGGCTTTCCAAGACAAGGGTT  892

seq1  CCTCCTACTTTATACCAGCATGGTTTTCCTGTAACTTTGTAACAAGTGAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACTTTATACCAGCATGGTTTTCCTGTAACTTTGTAACAAGTGAC  942

seq1  CAAAGTGACAAGCTTATGCAGTACAGACTGAGTCTCATACTCTCCAGCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGACAAGCTTATGCAGTACAGACTGAGTCTCATACTCTCCAGCCC  992

seq1  AAACATATCAGCAAGCCAGGAAGGAGGCTGTCGTCCTCCTAGAACCTCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATCAGCAAGCCAGGAAGGAGGCTGTCGTCCTCCTAGAACCTCCA  1042

seq1  AAGCTGGGTTCAATTCCCCTTCTTTTCTAGCATGTGGAAATCACCTACCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGTTCAATTCCCCTTCTTTTCTAGCATGTGGAAATCACCTACCT  1092

seq1  GAGGCTCACTGCCCCTTGTGGTCCTAGCTCTGTGTTCAGTCTCCATCTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCACTGCCCCTTGTGGTCCTAGCTCTGTGTTCAGTCTCCATCTGA  1142

seq1  ATTC  1149
      ||||
seq2  ATTC  1146

seq1: chr5_113785597_113786174
seq2: B6Ng01-102F21.g_66_643

seq1  GAATTCAGCAGGGATGCAGAGAGGAACCCAGGGTGCTGGGTCGTGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGGATGCAGAGAGGAACCCAGGGTGCTGGGTCGTGGAATG  50

seq1  GTATCTAGAAAACACACTAACCAACCACCCATGCAATGTCACTGGGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGAAAACACACTAACCAACCACCCATGCAATGTCACTGGGTCCT  100

seq1  TGAGATGTCCTGCAAGCTGGAGCAGGGGCAGCTCTGGGATTGCAGCCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTCCTGCAAGCTGGAGCAGGGGCAGCTCTGGGATTGCAGCCGGC  150

seq1  TAAGGGAAGCCAGGGGGCGGGGTCTGTAAGGATGCTGGGGGCAGCTATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAGCCAGGGGGCGGGGTCTGTAAGGATGCTGGGGGCAGCTATCG  200

seq1  CTTTTTACAGGTCTTTTATACCCTAGAGCCTGGGCAGGCCATAAGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACAGGTCTTTTATACCCTAGAGCCTGGGCAGGCCATAAGGACAA  250

seq1  AGGGTGCCCGGGACACAAGCAGGTAGTTTGGAAGTTTGGTGTAAATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCCCGGGACACAAGCAGGTAGTTTGGAAGTTTGGTGTAAATTTAG  300

seq1  AAGCAACTTCTACCTTCTCTTTCACCTGCGTGCCATTGGGCTTGGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTCTACCTTCTCTTTCACCTGCGTGCCATTGGGCTTGGCCATG  350

seq1  CGTGGCCCACGGTTGGCACAAATATTTGGAATCTGTGAGTAAAGAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCCACGGTTGGCACAAATATTTGGAATCTGTGAGTAAAGAAGCTG  400

seq1  GAAGTGGGCTCAGAAAATGCTGCCCAGGCCCATGTAACAGATGCCGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGCTCAGAAAATGCTGCCCAGGCCCATGTAACAGATGCCGGAGG  450

seq1  AAACACATGTGAGCTCACACACACAGGTTGCTGGAGTGAGAGGCTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGTGAGCTCACACACACAGGTTGCTGGAGTGAGAGGCTGAAGA  500

seq1  GGGTAGGGGTGGGATAAGGGACTGGAGTGCTCAAAGGCTGCAGATCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGGTGGGATAAGGGACTGGAGTGCTCAAAGGCTGCAGATCTTCC  550

seq1  CTCTGGGCCTTGGGGTGGGGGGTGGGAT  578
      ||||||||||||||||||||||||||||
seq2  CTCTGGGCCTTGGGGTGGGGGGTGGGAT  578