BAC Information

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BAC

Clone NameB6Ng01-103O06
Chromosome5 (Build37)
Map Location 9,827,696 - 9,828,741
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103O06.bB6Ng01-103O06.g
ACCDH912346DH912347
length1,2261,103
definitionDH912346|Mus musculus domesticus DNA, BAC clone: B6Ng01-103O06, 5' end.DH912347|Mus musculus domesticus DNA, BAC clone: B6Ng01-103O06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatattttgatctctgggcagttaggaagagagtattgtccaca
ccaggcaaagcttaaacataggaagcttcaaagcctacctacacagtggc
acacttcctccaacaaggccacacctcctccaataaggccacacccttta
aagggggcactatgtatgggccaaacattcaaacacatgaatctatgggg
accatatctaatcactacattacattccctggcccaaataagctggtaga
cataacgtaatgcaaattcattcagttcaacatcaaaaatctccatagtc
tatcacagtctcaacaatgtttaagtccaagttcaaagtctcttctgaga
ttcatgtaagctcttaattgaaatcccctataaaatcaaatttaaaaacc
aattcatatactttcagcatcacaagatatatgttaccattcgaaaccat
agtgaggaaatacaggagcaagaccaaaaagcaaactctaacctttgcat
cttcatgtctgatgtccaactccttttagctttgttgatggcaacccaat
tctttctcttgagctgatgctctcccagttagcagctttcctccccaggt
atcctatggctcatgcatctctaacatcttgaagttttcaacgaaccttc
attttcacagtttcttgttacagtgtctggatccacaaatgatcttctgg
gctactctaaagggtttgggtcgcttctcaagctctgtcctttgtagcat
cctaggctccagctgactcctctccactgctattgctattcttggtgaac
atcccatgatactggcatctccaatatgttgggctctatcatagtaataa
tgcttcattttcatcaacatcttttcataggctcacttcatggtgccaag
ccatgatccctttatatgatccctttagcctaggtctccaactgccactg
agacagcaccttcactaatggtttttcctggctcttgcaatgccagcctc
agcttctgcccataaccccctcataccttgaaagccagtacactaagtga
ttcttactcagttgcaacaaagttatcactgaacacagcagttttgttgt
tgttgttgtggttcctctcgaaatacttccaaagaatcacctcaagaagt
atccttcttcctatgttattcatcgctcgtcatttttccatgaaagctat
aaccacaaatactccctggactcaag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatatcctgagta
atttaagaaaaaaaaaaaaaaacctgactaagccttaaggagccagtaac
taagtactttaccttagcctctgcctccaggttccagtcctgagttcttg
ccctgacttctttcattgataaattttgacctgagagttaaaagactgaa
taacttctcctaggctacttatagtaatggaattttatcacagcaaaaga
aaccctatggcaatggcaaagtgtttctatagtttaagttttatgagtga
tgtcatttgagattaggcagtgaacataaatgtcctagcataagcagaac
tgaaattggttactgcataaaattctatacttttatcatgaaagaattaa
tttgattattaggttaaaatattttatacatctacagtgtctggtacagt
gataggtatttagggcataaacatatcatatacattctctatttgattaa
tgtgttgcctcagaagagaatataagagtatgtggtctggtgtctagatt
agaaaacactgactgcctagtaagcagtcataggatggggtgactttgga
aaagtgactgagagctagtttctttgtggatgtgttatttaagacctaag
ttcagatgatagagatgaagtttggtgcaaggaaagtatacagcttgtgc
aaaggttcagagttcagagtttcccatggagtgtctgacaaaggctgatt
tacttggctctctgagaagaggaacgcttttctttgaatgctacagatgc
agc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9827696_9828741
seq2: B6Ng01-103O06.g_128_1169

seq1  TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA  50

seq1  CCAGTGAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG  100

seq1  AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC  150

seq1  TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC  200

seq1  ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA  250

seq1  AGAAGCCCCAACTGGTAAGAAGGACACATATCCTGAGTAATTTAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCCAACTGGTAAGAAGGACACATATCCTGAGTAATTTAAGAAAA  300

seq1  AAAAAAAAAAACCTGACTAAGCCTTAAGGAGCCAGTAACTAAGTACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCTGACTAAGCCTTAAGGAGCCAGTAACTAAGTACTTTA  350

seq1  CCTTAGCCTCTGCCTCCAGGTTCCAGTCCTGAGTTCTTGCCCTGACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCTCTGCCTCCAGGTTCCAGTCCTGAGTTCTTGCCCTGACTTCT  400

seq1  TTCATTGATAAATTTTGACCTGAGAGTTAAAAGACTGAATAACTTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATAAATTTTGACCTGAGAGTTAAAAGACTGAATAACTTCTCCT  450

seq1  AGGCTACTTATAGTAATGGAATTTTATCACAGCAAAAGAAACCCTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTTATAGTAATGGAATTTTATCACAGCAAAAGAAACCCTATGGC  500

seq1  AATGGCAAAGTGTTTCTATAGTTTAAGTTTTATGAGTGATGTCATTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAAGTGTTTCTATAGTTTAAGTTTTATGAGTGATGTCATTTGAG  550

seq1  ATTAGGCAGTGAACATAAATGTCCTAGCATAAGCAGAACTGAAATTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAGTGAACATAAATGTCCTAGCATAAGCAGAACTGAAATTGGTT  600

seq1  ACTGCATAAAATTCTATACTTTTATCATGAAAGAATTAATTTGATTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAAAATTCTATACTTTTATCATGAAAGAATTAATTTGATTATTA  650

seq1  GGTTAAAATATTTTATACATCTACAGTGTCAGGTACAGTGATAGGTATTT  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTTAAAATATTTTATACATCTACAGTGTCTGGTACAGTGATAGGTATTT  700

seq1  AGGGCATAAACATATCATATACATTCTCTATTTGATTAATGTGTTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATAAACATATCATATACATTCTCTATTTGATTAATGTGTTGCCTC  750

seq1  AGAAGAGAATATAAGAGTATGTGGTCTGGTGTCTAGATTAG-AAACACTG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAAGAGAATATAAGAGTATGTGGTCTGGTGTCTAGATTAGAAAACACTG  800

seq1  ACTGCCTAGTAAGCAGTCATAGGATGGGGTGACTTTGGAAAAGTGACTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAGTAAGCAGTCATAGGATGGGGTGACTTTGGAAAAGTGACTGA  850

seq1  GAGCTAGTTTCTTTGTGGATGTGTTATTTAAGACCTAAGTTCAGATGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGTTTCTTTGTGGATGTGTTATTTAAGACCTAAGTTCAGATGATA  900

seq1  GAGATGAAGTTTGGTGCAAGGAAAGTATACAGCTTGTGCAAAGGTTCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAGTTTGGTGCAAGGAAAGTATACAGCTTGTGCAAAGGTTCAGA  950

seq1  GTCCAGAGTTTCCCAATGAGTGTCTGACAACAGGCTGATTTAC-TGGCTC  998
      || ||||||||||||  ||||||||||||| |||||||||||| ||||||
seq2  GTTCAGAGTTTCCCATGGAGTGTCTGACAA-AGGCTGATTTACTTGGCTC  999

seq1  TCTGAGGAAAGAGGGAACAGCTTTCTTTG-ATGCCTTACAGATGGCAGC  1046
      ||||||  |||| |||||   |||||||| ||||  ||||||| |||||
seq2  TCTGAG--AAGA-GGAACGCTTTTCTTTGAATGC--TACAGAT-GCAGC  1042