BAC Information

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BAC

Clone NameB6Ng01-102K07
Chromosome5 (Build37)
Map Location 58,996,971 - 59,160,954
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666465, Pcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102K07.bB6Ng01-102K07.g
ACCDH911474DH911475
length1,056545
definitionDH911474|Mus musculus domesticus DNA, BAC clone: B6Ng01-102K07, 5' end.DH911475|Mus musculus domesticus DNA, BAC clone: B6Ng01-102K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,996,971 - 58,997,825)(59,160,404 - 59,160,954)
sequence
gaattcactgtttagctctgttccccatttttaatagggttatttggttc
tctggagtctaactctttggctctttgtgtatattggacatcagacttct
attggatgttgggttagtaaagatcttttcccaatctggttattgctccc
ttgacctattgacaatgtcttttgcctttgcaattttatgaggtcccatt
tgtcaattcttgatcttagagcataaggcattggtgttctgttcaggaac
ttttcccctgtgcccatgtgttcgagacttttcccactttctcttctgtt
ggattcagtatatctggttttgtgtggacgcccttgatccacttagactt
gagctttgtacagggaaataagaatggatcaatttgctttctacatatcg
actgcctgttgaaccagcacaatttgttaaaaatgctatcttttatccac
tggatagttttagttcttttgtcaaagatcaagtgaccgtgggtgtgttg
gttcatttctgggtcttcaattctattccactgatcaacctgcctttcac
tgtagaataccattcagtttttattacaattgctttgtagtacagcttga
ggtcagggatgctgattcccccagaatttcttttattgttgagaatagtt
tttgctatcatgagttttttttgttttgttttgtttttttttttttggtt
tttttttttttttttttgttattctgaaggaatttgagaattgctctttc
taactgtggtatatttacacaatggaatactactcagctattaaaagaag
gaatcataaaattcgcagtgaaatagattgaacttgagaatattatttca
tgtgacaatctccaaggaacaaacaggtatgcactcactgataagtagat
attagcccaaagtttggaatatccagattcaattccaagacctattaggc
taagaagaaggaaaccacatgtggatgctgaagtgttttttgaaagttaa
aaaatactcccacaaggaaatgccgaaatgttgtagcagaactgattgaa
gtcatc
atgtatacaccagccacactaaacagacccatgcggtaatattatataaa
tgtatgtacaatgacatttatcaagagtttttattagggttttattgcta
tgaagaaggcaacttttatacagggtaatatttaatccgggctagcttac
aattctcaaggcttagtccgttatcaccatcatcattatcatcatcatag
tgggaagtgtggtactgtacaggcagacatggggctgcaggagccaagag
ttctacattttgatcccaaggcaatcaagagaagactgacttacactgga
cagagcttgagcataggagacttcaacatgtctgccccaacagtaaaaca
ctttccccaataaggccacaccacacaataagttattgtgaggaaacatg
tctatgtatataatatatttaattactaaatctaaaaggcccttaaatct
catatcaacatctctctctctctctgtctctgtctctctgtctctctctg
tctctctctgtctctctctgtctctctctgtctctctctgtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58996971_58997825
seq2: B6Ng01-102K07.b_264_1098

seq1  CATAAGGCATTGGTGTTCTGTTCAGGAACTTTTCCCCTGTGCCCATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCATTGGTGTTCTGTTCAGGAACTTTTCCCCTGTGCCCATGTGT  50

seq1  TCGAGACTTTTCCCACTTTCTCTTCTGTTGGATTCAGTATATCTGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACTTTTCCCACTTTCTCTTCTGTTGGATTCAGTATATCTGGTTTT  100

seq1  GTGTGGACGCCCTTGATCCACTTAGACTTGAGCTTTGTACAGGGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACGCCCTTGATCCACTTAGACTTGAGCTTTGTACAGGGAAATAA  150

seq1  GAATGGATCAATTTGCTTTCTACATATCGACTGCCTGTTGAACCAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATCAATTTGCTTTCTACATATCGACTGCCTGTTGAACCAGCACA  200

seq1  ATTTGTTAAAAATGCTATCTTTTATCCACTGGATAGTTTTAGTTCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAAAATGCTATCTTTTATCCACTGGATAGTTTTAGTTCTTTTG  250

seq1  TCAAAGATCAAGTGACCGTGGGTGTGTTGGTTCATTTCTGGGTCTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCAAGTGACCGTGGGTGTGTTGGTTCATTTCTGGGTCTTCAAT  300

seq1  TCTATTCCACTGATCAACCTGCCTTTCACTGTAGAATACCATTCAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCACTGATCAACCTGCCTTTCACTGTAGAATACCATTCAGTTTT  350

seq1  TATTACAATTGCTTTGTAGTACAGCTTGAGGTCAGGGATGCTGATTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAATTGCTTTGTAGTACAGCTTGAGGTCAGGGATGCTGATTCCCC  400

seq1  CAGAATTTCTTTTATTGTTGAGAATAGTTTTTGCTATCATGAGTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCTTTTATTGTTGAGAATAGTTTTTGCTATCATGAGTTTTTTT  450

seq1  TGTTTTGTTTTGTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTGTTA  500

seq1  TTCTGAAGGAATTTGAGAATTGCTCTTTCTAACTGTGGTATATTTACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGAATTTGAGAATTGCTCTTTCTAACTGTGGTATATTTACACA  550

seq1  ATGGAATACTACTCAGCTATTAAAAAGAAGGAAATCATAAAATTCGCAGT  600
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  ATGGAATACTACTCAGCTATT-AAAAGAAGG-AATCATAAAATTCGCAGT  598

seq1  GAAATAGATTGAACTTGAGAATATTATTTCATGTGACAATCTCCAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGATTGAACTTGAGAATATTATTTCATGTGACAATCTCCAAGGAA  648

seq1  CAAACAGGGTATGCACTCACTGATAAGTAGATATTAGCCCAAAGGTTTGG  700
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAACA-GGTATGCACTCACTGATAAGTAGATATTAGCCCAAA-GTTTGG  696

seq1  AATATCCAAGATTCAATTCACAGATCATAATAAGCCTAAGAAGAAGGAAA  750
      ||||||| |||||||||||  ||| |   || || |||||||||||| ||
seq2  AATATCC-AGATTCAATTCCAAGACC--TATTAGGCTAAGAAGAAGG-AA  742

seq1  ACCACATTGTGGATGCTGAAGTGCTTTTTTTGAAGGGTAAACAAAATACT  800
      |||||| ||||||||||||||||  ||||||||| | |||  ||||||||
seq2  ACCACA-TGTGGATGCTGAAGTG--TTTTTTGAAAGTTAA--AAAATACT  787

seq1  CACACAAGGAAATATGCAGAAAATGTGTGTAGCAGAGACTGAATGAAAGG  850
      | |||||||||  |||| | |||||| ||||||||| ||||| ||||  |
seq2  CCCACAAGGAA--ATGCCG-AAATGT-TGTAGCAGA-ACTGATTGAA--G  830

seq1  TCATC  855
      |||||
seq2  TCATC  835

seq1: chr5_59160404_59160954
seq2: B6Ng01-102K07.g_71_621 (reverse)

seq1  AGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAG  50

seq1  AGAGACAGAGAGACAGAGACAGAGAGAGAGAGAGATGTTGATATGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGACAGAGACAGAGAGAGAGAGAGATGTTGATATGAGATT  100

seq1  TAAGGGCCTTTTAGATTTAGTAATTAAATATATTATATACATAGACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCTTTTAGATTTAGTAATTAAATATATTATATACATAGACATGT  150

seq1  TTCCTCACAATAACTTATTGTGTGGTGTGGCCTTATTGGGGAAAGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACAATAACTTATTGTGTGGTGTGGCCTTATTGGGGAAAGTGTTT  200

seq1  TACTGTTGGGGCAGACATGTTGAAGTCTCCTATGCTCAAGCTCTGTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTGGGGCAGACATGTTGAAGTCTCCTATGCTCAAGCTCTGTCCAG  250

seq1  TGTAAGTCAGTCTTCTCTTGATTGCCTTGGGATCAAAATGTAGAACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCAGTCTTCTCTTGATTGCCTTGGGATCAAAATGTAGAACTCTT  300

seq1  GGCTCCTGCAGCCCCATGTCTGCCTGTACAGTACCACACTTCCCACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGCAGCCCCATGTCTGCCTGTACAGTACCACACTTCCCACTATG  350

seq1  ATGATGATAATGATGATGGTGATAACGGACTAAGCCTTGAGAATTGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATAATGATGATGGTGATAACGGACTAAGCCTTGAGAATTGTAAG  400

seq1  CTAGCCCGGATTAAATATTACCCTGTATAAAAGTTGCCTTCTTCATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCGGATTAAATATTACCCTGTATAAAAGTTGCCTTCTTCATAGCA  450

seq1  ATAAAACCCTAATAAAAACTCTTGATAAATGTCATTGTACATACATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCCTAATAAAAACTCTTGATAAATGTCATTGTACATACATTTAT  500

seq1  ATAATATTACCGCATGGGTCTGTTTAGTGTGGCTGGTGTATACATGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTACCGCATGGGTCTGTTTAGTGTGGCTGGTGTATACATGAATT  550

seq1  C  551
      |
seq2  C  551