BAC Information

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BAC

Clone NameB6Ng01-103K08
Chromosome15 (Build37)5 (Build37)
Map Location 14,357,471 - 14,358,64347,840,362 - 47,840,397
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103K08.bB6Ng01-103K08.g
ACCDH912171DH912172
length1,163742
definitionDH912171|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K08, 5' end.DH912172|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,357,471 - 14,358,643)(47,840,362 - 47,840,397)
sequence
gaattctctagtccattaccatttaccttgacctgaattgcacagtttct
atgtgaagcttttaatagactttaaggtgtcttcagccaatatggaagag
aaccaaagtataagagttactatttcagaaacctaggtgagacttaacaa
ctcaacatttaaggtgggtaaagtggttgtttttaagcctttccacttga
ttgcttgcaattactgttagcatagtgtgttagaaatacttgactgataa
atcattggtgataaaattaaagatatactggctagtgaaagcaaacaagt
gccttacaaatttatgttacaattaacatatcatttttctttaacagtat
acaacttaagtagtaaatataattagttatattgagaagcttgtgatttg
gttgctataaaagaccctccttatgtggtttctaaacaatcaatgtattt
tttcaggatttggaatctgagcatctctaatttgcatggttgcattttgg
taaggttcttctgccaactggtagaatccagataatcattgcttacattg
attgctcttcctagttcactgaaataaaaatgcacaacagaaatcacctc
ggagaggaagaacttgtttagttcatggcgtcaaaggtgcagacattgtc
ctttcaggtgcatgtccttacacagaggatatgacagcagacatgtgcag
cacaagctagtaacacaagggcagaataaaaaagaggggcaagaaagaca
cgtcctgctgttaaggcagggattagacaacaacctagtgattcactttc
tccaggtaaattccatccccacccccaaagcttccagaactttttcaaat
tgctaccaacctgaaaccaaacacttaacaccaaaactttcagcaaatga
tacataactcaagcaataatattgtgtctttataatctataggtataatc
actcaccttaggcattttgtatggcagtcctaatctttctgagagtttac
ctttatgaaataataattactccccctcatcatacttcttattatataac
atgttgtcaagttcaactattaaaatttattacagtagttgtggtagcag
aaaatagagcactgctgataagatgtaaatatcagtggttggttggtttt
gttgttgttgttt
gaattcctgatctttccaagacttttgtcatgaataggtgttggatcttg
tcgaatgctttttctgcatctaacaagatgatcatgttgtttttgtcttt
gagtttgtttatataatgaattacatttagggattttcatatgttaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatagtt
ttaatgtgtccttggattcagttagcgagaattttattgagtatttttgc
atcaatattcataagggaaattggtctgaagttctctatctctgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagttccctctacttctattttgtggaatagtttgtgcagaactgg
aattagatcttctttgaaggtctggtagaactctgcactaaactcatctg
gtcctggggtttttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagattgttaacttgatcctgatttaactt
tggtagctggtatctgtctagaaattttgtccatttcgtacaggttttcc
agttttgttgagtatagccttttgtagaaggatttgatggtgttttggat
ttcttcaggatctgttgttatgtctccgtttcatagaaagaaatgtggta
ccatagatgctaacatcagcaacagaatacaagagatggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_14357471_14358643
seq2: B6Ng01-103K08.b_41_1203

seq1  GAATTCTCTAGTCCATTACCATTTACCTTGACCTGAATTGCACAGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTCCATTACCATTTACCTTGACCTGAATTGCACAGTTTCT  50

seq1  ATGTGAAGCTTTTAATAGACTTTAAGGTGTCTTCAGCCAATATGGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGCTTTTAATAGACTTTAAGGTGTCTTCAGCCAATATGGAAGAG  100

seq1  AACCAAAGTATAAGAGTTACTATTTCAGAAACCTAGGTGAGACTTAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTATAAGAGTTACTATTTCAGAAACCTAGGTGAGACTTAACAA  150

seq1  CTCAACATTTAAGGTGGGTAAAGTGGTTGTTTTTAAGCCTTTCCACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATTTAAGGTGGGTAAAGTGGTTGTTTTTAAGCCTTTCCACTTGA  200

seq1  TTGCTTGCAATTACTGTTAGCATAGTGTGTTAGAAATACTTGACTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCAATTACTGTTAGCATAGTGTGTTAGAAATACTTGACTGATAA  250

seq1  ATCATTGGTGATAAAATTAAAGATATACTGGCTAGTGAAAGCAAACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGTGATAAAATTAAAGATATACTGGCTAGTGAAAGCAAACAAGT  300

seq1  GCCTTACAAATTTATGTTACAATTAACATATCATTTTTCTTTAACAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAAATTTATGTTACAATTAACATATCATTTTTCTTTAACAGTAT  350

seq1  ACAACTTAAGTAGTAAATATAATTAGTTATATTGAGAAGCTTGTGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAAGTAGTAAATATAATTAGTTATATTGAGAAGCTTGTGATTTG  400

seq1  GTTGCTATAAAAGACCCTCCTTATGTGGTTTCTAAACAATCAATGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATAAAAGACCCTCCTTATGTGGTTTCTAAACAATCAATGTATTT  450

seq1  TTTCAGGATTTGGAATCTGAGCATCTCTAATTTGCATGGTTGCATTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATTTGGAATCTGAGCATCTCTAATTTGCATGGTTGCATTTTGG  500

seq1  TAAGGTTCTTCTGCCAACTGGTAGAATCCAGATAATCATTGCTTACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCTTCTGCCAACTGGTAGAATCCAGATAATCATTGCTTACATTG  550

seq1  ATTGCTCTTCCTAGTTCACTGAAATAAAAATGCACAACAGAAATCACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTCCTAGTTCACTGAAATAAAAATGCACAACAGAAATCACCTC  600

seq1  GGAGAGGAAGAACTTGTTTAGTTCATGGCGTCAAAGGTGCAGACATTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAGAACTTGTTTAGTTCATGGCGTCAAAGGTGCAGACATTGTC  650

seq1  CTTTCAGGTGCATGTCCTTACACAGAGGATATGACAGCAGACATGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGTGCATGTCCTTACACAGAGGATATGACAGCAGACATGTGCAG  700

seq1  CACAAGCTAGTAACACAAGGGCAGAATAAAAAAGAGGGGCAAGAAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTAGTAACACAAGGGCAGAATAAAAAAGAGGGGCAAGAAAGACA  750

seq1  CGTCCTGCTGTTAAGGCAGGGATTAGACAACAACCTAGTGATTCACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGCTGTTAAGGCAGGGATTAGACAACAACCTAGTGATTCACTTTC  800

seq1  TCCAGGTAAATTCCATCCCCACCCCCAAAGCTTCCAGAACTTTTTCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTAAATTCCATCCCCACCCCCAAAGCTTCCAGAACTTTTTCAAAT  850

seq1  TGCTACCAACCTGAAACCAAACACTTAACACCAAAACTTTCAGCAAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCAACCTGAAACCAAACACTTAACACCAAAACTTTCAGCAAATGA  900

seq1  TACATAACTCAAGCAATAATATTGTGTCTTTATAATCTATAGGATATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TACATAACTCAAGCAATAATATTGTGTCTTTATAATCTATAGG-TA-TAA  948

seq1  TCACTTACCTTAGGCATTTTGTATGGCAGTCCTAATCTTTCTGAGAGATT  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCACTCACCTTAGGCATTTTGTATGGCAGTCCTAATCTTTCTGAGAG-TT  997

seq1  TACCTTTATGAAATAATAATTACTCCCCCCTTCATTCCATACCTTCTTAT  1050
      |||||||||||||||||||||||||||||  ||||  |||| ||||||||
seq2  TACCTTTATGAAATAATAATTACTCCCCC--TCAT--CATA-CTTCTTAT  1042

seq1  TATATAACATTGTTGTCAAAGTTTCAAACTA-TAAAATATATTACAGTAG  1099
      ||||||||| ||||||| |||||   ||||| |||||| |||||||||||
seq2  TATATAACA-TGTTGTC-AAGTT--CAACTATTAAAATTTATTACAGTAG  1088

seq1  TTGTGGTAGCAGAAAATAGAGCACTGCTGATAAGGATGTAAATATCA---  1146
      ||||||||||||||||||||||||||||||||| |||||||||||||   
seq2  TTGTGGTAGCAGAAAATAGAGCACTGCTGATAA-GATGTAAATATCAGTG  1137

seq1  GTTGGTTTGTTTTGTTTTTGTTTGTTT  1173
      ||||||| |||||||| ||| ||||||
seq2  GTTGGTTGGTTTTGTTGTTG-TTGTTT  1163

seq1: chr5_47840362_47840397
seq2: B6Ng01-103K08.g_766_801 (reverse)

seq1  CTCTTGTATTCTGTTGCTGATGCTCGCATCTATGGT  36
      |||||||||||||||||||||| | |||||||||||
seq2  CTCTTGTATTCTGTTGCTGATGTTAGCATCTATGGT  36