BAC Information

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BAC

Clone NameB6Ng01-103J05
Chromosome5 (Build37)
Map Location 142,805,777 - 142,959,686
singlet/doubletdoublet
Overlap geneFoxk1, C330006K01Rik
Upstream geneSdk1, LOC666727
Downstream geneD930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103J05.bB6Ng01-103J05.g
ACCDH912119DH912120
length1,024554
definitionDH912119|Mus musculus domesticus DNA, BAC clone: B6Ng01-103J05, 5' end.DH912120|Mus musculus domesticus DNA, BAC clone: B6Ng01-103J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,805,777 - 142,806,735)(142,959,127 - 142,959,686)
sequence
ggttatttcaagtcttccccagtcatttctactggttgactgcaagtgcc
tatttgaggaagttaccttcctgctcttgtttgttcttgtgcttagaagc
ctcacccaaggggacactctattctgctctgctccactagggactctcgt
tcaggaactccagaaggctgcttcaatggcttccccaggcaatttctgct
ggatgtttttaagcctccagtttgatcctgttgccttttgtttgctatca
cttgggctactctggtatctctgtgggatgttataggcgcctgatttgat
gttttgcaatctaccggctgcttctatctgctccttgttcttcaactctt
acttttgcttgcttaataaattacttaataaatttatccgttcaaaactg
aaaacattattgtcatacataattttctgagtcacacaaaacatgtgttt
caatttactgtacgttccagtttcattctgttgctgtgacaacggccata
accaaaaacagcctaggggaaagaaaccatttacctaccttacatttcca
gatcacagatcatcattcagagaagtcagggcaggaaatcaagcaacttc
actatgggattctaggatctactactcagtcacacccgcagcccctcatt
gggggattctaggcaggttctctaccactgagtcacacctcagcccctca
ctgggggattctaggcaggggctctaccactgagtcaccccagcccctca
ctgggggattctaggcaggggctctaccactgagccacaccccagcccct
cactggggaattctaggcaggggctctaccactgagccacatttccagcc
catcactgggggattctaggcaggggctctaccactgagccacgccccca
gcccctccctgggggattctaagcagggactctaccactgagccacgccc
ccagcccctcactggggaatctaagcaggggctctaccactgagccacgc
ccccagccctcactgggggattct
tgggcccacacgtgaatccctgtgcccatctccattttcaatcgcattgt
acagtttctcctccaaagtaaggggtctgcaggcctggagaaggcgaggt
gaccaagttcatgtctccttgggcctgaggcagccttgtgcctctctccc
tgctgagatgacctccattcttctctattgtcactgatcacaaaagtagg
tggttgaacactaagctgggggcctaagctcttcttctctgacccacatc
cctttacacatccctggtaggaagccaggggctggtgtgctgtgattgtg
gcagtcacatgcccacacggagtatgaacaaatgtgaccatgctgtgtgc
atctttagcagggttagcagctctgtccatgtgctcagttgcacagactt
catcttaaaagagttcagtgtgtgtgtgtgtctgtgcctatgtgtgtatc
tgtgtttgtgtgtgctgcgtctctctctcttgtgtctgtgtgtctgcctg
tgtatctctgtgtgtgtctctttctgtgtgtatgtgtgtgtgggggtgtg
tgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_142805777_142806735
seq2: B6Ng01-103J05.b_58_1017

seq1  GGTTATTTCAAGTCTTCCCCAGTCATTTCTACTGGTTGACTGCAAGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTCAAGTCTTCCCCAGTCATTTCTACTGGTTGACTGCAAGTGCC  50

seq1  TATTTGAGGAAGTTACCTTCCTGCTCTTGTTTGTTCTTGTGCTTAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGGAAGTTACCTTCCTGCTCTTGTTTGTTCTTGTGCTTAGAAGC  100

seq1  CTCACCCAAGGGGACACTCTATTCTGCTCTGCTCCACTAGGGACTCTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCAAGGGGACACTCTATTCTGCTCTGCTCCACTAGGGACTCTCGT  150

seq1  TCAGGAACTCCAGAAGGCTGCTTCAATGGCTTCCCCAGGCAATTTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACTCCAGAAGGCTGCTTCAATGGCTTCCCCAGGCAATTTCTGCT  200

seq1  GGATGTTTTTAAGCCTCCAGTTTGATCCTGTTGCCTTTTGTTTGCTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTTAAGCCTCCAGTTTGATCCTGTTGCCTTTTGTTTGCTATCA  250

seq1  CTTGGGCTACTCTGGTATCTCTGTGGGATGTTATAGGCGCCTGATTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTACTCTGGTATCTCTGTGGGATGTTATAGGCGCCTGATTTGAT  300

seq1  GTTTTGCAATCTACCGGCTGCTTCTATCTGCTCCTTGTTCTTCAACTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAATCTACCGGCTGCTTCTATCTGCTCCTTGTTCTTCAACTCTT  350

seq1  ACTTTTGCTTGCTTAATAAATTACTTAATAAATTTATCCGTTCAAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCTTGCTTAATAAATTACTTAATAAATTTATCCGTTCAAAACTG  400

seq1  AAAACATTATTGTCATACATAATTTTCTGAGTCACACAAAACATGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTATTGTCATACATAATTTTCTGAGTCACACAAAACATGTGTTT  450

seq1  CAATTTACTGTACGTTCCAGTTTCATTCTGTTGCTGTGACAACGGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACTGTACGTTCCAGTTTCATTCTGTTGCTGTGACAACGGCCATA  500

seq1  ACCAAAAACAGCCTAGGGGAAAGAAACCATTTACCTACCTTACATTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAACAGCCTAGGGGAAAGAAACCATTTACCTACCTTACATTTCCA  550

seq1  GATCACAGATCATCATTCAGAGAAGTCAGGGCAGGAAATCAAGCAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGATCATCATTCAGAGAAGTCAGGGCAGGAAATCAAGCAACTTC  600

seq1  ACTATGGGATTCTAGGATCTACTACTCAGTCACACCCGCAGCCCCTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGGATTCTAGGATCTACTACTCAGTCACACCCGCAGCCCCTCATT  650

seq1  GGGGGATTCTAGGCAGGTTCTCTACCACTGAGTCACACCTCAGCCCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATTCTAGGCAGGTTCTCTACCACTGAGTCACACCTCAGCCCCTCA  700

seq1  CTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGTCACCCCAGCCCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGTCACCCCAGCCCCTCA  750

seq1  CTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACACCCCAGCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACACCCCAGCCCCT  800

seq1  CACTGGGGAATTCTAGGCAGGGGCTCTACCACTGAGCCACA-TTCCAGCC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACTGGGGAATTCTAGGCAGGGGCTCTACCACTGAGCCACATTTCCAGCC  850

seq1  CATCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCA  900

seq1  GCCCCTCCCTGGGGGATTCTAGGCAGGGACTCTACCACTGAGCCACGCCC  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCCCTCCCTGGGGGATTCTAAGCAGGGACTCTACCACTGAGCCACGCCC  950

seq1  CCAGCCCCTC  959
      ||||||||||
seq2  CCAGCCCCTC  960

seq1: chr5_142959127_142959686
seq2: B6Ng01-103J05.g_71_630 (reverse)

seq1  TACACACACCCCCACACACACATACACACAGAAAGAGACACACACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCCCCACACACACATACACACAGAAAGAGACACACACAGAGA  50

seq1  TACACAGGCAGACACACAGACACAAGAGAGAGAGACGCAGCACACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGCAGACACACAGACACAAGAGAGAGAGACGCAGCACACACAAA  100

seq1  CACAGATACACACATAGGCACAGACACACACACACACTGAACTCTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATACACACATAGGCACAGACACACACACACACTGAACTCTTTTAA  150

seq1  GATGAAGTCTGTGCAACTGAGCACATGGACAGAGCTGCTAACCCTGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTCTGTGCAACTGAGCACATGGACAGAGCTGCTAACCCTGCTAA  200

seq1  AGATGCACACAGCATGGTCACATTTGTTCATACTCCGTGTGGGCATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACACAGCATGGTCACATTTGTTCATACTCCGTGTGGGCATGTGA  250

seq1  CTGCCACAATCACAGCACACCAGCCCCTGGCTTCCTACCAGGGATGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAATCACAGCACACCAGCCCCTGGCTTCCTACCAGGGATGTGTA  300

seq1  AAGGGATGTGGGTCAGAGAAGAAGAGCTTAGGCCCCCAGCTTAGTGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGTGGGTCAGAGAAGAAGAGCTTAGGCCCCCAGCTTAGTGTTCA  350

seq1  ACCACCTACTTTTGTGATCAGTGACAATAGAGAAGAATGGAGGTCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTACTTTTGTGATCAGTGACAATAGAGAAGAATGGAGGTCATCTC  400

seq1  AGCAGGGAGAGAGGCACAAGGCTGCCTCAGGCCCAAGGAGACATGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGAGAGGCACAAGGCTGCCTCAGGCCCAAGGAGACATGAACTT  450

seq1  GGTCACCTCGCCTTCTCCAGGCCTGCAGACCCCTTACTTTGGAGGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTCGCCTTCTCCAGGCCTGCAGACCCCTTACTTTGGAGGAGAAA  500

seq1  CTGTACAATGCGATTGAAAATGGAGATGGGCACAGGGATTCACGTGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAATGCGATTGAAAATGGAGATGGGCACAGGGATTCACGTGTGGG  550

seq1  CCCAGAATTC  560
      ||||||||||
seq2  CCCAGAATTC  560