BAC Information

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BAC

Clone NameB6Ng01-103I10
Chromosome5 (Build37)
Map Location 14,996,189 - 15,139,210
singlet/doubletdoublet
Overlap geneSpeer4c, Speer4d
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103I10.bB6Ng01-103I10.g
ACCDH912089DH912090
length8721,122
definitionDH912089|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I10, 5' end.DH912090|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,996,189 - 14,997,017)(15,138,076 - 15,139,210)
sequence
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acacacatacacacatgcacacatacacacatacacacatacacacatac
acacatatacacatacacacatacacacatacacacctacacacatacac
acatacaaacatacacacacacacacacatacacacatacacacatacac
acatacacacatacacacatacaattggtttgtctgtttagttttggttg
ggtttgaggtgtggttgttgttggtttgtttttgaaacagagtctgtcta
tgtagccctggctgtcatggaatttgctttgtagaccaggctggcctcaa
attcagagattcaccttcttctgtcttctgagaactagtagtcaagtctc
ctcgcccagcagtttgaactgttggattaaagcttttggacatttgccta
ctttatcttttctgttaagatagaaaaaagaatagcctattattcaaatt
tcccaaaaaattaatttatttgccgtcacggctggaatgcagatataaaa
aaatcaaaatggttggaacttaaaaacaaaaataaaaagattaagaaaat
ctttaataatttctcttctcataactgacgggccactcgtctagctcatg
aatcataaggttgtacagcataatagagtagccgccgcttctcacagcat
gtcgtcaattatataatgatgaatcatgtgtcgatagaccagcagttcta
tcatcgtggtattattccttctacttcacagctgacatcattagacctca
taaaataatacatacatatcctatcatcacacgatgttctgtattgttag
caaggtctgctttgtgttactg
gaattcacatggaattaaatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagtactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacacataacaagaaaaatccatatagtacaagtcttaggtgtta
gctgaattttcaaatcagaaagcaaagagaaatttacattttcagtaact
ttaggatctgtgagtgttgttaatttaaatacagttatgaggagtccagg
tacaagaggatattaggccatgcaatcatatacggagatacagaagctac
atagtacttcaagtgttgctatcatatatgtctaagtgacattttacaga
ttaatgccaagtaaaatcaaaatatagtcccctacccattacatcttaaa
acacaatgatctatcaacagttgccatttcacagcaggaagaaagcagta
ggtataaattgaacacagaactgcttctcttgtaagaaatgaacacagat
atatagaacatgtacacttatacattctctttgaaattcaaggtggttaa
tttgctttactaccatataaaaacaatctcgctgtggtcagggaaaaaag
ctcattttccacatttaaaaagtacattggccgggtgtggtggcacacgc
ctttaatcccagctctggggaggcagaggcaggcagatttctgagttgga
ggccagcctggtctacaaagtgagttccaggatagccagagctatacaga
gaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaagtacacattgt
ctctggcaaggaatcacatccatagaccacttagacctatgtgatttggc
tagaatgcagacataccctaattacacacggttaatcccaacatgaaagt
aaggttcatttatagaaggaagagtcatgtttgtaagtgacatctattga
ggggcaaagtgataattcagagagataacagatgagtcagagatagatat
gccctatctaatgagacagcgagcaagaagacttagagagttggggaggg
aggcagatacagagacggttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14996189_14997017
seq2: B6Ng01-103I10.b_43_914

seq1  GAATTTACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50

seq1  ACACACATACACACATACACACATACACACATACACACATACACACA---  97
      |||||||||||||||| ||||||||||||||||||||||||||||||   
seq2  ACACACATACACACATGCACACATACACACATACACACATACACACATAC  100

seq1  -------------------------------------TACACACATACAC  110
                                           |||||||||||||
seq2  ACACATATACACATACACACATACACACATACACACCTACACACATACAC  150

seq1  ACATACACACACACACACACACACACACATAC------ACACACATACAC  154
      ||||||| ||| ||||||||||||||||||||      ||||||||||||
seq2  ACATACAAACATACACACACACACACACATACACACATACACACATACAC  200

seq1  ACATACACACATACACACAAACAATTGGTTTGTCTGTTTAGTTTTGGATG  204
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  ACATACACACATACACACATACAATTGGTTTGTCTGTTTAGTTTTGGTTG  250

seq1  GGTTTGAGGTATGGTTGTTGTTGGTTTGTTTTTGAAAC--AGTCTGTCTA  252
      |||||||||| |||||||||||||||||||||||||||  ||||||||||
seq2  GGTTTGAGGTGTGGTTGTTGTTGGTTTGTTTTTGAAACAGAGTCTGTCTA  300

seq1  TGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCAGGCTGGCCTCAA  302
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTAGCCCTGGCTGTCATGGAATTTGCTTTGTAGACCAGGCTGGCCTCAA  350

seq1  ATTCAGAGATTCACTTTCTTCTGTCTTCTGAGACCTAGTAGTCAAGTCTC  352
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  ATTCAGAGATTCACCTTCTTCTGTCTTCTGAGAACTAGTAGTCAAGTCTC  400

seq1  CTCGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACATTTTTCTA  402
      |||||||||||||||||| ||||||||||||| ||||||||||||  |||
seq2  CTCGCCCAGCAGTTTGAACTGTTGGATTAAAGCTTTTGGACATTTGCCTA  450

seq1  CTTTATCTTTTCTATTAAGATAGAAAGAAG-ATAGCCTATTATTCAAATT  451
      ||||||||||||| |||||||||||| ||| |||||||||||||||||||
seq2  CTTTATCTTTTCTGTTAAGATAGAAAAAAGAATAGCCTATTATTCAAATT  500

seq1  TACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAGATATAAA  501
      | | || ||||||| |||||   | |||| ||||||||||||||||||||
seq2  T-CCCAAAAAATTAATTTATTTGCCGTCACGGCTGGAATGCAGATATAAA  549

seq1  AAAATCAGATTGTTTGGAACTGAAAAAAAAAGATAAAAAGTTTAAGAAAC  551
      ||||||| | || |||||||| ||||| ||| |||||||| |||||||| 
seq2  AAAATCAAAATGGTTGGAACTTAAAAACAAAAATAAAAAGATTAAGAAAA  599

seq1  TCTTTAAAAATTTCCCTTTTCAAAACTGGCTGGCCATTCATACAGCTCAT  601
      ||||||| |||||| ||| ||| ||||| | ||||| || |  |||||||
seq2  TCTTTAATAATTTCTCTTCTCATAACTGACGGGCCACTCGTCTAGCTCAT  649

seq1  GAATCTTAAGGTTTAACAATATAAGTGAGTAGCCTCAGCTTATTTCAGTT  651
      ||||| |||||||  |||  ||||  |||||||| | |||| |  |||  
seq2  GAATCATAAGGTTGTACAGCATAATAGAGTAGCCGCCGCTTCTCACAGCA  699

seq1  TGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTATAGACCTGTACTTT  701
      |||| | || |||  | | | | ||||||||||| ||||||| | | || 
seq2  TGTCGTCAA-TTATATAATGATGAATCATGTGTCGATAGACCAGCAGTTC  748

seq1  TATCATCGTGTTATTTTTCCTTATAACTTAACTGTTAACATTAATAGACC  751
      |||||||||| |||| |||||| | |||| || | | |||| | ||||||
seq2  TATCATCGTGGTATTATTCCTTCT-ACTTCACAGCTGACATCATTAGACC  797

seq1  TCAAAAAAATAAATACATTTAAATCCGATGAGCACAAGATGTTCAGAATT  801
      ||| ||||   |||||||  | |||| || | |||| ||||||| | |||
seq2  TCATAAAA--TAATACATACATATCCTATCATCACACGATGTTCTGTATT  845

seq1  GTTAGCAAACGTCTTGCTTT-TGTTACTG  829
      |||||| || ||| |||||| ||||||||
seq2  GTTAGC-AAGGTC-TGCTTTGTGTTACTG  872

seq1: chr5_15138076_15139210
seq2: B6Ng01-103I10.g_67_1188 (reverse)

seq1  GTAACCTGTCTCTGTAATCTGCCCTCCCTCCCCAACTCTCTTAAGTCCTT  50
      |||||| |||||||| ||||| |||||||||||||||||| ||||||  |
seq2  GTAACC-GTCTCTGT-ATCTG-CCTCCCTCCCCAACTCTC-TAAGTC--T  44

seq1  TCTTTCCTCGCTGTCCTCATAAGAATTGGGCATATCCTATCTCTGACTCA  100
      || || |||||||| ||||| || || |||||||| ||||||||||||||
seq2  TC-TTGCTCGCTGT-CTCATTAG-ATAGGGCATAT-CTATCTCTGACTCA  90

seq1  TTCTGTTATCTCTCTGAATTATCACTTTGCCCCTCAATTAGATGTCACTT  150
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -TCTGTTATCTCTCTGAATTATCACTTTGCCCCTCAA-TAGATGTCACTT  138

seq1  ACAAACATGACTCTTCCTTCTATAAATGAACCTTACTTTCATTGTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACAAACATGACTCTTCCTTCTATAAATGAACCTTACTTTCAT--GTTGGG  186

seq1  ATTAAACGTGTGTAATTAGGGTATGTCTGCATTCTAGCCAAATCACATAG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCGTGTGTAATTAGGGTATGTCTGCATTCTAGCCAAATCACATAG  236

seq1  GTCTAAGTGGTCTATGGATGTGATTCCTTGCCAGAGACAATGTGTAC-TT  299
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTAAGTGGTCTATGGATGTGATTCCTTGCCAGAGACAATGTGTACTTT  286

seq1  TTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTG  336

seq1  GCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAAT  386

seq1  CTGCCTGCCTCTGCCTCCCCAGAGCTGGGATTAAAGGCGTGTGCCACCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCCCCAGAGCTGGGATTAAAGGCGTGTGCCACCAC  436

seq1  ACCCGGCCAATGTACTTTTTAAATGTGGAAAATGAGCTTTTTTCCCTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCCAATGTACTTTTTAAATGTGGAAAATGAGCTTTTTTCCCTGAC  486

seq1  CACAGCGAGATTGTTTTTATATGGTAGTAAAGCAAATTAACCACCTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGAGATTGTTTTTATATGGTAGTAAAGCAAATTAACCACCTTGAA  536

seq1  TTTCAAAGAGAATGTATAAGTGTACATGTTCTATATATCTGTGTTCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGAGAATGTATAAGTGTACATGTTCTATATATCTGTGTTCATTT  586

seq1  CTTACAAGAGAAGCAGTTCTGTGTTCAATTTATACCTACTGCTTTCTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGAGAAGCAGTTCTGTGTTCAATTTATACCTACTGCTTTCTTCC  636

seq1  TGCTGTGAAATGGCAACTGTTGATAGATCATTGTGTTTTAAGATGTAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAAATGGCAACTGTTGATAGATCATTGTGTTTTAAGATGTAATG  686

seq1  GGTAGGGGACTATATTTTTATTTTACTTGGCATTAATCTGTAAAATGTCA  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTAGGGGACTATATTTTGATTTTACTTGGCATTAATCTGTAAAATGTCA  736

seq1  CTTAGACATATATGATAGCAACACTTGAAGTACTATGTAGCTTCTGTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACATATATGATAGCAACACTTGAAGTACTATGTAGCTTCTGTATC  786

seq1  TCCGTATATGATTGCATGGCCTAATATCCTCTTGTACCTGGACTCCTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATATGATTGCATGGCCTAATATCCTCTTGTACCTGGACTCCTCAT  836

seq1  AACTGTATTTAAATTAACAACACTCACAGATCCTAAAGTTACTGAAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTTAAATTAACAACACTCACAGATCCTAAAGTTACTGAAAATG  886

seq1  TAAATTTCTCTTTGCTTTCTGATTTGAAAATTCAGCTAACACCTAAGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTCTTTGCTTTCTGATTTGAAAATTCAGCTAACACCTAAGACT  936

seq1  TGTACTATATGGATTTTTCTTGTTATGTGTCCTGTTGGAAATTCCTGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATATGGATTTTTCTTGTTATGTGTCCTGTTGGAAATTCCTGAAA  986

seq1  TTGTTAGCACCATCATAGAATTTCCAGAGTACTTGAAGTTGTATTTGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCACCATCATAGAATTTCCAGAGTACTTGAAGTTGTATTTGCAT  1036

seq1  AGTTGGACATAAAAGAATTTGTAGACAATGATTCTCTCTTTTTTAATAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGACATAAAAGAATTTGTAGACAATGATTCTCTCTTTTTTAATAAA  1086

seq1  ATGAAAAATTTGAAAAATTTAATTCCATGTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTTGAAAAATTTAATTCCATGTGAATTC  1122