BAC Information

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BAC

Clone NameB6Ng01-104B09
Chromosome5 (Build37)
Map Location 71,643,549 - 71,761,049
singlet/doubletdoublet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104B09.bB6Ng01-104B09.g
ACCDH912487DH912488
length1,2421,070
definitionDH912487|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B09, 5' end.DH912488|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,643,549 - 71,644,804)(71,759,959 - 71,761,049)
sequence
gaattctaaaaagaaggatttttttttcaaagatcaagtgaccatagatg
tgtgggttcatttctttgtttgtttgttttttatttattttttacaacaa
ttttattagatattttcttcatttacatttcaaatgtcatcctgaaaatt
ccctatatccccccccacacacactcaccaacccactcactcccacttcc
tagccctggcatttccctgtactggggcatacaatctttgcaagatgaag
ggcctctcctcccaatgatggctgactaggccattctctgctacatatgc
aactaaagacacagctctggagagtactgtttagttcatattgttgttcc
tcctatatggttgcagacccctttagctccttgggtactttctctatgct
cctccattgggggccctgtgttccatccaatagatgactgtgagcattca
cttctgtatttgccaggcactggtatagcctcacaggagacagctatatc
agcgtcctttcagcaaaataacagaaggctattaatcgatataaaatagt
gttcaacatcatcagccattgggcaactgaaaatgaaaacaacctttagt
ttgcctctcactccagtcacaatgactgtcatcacacagtcatagaatca
gaaataccaaacaggaaatgaggaaagaataactgttattcactgttggt
aggaggggcaactggcacaatcacaatgaaaatctatgtgaagattcctc
caaaaatgggaatagaacttccatatagcctagtaatttatttcacaaca
aacatatacccagaggatatcatactactcaggtatttattgccacttta
ctcacaatagctagggatggaatcagtctagacaaatagatcacgaaatt
gaggtggtttgtgtacacaacagagtttaatttagctataaagacaatga
agtttgcaaataaatcaatggaactgggaaactcagcagagtgaggtaac
cagacaaaaaaagaccaacaacacatgttattttctcaaaggcgaatcac
atatttaaatatctagttgaggttttccatgtagatttctatagatgtca
gaaatctaagaagaagtcaacggatggttatgctcaagggaggtgttgga
tggtaatcactgggttattgaaagaaattgaaacatggcgaatgaaggca
tgtagcttgaaggtattaagctaggcatggcgggggctattc
gaattcttgacctttaaacatggttttcagtgcactgaaggtttatatac
gatgctgagtggcaatggagaccgtttgagacagtcatataagggcaatg
caagagtatctgggaggacctgaagagaggaagtaatggaggagagaaag
taatgtaattacatttcaatttgaaatatattttaaaggaaattttccat
aaataccctctttacaaatatatctcctctcctcctaatccagatccttt
catttaaaatttttttttttgtatattaacaattcttgcacggataatta
gacattaacacacttgaaggtcactgggatgtaccccattgtgataattt
gtagcctgtaaaagacagacctaaaacaggaggacaaatgctatgtttaa
aaaaagaagaagaaagaaaagaagagaggagaggagagaagaggagagga
gagagaaaagaaaagaaagaaaaaaagaagagacgagaaaagagaagaga
agagaagagtagagaagagaagagaagagaagagaagagaagagaagaga
agaggatctgcatcatagcttttgtattgggtgaagaaataaggttctaa
gttggcttggtagtcattaatataaaatcatctaaaatgtataagattat
tatttagctggaggctttctggtaaagagtagatcatattattttccctc
caatgagcattattccaaatgggcatgtgaatctcttgggcaggaaatgg
cctcaggaaaagcagtctgttaagaatagtatactgactgccttcaatgt
ttggtggagcaacactgccctgtaaaagtactcagtttactctgaactaa
atcttacctgtcttttttgttgttgttgtttcttcttttcatgataattt
atttatttacatttcaaattttatccccttccaggtttcccttcacaagc
tctctatcccttcctactcccgtgcttctatggagttactaaatagtaaa
taaggatctgaaatcagcgaaggtctaattggctcatcactctgcctcaa
tgcctacattgctgtcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71643549_71644804
seq2: B6Ng01-104B09.b_44_1285

seq1  GAATTCTAAAAAGAAGGATTTTTTTTTCAAAGATCAAGTGACCATAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAAGAAGGATTTTTTTTTCAAAGATCAAGTGACCATAGATG  50

seq1  TGTGGGTTCATTTCTTTGTTTGTTTGTTTTTTATTTATTTTTTACAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTCATTTCTTTGTTTGTTTGTTTTTTATTTATTTTTTACAACAA  100

seq1  TTTTATTAGATATTTTCTTCATTTACATTTCAAATGTCATCCTGAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGATATTTTCTTCATTTACATTTCAAATGTCATCCTGAAAATT  150

seq1  CCCTATATCCCCCCCCACACACACTCACCAACCCACTCACTCCCACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATCCCCCCCCACACACACTCACCAACCCACTCACTCCCACTTCC  200

seq1  TAGCCCTGGCATTTCCCTGTACTGGGGCATACAATCTTTGCAAGATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCATTTCCCTGTACTGGGGCATACAATCTTTGCAAGATGAAG  250

seq1  GGCCTCTCCTCCCAATGATGGCTGACTAGGCCATTCTCTGCTACATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCCTCCCAATGATGGCTGACTAGGCCATTCTCTGCTACATATGC  300

seq1  AACTAAAGACACAGCTCTGGAGAGTACTGTTTAGTTCATATTGTTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGACACAGCTCTGGAGAGTACTGTTTAGTTCATATTGTTGTTCC  350

seq1  TCCTATATGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTATGCT  400

seq1  CCTCCATTGGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTGGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATTCA  450

seq1  CTTCTGTATTTGCCAGGCACTGGTATAGCCTCACAGGAGACAGCTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATTTGCCAGGCACTGGTATAGCCTCACAGGAGACAGCTATATC  500

seq1  AGCGTCCTTTCAGCAAAATAACAGAAGGCTATTAATCGATATAAAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCCTTTCAGCAAAATAACAGAAGGCTATTAATCGATATAAAATAGT  550

seq1  GTTCAACATCATCAGCCATTGGGCAACTGAAAATGAAAACAACCTTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCATCAGCCATTGGGCAACTGAAAATGAAAACAACCTTTAGT  600

seq1  TTGCCTCTCACTCCAGTCACAATGACTGTCATCACACAGTCATAGAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTCACTCCAGTCACAATGACTGTCATCACACAGTCATAGAATCA  650

seq1  GAAATACCAAACAGGAAATGAGGAAAGAATAACTGTTATTCACTGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCAAACAGGAAATGAGGAAAGAATAACTGTTATTCACTGTTGGT  700

seq1  AGGAGGGGCAACTGGCACAATCACAATGAAAATCTATGTGAAGATTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCAACTGGCACAATCACAATGAAAATCTATGTGAAGATTCCTC  750

seq1  CAAAAATGGGAATAGAACTTCCATATAGCCTAGTAATTTATTTCACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGGAATAGAACTTCCATATAGCCTAGTAATTTATTTCACAACA  800

seq1  AACATATACCCAGAGGATATCATACTACTCAGGTATTTATTGCCACTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACCCAGAGGATATCATACTACTCAGGTATTTATTGCCACTTTA  850

seq1  CTCACAATAGCTAGGGATGGAATCAGTCTAGACAAATAGATCACGAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATAGCTAGGGATGGAATCAGTCTAGACAAATAGATCACGAAATT  900

seq1  GAGGTGGTTTGTGTACACAACAGAGTTTAATTTAGCTATAAAGACAATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTTTGTGTACACAACAGAGTTTAATTTAGCTATAAAGACAATGA  950

seq1  AGTTTGCAAATAAATCAATGGAACTGGAAAACTCAGGCAGAGTGAGGTAA  1000
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  AGTTTGCAAATAAATCAATGGAACTGGGAAACTCA-GCAGAGTGAGGTAA  999

seq1  CCAGACAAAAAAAGACCAACAACACATGTTA-TTTCTCAAAGGCGAATCA  1049
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGACAAAAAAAGACCAACAACACATGTTATTTTCTCAAAGGCGAATCA  1049

seq1  CATATTTAAATATCTAGTTTGAGGTTTTCAATGTAGAATTTCTATAGATG  1099
      ||||||||||||||||| ||||||||||| |||||| |||||||||||||
seq2  CATATTTAAATATCTAG-TTGAGGTTTTCCATGTAG-ATTTCTATAGATG  1097

seq1  TCAGAAATCTAAGAAGAGTTCAACGGGATGGTTATGCCTCAAGGGA-GTG  1148
      |||||||||||||||||  ||||| ||||||||||| ||||||||| |||
seq2  TCAGAAATCTAAGAAGAAGTCAAC-GGATGGTTATG-CTCAAGGGAGGTG  1145

seq1  TT-GATTGTAGATCACT-GGTTATATGAAAGAAGAAAATGAGAACATGGC  1196
      || ||| ||| |||||| |||||| |||   |||||| ||| ||||||||
seq2  TTGGATGGTA-ATCACTGGGTTAT-TGA---AAGAAATTGA-AACATGGC  1189

seq1  AGTAGAAAGGCATGTGTAAGGCTGGAGGGTATATAGCCTAGGTCATGGCG  1246
       | |  |||||||||     ||| || ||||| ||  ||||| |||||||
seq2  -GAATGAAGGCATGT----AGCTTGAAGGTAT-TAAGCTAGG-CATGGCG  1232

seq1  GGGGCTATTC  1256
      ||||||||||
seq2  GGGGCTATTC  1242

seq1: chr5_71759959_71761049
seq2: B6Ng01-104B09.g_67_1136 (reverse)

seq1  TCAAGACAGGGGAATGCTAGGGCATTGAGGCAGGAGTGGATGGGCAGATA  50
      ||||||||  | |||| || |||||||||||| |||| |||| ||  || 
seq2  TCAAGACA--GCAATG-TA-GGCATTGAGGCA-GAGT-GATGAGCCAAT-  43

seq1  TAGAACTTCTGCTTGATTTCAGATTCTTATTTACCTTATTTAGTAAACTC  100
      |||| |||| || ||||||||||| |||||||||  |||||||| |||||
seq2  TAGACCTTC-GC-TGATTTCAGATCCTTATTTAC--TATTTAGT-AACTC  88

seq1  TCATAGAGGCACGGGGAGTAGGAAGGGGATAGAGAGCTTGTGGAGGGGAA  150
       |||||| |||| ||||||||||| |||||||||||||||| || |||||
seq2  -CATAGAAGCAC-GGGAGTAGGAA-GGGATAGAGAGCTTGT-GAAGGGAA  134

seq1  ACCTGGAAGGGGGATAAAATTTGAAATGTAAATAAATAAAATTATCAATG  200
      |||||||| |||||||||||||||||||||||||||| |||||||| |||
seq2  ACCTGGAA-GGGGATAAAATTTGAAATGTAAATAAAT-AAATTATC-ATG  181

seq1  AAAAAGAAGAAACAACAACAACAAAAAAGACAGGTAAGATTTAGTTCAGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAGAAGAAACAACAACAACAAAAAAGACAGGTAAGATTTAGTTCAGA  230

seq1  GTAAACTGAGTACTTTTACAGGGCAGTGTTGCTCCACCAAACATTGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTGAGTACTTTTACAGGGCAGTGTTGCTCCACCAAACATTGAAGG  280

seq1  CAGTCAGTATACTATTCTTAACAGACTGCTTTTCCTGAGGCCATTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGTCAGTATACTATTCTTAACAGACTGCTTTTCCTGAGGCCA-TTTCCT  329

seq1  GCCCAAGAGATTCACATGCCCATTTGGAATAATGCTCATTGGAGGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAGATTCACATGCCCATTTGGAATAATGCTCATTGGAGGGAAAA  379

seq1  TAATATGATCTACTCTTTACCAGAAAGCCTCCAGCTAAATAATAATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGATCTACTCTTTACCAGAAAGCCTCCAGCTAAATAATAATCTTA  429

seq1  TACATTTTAGATGATTTTATATTAATGACTACCAAGCCAACTTAGAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAGATGATTTTATATTAATGACTACCAAGCCAACTTAGAACCT  479

seq1  TATTTCTTCACCCAATACAAAAGCTATGATGCAGATCCTCTTCTCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCACCCAATACAAAAGCTATGATGCAGATCCTCTTCTCTTCTC  529

seq1  TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTACTCTTCTCTTCTCTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTACTCTTCTCTTCTCTTCTC  579

seq1  TTTTCTCGTCTCTTCTTTTTTTCTTTCTTTTCTTTTCTCTCTCCTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCGTCTCTTCTTTTTTTCTTTCTTTTCTTTTCTCTCTCCTCTCCT  629

seq1  CTTCTCTCCTCTCCTCTCTTCTTTTCTTTCTTCTTCTTTTTTTAAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTCTCCTCTCTTCTTTTCTTTCTTCTTCTTTTTTTAAACATA  679

seq1  GCATTTGTCCTCCTGTTTTAGGTCTGTCTTTTACAGGCTACAAATTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCCTCCTGTTTTAGGTCTGTCTTTTACAGGCTACAAATTATCA  729

seq1  CAATGGGGTACATCCCAGTGACCTTCAAGTGTGTTAATGTCTAATTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGTACATCCCAGTGACCTTCAAGTGTGTTAATGTCTAATTATCC  779

seq1  GTGCAAGAATTGTTAATATACAAAAAAAAAAATTTTAAATGAAAGGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGAATTGTTAATATACAAAAAAAAAAATTTTAAATGAAAGGATCT  829

seq1  GGATTAGGAGGAGAGGAGATATATTTGTAAAGAGGGTATTTATGGAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGGAGGAGAGGAGATATATTTGTAAAGAGGGTATTTATGGAAAAT  879

seq1  TTCCTTTAAAATATATTTCAAATTGAAATGTAATTACATTACTTTCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAAAATATATTTCAAATTGAAATGTAATTACATTACTTTCTCTC  929

seq1  CTCCATTACTTCCTCTCTTCAGGTCCTCCCAGATACTCTTGCATTGCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTACTTCCTCTCTTCAGGTCCTCCCAGATACTCTTGCATTGCCCT  979

seq1  TATATGACTGTCTCAAACGGTCTCCATTGCCACTCAGCATCGTATATAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACTGTCTCAAACGGTCTCCATTGCCACTCAGCATCGTATATAAA  1029

seq1  CCTTCAGTGCACTGAAAACCATGTTTAAAGGTCAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTGCACTGAAAACCATGTTTAAAGGTCAAGAATTC  1070