BAC Information

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BAC

Clone NameB6Ng01-103A23
Chromosome5 (Build37)
Map Location 64,662,333 - 64,771,820
singlet/doubletdoublet
Overlap geneTbc1d1, Ppia-ps22
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1
Downstream geneLOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A23.bB6Ng01-103A23.g
ACCDH911767DH911768
length1,123989
definitionDH911767|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A23, 5' end.DH911768|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,662,333 - 64,663,460)(64,770,828 - 64,771,820)
sequence
gaattcatctaaaaccaaattagaactccagaagcacttgaccacactga
ccaatcaggagcaggccaccatattcgaggaggttcaggtacagtagccg
ggaagcacagcagggagcgtgcttgtggagtgtcctgtgggtggtgagga
gtcagcggtgccaccacttcccaggggcatgagccagtgtcctgttaaaa
cctgggtagaccaggaggcaggaggccacatgctctcctttgctcctggg
agcctccgtcagtctcttcccatgaagtcacaaggcatttgtacatgggt
ttgagcacaactggcccttctgtattttttgttgtctgttttgaaaatgt
atgtgtcatatgttagagccttaaactgaaacgcaaaaatcaaaacagac
tgaaaccagcaaacacagaagcacacacatgagctgcatgcgttagacct
ggaagtctgcttttaccatgcttgaagctgctgcatctggggaaaccagg
ccacagtgtcaggcctgcctaaggcctgcttgtcaggagggagctcaaca
cggatttcatgtctgccagaacctggagccatttttgtggggttttggca
agtgcagtaagacaaagaattaatacgtctttgcgtgtgtgcatgtgtgt
gtgttgtgtgtgcccactagtgccttgtcaagttccacagttaggggcca
actaaaccagacaagcaggtagccatgcctttgttctcatccctgtgagg
gaggggatgaaaaggctcagctttctttctgttctcactaaagttcttca
gttcccttgttctgtaggcttggcatacatttgtagaaagaataggaaga
ttttgtggtggttgttttcatttagcagatggccttgagggttgttttat
ttgcctgtgctttgcttcttattcttaatgcattgcaactgcagccaagg
ccatcagtgtgaacccacttaggccacgtgctaccaggtcactcgagagc
atcttctggcagcagcagcagcagggaagatgcacctcccttcctaatgg
tttcactttgatgtagacaagcacccacgtagcttccctggagcagaagg
gggcggtgcttaggaaggcagtt
gaattccttactctgcctttaggtcctcctggtgtagctgagcctgtaca
gtttcctcacactggattttcttgtcccaaagccactgagtcacgggcag
ccattcacaccacttctcaaagatgcgggtcagcttccagatgtggaatc
agaggactccagctgtgggtagcagggatagttaaacacgccagggccac
atcgatcctgaacatccctagacttctttcttgtccattttctctaaagt
ataagaagaacattggcttgcatagcatttacattgtattgagtgtaatg
ataactttaaaatatgtatttatgcatgtaagatgctacttaaagcattc
aggaaatgtgcacaggttattttttaaatataccttatttcatttatttg
tttgcttgtttgttattcatttacttatttgggactcggggggacgacag
ggtcacaatgttgtcttacaactcctaggctcaagggtctctcctgccca
agcctttctagtggtgggactcgaggcagaagccaccactgagggtgtga
agggactgcagatgtgacatgtagatctggagtgggccctgtttccagga
gatcaacctacaggagacttggtgtctatctgcggttcagtgagcagagg
gtctctctcctgaccctctcctgactcctcctcctctggattgcaggcct
ttcctctgaagaccccaaaaacccacagagaaggaaaggaggtaagagcc
gaattcagaggcaggcaaagggagcttacgttgtcactcttccttggatg
cacatgcacttccaggcgctccagctataaatgggccacccacccatccc
tgagctgtggatctctggcctgtgctggtcttacttgtggctccctgtct
taggtctctttctgtctctttcagttggtaaagtgggtgggtatggattg
atggaagtctcaaactcaaggacaagatttcaagcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64662333_64663460
seq2: B6Ng01-103A23.b_44_1166

seq1  GAATTCATCTAAAACCAAATTAGAACTCCAGAAGCACTTGACCACACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAAACCAAATTAGAACTCCAGAAGCACTTGACCACACTGA  50

seq1  CCAATCAGGAGCAGGCCACCATATTCGAGGAGGTTCAGGTACAGTAGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGGAGCAGGCCACCATATTCGAGGAGGTTCAGGTACAGTAGCCG  100

seq1  GGAAGCACAGCAGGGAGCGTGCTTGTGGAGTGTCCTGTGGGTGGTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACAGCAGGGAGCGTGCTTGTGGAGTGTCCTGTGGGTGGTGAGGA  150

seq1  GTCAGCGGTGCCACCACTTCCCAGGGGCATGAGCCAGTGTCCTGTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGGTGCCACCACTTCCCAGGGGCATGAGCCAGTGTCCTGTTAAAA  200

seq1  CCTGGGTAGACCAGGAGGCAGGAGGCCACATGCTCTCCTTTGCTCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAGACCAGGAGGCAGGAGGCCACATGCTCTCCTTTGCTCCTGGG  250

seq1  AGCCTCCGTCAGTCTCTTCCCATGAAGTCACAAGGCATTTGTACATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCGTCAGTCTCTTCCCATGAAGTCACAAGGCATTTGTACATGGGT  300

seq1  TTGAGCACAACTGGCCCTTCTGTATTTTTTGTTGTCTGTTTTGAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACAACTGGCCCTTCTGTATTTTTTGTTGTCTGTTTTGAAAATGT  350

seq1  ATGTGTCATATGTTAGAGCCTTAAACTGAAACGCAAAAATCAAAACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATATGTTAGAGCCTTAAACTGAAACGCAAAAATCAAAACAGAC  400

seq1  TGAAACCAGCAAACACAGAAGCACACACATGAGCTGCATGCGTTAGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGCAAACACAGAAGCACACACATGAGCTGCATGCGTTAGACCT  450

seq1  GGAAGTCTGCTTTTACCATGCTTGAAGCTGCTGCATCTGGGGAAACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTGCTTTTACCATGCTTGAAGCTGCTGCATCTGGGGAAACCAGG  500

seq1  CCACAGTGTCAGGCCTGCCTAAGGCCTGCTTGTCAGGAGGGAGCTCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTCAGGCCTGCCTAAGGCCTGCTTGTCAGGAGGGAGCTCAACA  550

seq1  CGGATTTCATGTCTGCCAGAACCTGGAGCCATTTTTGTGGGGTTTTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCATGTCTGCCAGAACCTGGAGCCATTTTTGTGGGGTTTTGGCA  600

seq1  AGTGCAGTAAGACAAAGAATTAATACGTCTTTGCGTGTGTGCATGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGTAAGACAAAGAATTAATACGTCTTTGCGTGTGTGCATGTGTGT  650

seq1  GTGTTGTGTGTGCCCACTAGTGCCTTGTCAAGTTCCACAGTTAGGGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGTGTGCCCACTAGTGCCTTGTCAAGTTCCACAGTTAGGGGCCA  700

seq1  ACTAAACCAGACAAGCAGGTAGCCATGCCTTTGTTCTCATCCCTGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCAGACAAGCAGGTAGCCATGCCTTTGTTCTCATCCCTGTGAGG  750

seq1  GAGGGGATGAAAAGGCTCAGCTTTCTTTCTGTTCTCACTAAAGTTCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGAAAAGGCTCAGCTTTCTTTCTGTTCTCACTAAAGTTCTTCA  800

seq1  GTTCCCTTGTTCTGTAGGCTTGGCATACATTTGTAGAAAGAATAGGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGTTCTGTAGGCTTGGCATACATTTGTAGAAAGAATAGGAAGA  850

seq1  TTTTGTGGTGGTTGTTTTCATTTAGCAGATGGCCTTGAGGGTTGTTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTGGTTGTTTTCATTTAGCAGATGGCCTTGAGGGTTGTTTTAT  900

seq1  TTGCCTGTGCTTTGCTTCTTATTCTTAATGCATTGCAACTGCAGCCAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTGCTTTGCTTCTTATTCTTAATGCATTGCAACTGCAGCCAAGG  950

seq1  CCATCAGTGTGAACCCACTTAGGCCACGGTGCTACCAGGTCACTCGAGAG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATCAGTGTGAACCCACTTAGGCCAC-GTGCTACCAGGTCACTCGAGAG  999

seq1  CATCTTCCTGGCAGGCAGGCAGGCAGGCAGGGAAGATGCACCTCCCTTCC  1050
      |||||| |||||| ||| ||| ||| |||||||||||||||||||||| |
seq2  CATCTT-CTGGCA-GCA-GCA-GCA-GCAGGGAAGATGCACCTCCCTT-C  1043

seq1  CTAATGGTTTTCACTTTGATGTAGAC-AGCA-CCACGTAGCTTTCCCTGA  1098
      ||||||| |||||||||||||||||| |||| ||||||||||| ||  ||
seq2  CTAATGG-TTTCACTTTGATGTAGACAAGCACCCACGTAGCTTCCCTGGA  1092

seq1  GCAGA--GGGGCGGTGCCTTAGGAAGGCAGTT  1128
      |||||  ||||||||| |||||||||||||||
seq2  GCAGAAGGGGGCGGTG-CTTAGGAAGGCAGTT  1123

seq1: chr5_64770828_64771820
seq2: B6Ng01-103A23.g_66_1054 (reverse)

seq1  AAGTGCTTGATATTCTTGTCCTTGGGGTTTGAGACTTCCATCAATCCATA  50
      |||||||||| | |||||||||| | ||||||||||||||||||||||||
seq2  AAGTGCTTGA-AATCTTGTCCTT-GAGTTTGAGACTTCCATCAATCCATA  48

seq1  CCCACCCACTTTACCAACTGGAAAGAGAACAGAAAGAGACCTAAGACAGG  100
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CCCACCCACTTTACCAACT-GAAAGAG-ACAGAAAGAGACCTAAGACAGG  96

seq1  GAGCCACAAGTAAGACCAGCACAGGCCAGAGATCCACAGCTCAGGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAAGTAAGACCAGCACAGGCCAGAGATCCACAGCTCAGGGATGG  146

seq1  GTGGGTGGCCCATTTATAGCTGGAGCGCCTGGAAGTGCATGTGCATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGCCCATTTATAGCTGGAGCGCCTGGAAGTGCATGTGCATCCAA  196

seq1  GGAAGAGTGACAACGTAAGCTCCCTTTGCCTGCCTCTGAATTCGGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTGACAACGTAAGCTCCCTTTGCCTGCCTCTGAATTCGGCTCTT  246

seq1  ACCTCCTTTCCTTCTCTGTGGGTTTTTGGGGTCTTCAGAGGAAAGGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTTCCTTCTCTGTGGGTTTTTGGGGTCTTCAGAGGAAAGGCCTG  296

seq1  CAATCCAGAGGAGGAGGAGTCAGGAGAGGGTCAGGAGAGAGACCCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGAGGAGGAGGAGTCAGGAGAGGGTCAGGAGAGAGACCCTCTGC  346

seq1  TCACTGAACCGCAGATAGACACCAAGTCTCCTGTAGGTTGATCTCCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAACCGCAGATAGACACCAAGTCTCCTGTAGGTTGATCTCCTGGA  396

seq1  AACAGGGCCCACTCCAGATCTACATGTCACATCTGCAGTCCCTTCACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCCCACTCCAGATCTACATGTCACATCTGCAGTCCCTTCACACC  446

seq1  CTCAGTGGTGGCTTCTGCCTCGAGTCCCACCACTAGAAAGGCTTGGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTGGCTTCTGCCTCGAGTCCCACCACTAGAAAGGCTTGGGCAG  496

seq1  GAGAGACCCTTGAGCCTAGGAGTTGTAAGACAACATTGTGACCCTGTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCTTGAGCCTAGGAGTTGTAAGACAACATTGTGACCCTGTCGT  546

seq1  CCCCCCGAGTCCCAAATAAGTAAATGAATAACAAACAAGCAAACAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGAGTCCCAAATAAGTAAATGAATAACAAACAAGCAAACAAATAA  596

seq1  ATGAAATAAGGTATATTTAAAAAATAACCTGTGCACATTTCCTGAATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAGGTATATTTAAAAAATAACCTGTGCACATTTCCTGAATGCT  646

seq1  TTAAGTAGCATCTTACATGCATAAATACATATTTTAAAGTTATCATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGCATCTTACATGCATAAATACATATTTTAAAGTTATCATTACA  696

seq1  CTCAATACAATGTAAATGCTATGCAAGCCAATGTTCTTCTTATACTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACAATGTAAATGCTATGCAAGCCAATGTTCTTCTTATACTTTAG  746

seq1  AGAAAATGGACAAGAAAGAAGTCTAGGGATGTTCAGGATCGATGTGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGACAAGAAAGAAGTCTAGGGATGTTCAGGATCGATGTGGCCC  796

seq1  TGGCGTGTTTAACTATCCCTGCTACCCACAGCTGGAGTCCTCTGATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGTTTAACTATCCCTGCTACCCACAGCTGGAGTCCTCTGATTCCA  846

seq1  CATCTGGAAGCTGACCCGCATCTTTGAGAAGTGGTGTGAATGGCTGCCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAAGCTGACCCGCATCTTTGAGAAGTGGTGTGAATGGCTGCCCG  896

seq1  TGACTCAGTGGCTTTGGGACAAGAAAATCCAGTGTGAGGAAACTGTACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTGGCTTTGGGACAAGAAAATCCAGTGTGAGGAAACTGTACAG  946

seq1  GCTCAGCTACACCAGGAGGACCTAAAGGCAGAGTAAGGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTACACCAGGAGGACCTAAAGGCAGAGTAAGGAATTC  989