BAC Information

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BAC

Clone NameB6Ng01-104H15
Chromosome5 (Build37)
Map Location 15,004,928 - 15,026,736
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H15.bB6Ng01-104H15.g
ACCDH912765DH912766
length1,1831,043
definitionDH912765|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H15, 5' end.DH912766|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,004,928 - 15,005,928)(15,025,750 - 15,026,736)
sequence
gaattcttctatgcttcagtcctgttgtgtctggaagacactgtttcctt
ggtgtgagccttcctacaggctcctacacacttcctactgcctcttctcc
agagcttcctaagccccgaggcaagggatctgatgaagacatctcattta
gggcccaatgttccaagttctttcactcgttgcacatcatccagctgtgg
gttctgcactagaaccttctgcaagaggaagattctctgatgatggctga
gcaagtcattgaaccaaggatgcagcaggattttgttgagtcattttatt
ttactaagttcctttagcagaacattagcatttggttttaccctggcttt
aactagtctcaggattttggctacccaagcattgtcaggcatggatccta
tctcgtagagtgaaccttaaattgaatcagatggtggctggttatgccca
ttccttttgtactatggatccactagcatatctcgcaggctggtcatcac
tgtagaatgaatggtttgtagctgggttgttgtttgcctttctgctctgg
tagcaagcagagtaccttacagatcatgatcaccagtcagcaggggtgaa
agctctagttagacaccagcatgactttctccagtatgtaggtgttgtct
tcagcaatagggctttaccatctagtttaaactaatatttcttaaaatat
tgatctgagcttagtaaaatttacaaaataacatgctttaaattacaagt
ttttgtataaaaagatagtatattatttctttttattgggttcttgttgt
tttaaattccttaacaaaattaaagtttacctttttaaatgaataaagtt
taatctataacaatctcaatgagttactgctctttgcaattttatatttt
atacatacagcattttttacatttaaagcatgacgtcctaatatatacta
tcatggctgttgtcttaacagtctataaaaatagcttgaagatagttgct
aagtacgaccatctctgtgtacattcttgacagtcacgtgggttaacact
aacaacagggttataacgcagtaagcaatcattggggttatatcatcggc
tattaaatttaaccaaatgtaagttttattttaaagtgagagcaattaaa
tctgttcatttcaagggtttcctcaaggatact
gaattcagtcaatttgatgcagagagaacagtacaaagaatccgtgaaac
caagatcctgttctttgagacaatcaacaaggtagacttatgcttagcca
aattaactgaaaggtagagagacaatacccagaatagcaaaatcagaaat
gaaacaggagacataacaatggacactgaggtaattgaaagaatcactag
gtcttactgcagaagcctgtactgcaaaaaatagcaaaatccaaatgaaa
tgggtgacttataaacagctatcaattatcaaagttaaatgaagatctgg
taaagtaactaagaggcctataacccctaagaaaatagaaacagtcatca
aaagtcctccactccaaaaaagcccaagggcagaaagttgtagtgcagaa
ttctactagatattcaaaaaagagttagtgaaatactcctcaaatcattc
ataaagtagaaagagaagaaacatagctaaactcattctatgagttaata
gtcaccctgatacagaaaccacacaaagagtcaacaaaaaagaggaattc
agtccaatttctcttttttaaccacttcatactaatttacttatcttcat
agtaaggaagaatatgtcttccttgtgtatttaaaattatgagattagat
actgatattggacagaaggtaattgggttcataagaagtgatacataata
gaaaagaatatgttcatggatttggagtcaggactatgctgtgtattggt
tattgaaaattaatatcagagtgacacagttgtgtgtctttaggaagatg
actggtgggagacactgatcctaaaatgccttctgtattttagtctattt
tcctagaaaaacataggaaaaaagagtatattgggggtacatccaggaac
aggtctgggagccattaaattattcccagaggaaaagttcaccagttgct
aaagtgttttaccaggtgggatgaaagatatcctttcatacatggtgtga
aatgggtgagcgaagctttactattcattctctttccactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15004928_15005928
seq2: B6Ng01-104H15.b_220_1220

seq1  CACATCATCCAGCTGTGGGTTCTGCACTAGAACCTTCTGCAAGAGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATCCAGCTGTGGGTTCTGCACTAGAACCTTCTGCAAGAGGAAGA  50

seq1  TTCTCTGATGATGGATGAGCAAGTCATTGAACCAAGGATGCAGCAGGATT  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATGATGGCTGAGCAAGTCATTGAACCAAGGATGCAGCAGGATT  100

seq1  TTGTTGAGTCATTTTATTTTACTAAGTTCCTTTAGCAGAACATTAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGTCATTTTATTTTACTAAGTTCCTTTAGCAGAACATTAGCATT  150

seq1  TGGTTTTACCCTAGCTTTAACTAGTCTCAGGATTTTGGCTACCCAAGCAT  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTACCCTGGCTTTAACTAGTCTCAGGATTTTGGCTACCCAAGCAT  200

seq1  TGTCAGGCATGGATCCTATCTCGTAGAGTGAGCCTTAAATTGAATCAGAT  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTCAGGCATGGATCCTATCTCGTAGAGTGAACCTTAAATTGAATCAGAT  250

seq1  GGTGGCTGGTTATGCCCATTCCTTTTGTACTATGGATCCACTATCATATC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGGCTGGTTATGCCCATTCCTTTTGTACTATGGATCCACTAGCATATC  300

seq1  AAGCAGGCTGGTCATCACTGTAGAATGAATGGTTTGTAGCTGGGTTGATG  350
        ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCGCAGGCTGGTCATCACTGTAGAATGAATGGTTTGTAGCTGGGTTGTTG  350

seq1  TTTGCCTTTCTGCTCTGGTAGCAAGCAGAGTACCTTACAGATCATGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTCTGCTCTGGTAGCAAGCAGAGTACCTTACAGATCATGATCA  400

seq1  CCAGTCAGCAGGGGTGAAAGCTCTAGTTAGACACCAGCATGAC-TTCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCAGTCAGCAGGGGTGAAAGCTCTAGTTAGACACCAGCATGACTTTCTCC  450

seq1  AGTATGTAGGTGTTGTCTTCAGCGATAGGGCTTTACCATCTAGATT-AAC  498
      ||||||||||||||||||||||| ||||||||||||||||||| || |||
seq2  AGTATGTAGGTGTTGTCTTCAGCAATAGGGCTTTACCATCTAGTTTAAAC  500

seq1  TAATATTTCTTAAAATATTGATCTGAGCTTAGTAAAATTTACAAAATAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTTAAAATATTGATCTGAGCTTAGTAAAATTTACAAAATAAC  550

seq1  ATGCTTTAAATTACAAG-GTTTGTATAAAAAGATAGTATATTATTTCTTT  597
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  ATGCTTTAAATTACAAGTTTTTGTATAAAAAGATAGTATATTATTTCTTT  600

seq1  TTATTGGGTTCTTGTTG-TTTAAATTCCTTAACAAAATTAAAGTTTA-CT  645
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TTATTGGGTTCTTGTTGTTTTAAATTCCTTAACAAAATTAAAGTTTACCT  650

seq1  TTTTAAATGAATAAAGTTTAATCTATAAAAATGTCAATGAGTTACTGCTC  695
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  TTTTAAATGAATAAAGTTTAATCTATAACAATCTCAATGAGTTACTGCTC  700

seq1  TTTTGCAATTTTATATTTTATACATACAAGCATTTTTTAACATTTAAAAG  745
       |||||||||||||||||||||||||| |||||||||| |||||| ||||
seq2  -TTTGCAATTTTATATTTTATACATAC-AGCATTTTTT-ACATTT-AAAG  746

seq1  CATGACAGTCCTAATATAATACTATCATGGCTGTTGTCTTAACAGTCTAT  795
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  CATGAC-GTCCTAATAT-ATACTATCATGGCTGTTGTCTTAACAGTCTAT  794

seq1  AAAAATAGC-TGAAGATAAGTTGCTAAGTTACGACCATCTCTGTGTACA-  843
      ||||||||| ||||||| |||||||||| |||||||||||||||||||| 
seq2  AAAAATAGCTTGAAGAT-AGTTGCTAAG-TACGACCATCTCTGTGTACAT  842

seq1  TCCTGACAGTCACGTGAGTTAACACTAACAACAGTGTTATAACGCAGTAA  893
      || ||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TCTTGACAGTCACGTGGGTTAACACTAACAACAGGGTTATAACGCAGTAA  892

seq1  GCAATCATTGGGGTTTATTCATCGTCATGTAAATGT-AGCAAATGTAAAA  942
      |||||||||||||||   |||||| |   ||||| | | |||||||  ||
seq2  GCAATCATTGGGGTTATATCATCGGCTATTAAATTTAACCAAATGT--AA  940

seq1  GTTATATTTTAATGT-AGAGCATATAAAGATG-TCAATTCCAAGGTTTCC  990
      ||| |||||||| || ||||||  ||||  || ||| ||| | |||||||
seq2  GTTTTATTTTAAAGTGAGAGCAATTAAATCTGTTCATTTCAAGGGTTTCC  990

seq1  TCAAGTATACT  1001
      ||||| |||||
seq2  TCAAGGATACT  1001

seq1: chr5_15025750_15026736
seq2: B6Ng01-104H15.g_134_1110 (reverse)

seq1  GAAAGTGGAAAGAGGGTGAATAGGTAAAGCTTTTGCTCACCCATTTCACA  50
      ||||||||||||||  |||||| ||||||| || ||||||||||||||||
seq2  GAAAGTGGAAAGAGAATGAATA-GTAAAGC-TTCGCTCACCCATTTCACA  48

seq1  CCAATTGTATTTGAAAGGATATCTTTCATCCCACCTGGTAAAAACACTTT  100
      |||  ||||  |||||||||||||||||||||||||||| ||||||| ||
seq2  CCA--TGTA--TGAAAGGATATCTTTCATCCCACCTGGT-AAAACAC-TT  92

seq1  TAGCAACTGGTTGAAACTTTTCCTCTGGGAAT-ATGTAATGGCTTCCAGA  149
      |||||||||||   |||||||||||||||||| || |||||||| |||||
seq2  TAGCAACTGGT--GAACTTTTCCTCTGGGAATAATTTAATGGCTCCCAGA  140

seq1  CCTGTTTCCTGGATGTA-CCCCAATATATTCTTTTTTCCTATGTTTTTCT  198
      |||| |||||||||||| |||||||||| |||||||||||||||||||||
seq2  CCTG-TTCCTGGATGTACCCCCAATATACTCTTTTTTCCTATGTTTTTCT  189

seq1  AGGAAAATAGACTAAAATACAGAAGGCATTTTAGGATCAGTGTCTCCCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAGACTAAAATACAGAAGGCATTTTAGGATCAGTGTCTCCCAC  239

seq1  CAGTCATCTTTTTAAAGACACACAACTGTGTCACTCTGATATTAATATTC  298
      ||||||||||  |||||||||||||||||||||||||||||||||| |||
seq2  CAGTCATCTTCCTAAAGACACACAACTGTGTCACTCTGATATTAATTTTC  289

seq1  AATAACCAATACACAGCATAGTCCTGACTCCAATTCCATGAACATGTTCT  348
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  AATAACCAATACACAGCATAGTCCTGACTCCAAATCCATGAACATATTCT  339

seq1  TTTCTATTATGTATCACTTCTTATGAACCCAATTACCTTCTGTCCAATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTATGTATCACTTCTTATGAACCCAATTACCTTCTGTCCAATAT  389

seq1  CAGTATCTAATCTCATAATTTTAAATACACAAGGAAGACATATTCTTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTAATCTCATAATTTTAAATACACAAGGAAGACATATTCTTCCT  439

seq1  TATTATGAAGATAAGTAAATTAGTATGAAGTGGTTAAAAAAGAGAAATTG  498
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAAGATAAGTAAATTAGTATGAAGTGGTTAAAAAAGAGAAATTG  489

seq1  GACTGAATTCCTCTTTCTTTGTTGAGTCTTTGTGTGGTTTCTGTACCAGG  548
      |||||||||||||||| |||||||| ||||||||||||||||||| ||||
seq2  GACTGAATTCCTCTTT-TTTGTTGACTCTTTGTGTGGTTTCTGTATCAGG  538

seq1  GTGACTATGAACTCATAGAATGAGTTTAGCTATGTTTCTTCTGTTTCTAC  598
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GTGACTATTAACTCATAGAATGAGTTTAGCTATGTTTCTTCTCTTTCTAC  588

seq1  TTTATGAATGATTTGAGGAGTATTTCACTAACTCTTTTTTGAATATCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATGATTTGAGGAGTATTTCACTAACTCTTTTTTGAATATCTAG  638

seq1  TAGAATTCTGCACTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCTGCACTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGAGG  688

seq1  ACTTTTGATGACTGTTTCTATTTCCTTAGGGGTTATAGGCCTGTTAGTTA  748
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ACTTTTGATGACTGTTTCTATTTTCTTAGGGGTTATAGGCCTCTTAGTTA  738

seq1  CTTTACCAGATCTTCATTTAACTTTGATAATTGATAGCTGTCTATAAGTC  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTACCAGATCTTCATTTAACTTTGATAATTGATAGCTGTTTATAAGTC  788

seq1  ACCCATTTCATTTGGATTTTGCTATTTTTTGCAGTACAGGCTTCTGCAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTCATTTGGATTTTGCTATTTTTTGCAGTACAGGCTTCTGCAGT  838

seq1  AAGACCTAGTGATTCTTTCAATTACCTCAGTGTCCATTGTTATGTCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTAGTGATTCTTTCAATTACCTCAGTGTCCATTGTTATGTCTCCT  888

seq1  GTTTCATTTCTGATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTCTGATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCAGT  938

seq1  TAATTTGGCTAAGCATAAGTCTACCTTGTTGATTGTCTC  987
      |||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGCTAAGCATAAGTCTACCTTGTTGATTGTCTC  977