BAC Information

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BAC

Clone NameB6Ng01-103C06
Chromosome19 (Build37)5 (Build37)
Map Location 34,798,640 - 34,799,83818,084,511 - 18,084,577
singlet/doubletsingletsinglet
Overlap geneSlc16a12
Upstream geneEG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1
Downstream geneLOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103C06.bB6Ng01-103C06.g
ACCDH911825DH911826
length1,182987
definitionDH911825|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C06, 5' end.DH911826|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,798,640 - 34,799,838)(18,084,511 - 18,084,577)
sequence
gaattcgggttttctggtagccattgggatagatgacgtgcaggctaagc
aggtggattagaaagttttgttttgtatttgtctgctagggagtttgatg
ggactagtgtctagtcaagggccattttataaccagtaaattgactttat
gagatttaccattttgatcgatcttcagcgtcattttctgaaatgagtgt
ttgcttttgttactgtggctgagatataactctggcttaactctgtttga
gaaccaagagtatgatgctcactgcatccaggctgtggggaaccatgtga
cgtggtgccattgttgcctttgttcagataagggaggaatcgagagctga
tgactgcttgcagggaaggagttgctataaaagatcagctcagtatcgga
atgggcgaggcaagttcatctctatcgttttcatcattttacacctaagc
aacaatgtctctgcttctttctcctcagcatttcctccctgggttcagat
ttctcagactttccatgcagaagcggctgatgcctgcagggcttggctct
ctgtctccttcctcctttgtgcttcctgctttcagacacagtgggttatc
cagctccacaaatcttcccaggcattctgttctttccctttacagtagtc
ctggctagcacaggtcttagggatccagatgtggtggccacagtgcaaac
tccattggcagcatccctgccactcttactgtggagttttgctcatcagt
tacagagggtcctcaatttatgaagatgtttgacttaagtgatgattagt
gatgattgtcaacttgcaaatctaaaatcacctgggagatgggcctctca
gatcatcagtgggagactgtcttgattatgctaattagactgggaagacc
caccactgtaggcagtaccattccctaagcaggagaccctgaactgtata
agcctggagaagtgagctgagccctggcctgcattcatcactgcgaccac
atgtggccatctcctttagatcctggtgctttgaatcctccagcggaccg
actgtacttaaactgtgagcctggagtgaagccctttctcctgtgtgttt
ttgtcagagcatttaaaccgacacgaaaataaactagacaacttatgact
agttcgagctttgaaaatcatcaatggatata
gaattcaagaagatggactccagaaaatcaaataaccccattaaaaatgg
ggctcagatctgaacaaagaattctcacctgaggaataccgaatggctga
gaagcatcagaaaaaatgttcaacaaccttaatcatcagggaaatgcaaa
tcaaaacaatcctgagattccacctcacaaaagtcataatggctaagatc
aaaaattaacctgatagcagatgctggcaaggatgtggagaaagaggaac
actcctccattgttggtgggattgcaagcttggacaatcactctggaaat
cagttgggcggttcctcagaaaattggacatagtactactagaggtcccg
caatacctctcctgggcatatatccagaagatattccaactggtaagaag
gacacatgctcctctatgttcatagcagccttatttataatagccagaag
ctggaaagaacccagatgcccctcaacagaggaatggatacagaaagtgt
ggtacatctacacaatggagtactactcagcgattaaaaagaatgaattt
atgaaattcctaggcaactggttggacctggagggcatcatcctgagtga
ggtaacccaatcaaaaaggaactcacacaatatgtactcactgataagtg
gatattagcccagaaacttaggatacccaagatataagatataatttgct
aaacgcatgaaactcaagaagaatgaagaccaaagtgtggacacgttgcc
ccttcttagaattgggaacaaaacacccatggaaggagctacagagacaa
aatttggagctgagacgaaaggatggaccatatagagactgccttatcca
gggtccatcccataatcagcttccaaatgctgacaccattgcatgcacta
gcaagattttgctgaaaggaccctgatatagttgtctcttgtgagactac
cacgggtctagcaacacagaagtggatgctcacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34798640_34799838
seq2: B6Ng01-103C06.b_43_1224 (reverse)

seq1  TATATCACTTTGATGATATTTCAAAGTTTGAAACTAGTCATAAGTTGTCT  50
      |||||| | |||||||| |||||||| | | |||||||||||||||||| 
seq2  TATATC-CATTGATGAT-TTTCAAAGCTCG-AACTAGTCATAAGTTGTC-  46

seq1  TAGTTTATTTTCTGTTGTCGTGTTAAAATGCTCTGACAAAAACCAACACA  100
      ||||||||||||   ||||| ||| ||||||||||||||||||  |||||
seq2  TAGTTTATTTTC--GTGTCG-GTTTAAATGCTCTGACAAAAAC--ACACA  91

seq1  AGGGAGAAAGGGCTTCACTTCA-GCTCACAGTTCTAAGTTACAGTCCGTT  149
        ||||||||||||||||| || |||||||||| |||| |||||| || |
seq2  --GGAGAAAGGGCTTCACTCCAGGCTCACAGTT-TAAG-TACAGT-CGGT  136

seq1  CCGCTGGAGAATTCAAAGCACCAGGATCTTAAAGGAGATGGCCACATTGT  199
      ||||||||| |||||||||||||||||| ||||||||||||||||| |||
seq2  CCGCTGGAGGATTCAAAGCACCAGGATC-TAAAGGAGATGGCCACA-TGT  184

seq1  GTCCGCAGTGATGAATGCAGGCCAGGGCTCAGCTCACTTCCTCCAGGCTT  249
      |  |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTCGCAGTGATGAATGCAGGCCAGGGCTCAGCTCACTT-CTCCAGGCTT  233

seq1  ATACAGTTCAGGGTCTCCTGCTTAGGGAATGGTACTGCCTACAGTGGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCAGGGTCTCCTGCTTAGGGAATGGTACTGCCTACAGTGGTGG  283

seq1  GTCTTCCCAGTCTAATTAGCATAATCAAGACAGTCTCCCACTGATGATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCAGTCTAATTAGCATAATCAAGACAGTCTCCCACTGATGATCT  333

seq1  GAGAGGCCCATCTCCCAGGTGATTTTAGATTTTGCAAGTTGACAATCATC  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGAGGCCCATCTCCCAGGTGATTTTAGA-TTTGCAAGTTGACAATCATC  382

seq1  ACTAATCATCACTTAAGTCAAACATCTTCATAAATTGAGGACCCTCTGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCATCACTTAAGTCAAACATCTTCATAAATTGAGGACCCTCTGTA  432

seq1  ACTGATGAGCAAAACTCCACAGTAAGAGTGGCAGGGATGCTGCCAATGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAGCAAAACTCCACAGTAAGAGTGGCAGGGATGCTGCCAATGGA  482

seq1  GTTTGCACTGTGGCCACCACATCTGGATCCCTAAGACCTGTGCTAGCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCACTGTGGCCACCACATCTGGATCCCTAAGACCTGTGCTAGCCAG  532

seq1  GACTACTGTAAAGGGAAAGAACAGAATGCCTGGGAAGATTTGTGGAGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTGTAAAGGGAAAGAACAGAATGCCTGGGAAGATTTGTGGAGCTG  582

seq1  GATAACCCACTGTGTCTGAAAGCAGGAAGCACAAAGGAGGAAGGAGACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCCACTGTGTCTGAAAGCAGGAAGCACAAAGGAGGAAGGAGACAG  632

seq1  AGAGCCAAGCCCTGCAGGCATCAGCCGCTTCTGCATGGAAAGTCTGAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAGCCCTGCAGGCATCAGCCGCTTCTGCATGGAAAGTCTGAGAA  682

seq1  ATCTGAACCCAGGGAGGAAATGCTGAGGAGAAAGAAGCAGAGACATTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACCCAGGGAGGAAATGCTGAGGAGAAAGAAGCAGAGACATTGTT  732

seq1  GCTTAGGTGTAAAATGATGAAAACGATAGAGATGAACTTGCCTCGCCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGTGTAAAATGATGAAAACGATAGAGATGAACTTGCCTCGCCCAT  782

seq1  TCCGATACTGAGCTGATCTTTTATAGCAACTCCTTCCCTGCAAGCAGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATACTGAGCTGATCTTTTATAGCAACTCCTTCCCTGCAAGCAGTCA  832

seq1  TCAGCTCTCGATTCCTCCCTTATCTGAACAAAGGCAACAATGGCACCACG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTCGATTCCTCCCTTATCTGAACAAAGGCAACAATGGCACCACG  882

seq1  TCACATGGTTCCCCACAGCCTGGATGCAGTGAGCATCATACTCTTGGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGTTCCCCACAGCCTGGATGCAGTGAGCATCATACTCTTGGTTC  932

seq1  TCAAACAGAGTTAAGCCAGAGTTATATCTCAGCCACAGTAACAAAAGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAGTTAAGCCAGAGTTATATCTCAGCCACAGTAACAAAAGCAA  982

seq1  ACACTCATTTCAGAAAATGACGCTGAAGATCGATCAAAATGGTAAATCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATTTCAGAAAATGACGCTGAAGATCGATCAAAATGGTAAATCTC  1032

seq1  ATAAAGTCAATTTACTGGTTATAAAATGGCCCTTGACTAGACACTAGTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCAATTTACTGGTTATAAAATGGCCCTTGACTAGACACTAGTCC  1082

seq1  CATCAAACTCCCTAGCAGACAAATACAAAACAAAACTTTCTAATCCACCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACTCCCTAGCAGACAAATACAAAACAAAACTTTCTAATCCACCT  1132

seq1  GCTTAGCCTGCACGTCATCTATCCCAATGGCTACCAGAAAACCCGAATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCCTGCACGTCATCTATCCCAATGGCTACCAGAAAACCCGAATTC  1182

seq1: chr5_18084511_18084577
seq2: B6Ng01-103C06.g_448_514 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGAGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      |||||||||||||||||
seq2  CTTCTTACCAGTTGGAA  67