BAC Information

Click to search

BAC

Clone NameB6Ng01-104H18
Chromosome5 (Build37)
Map Location 10,703,311 - 10,704,049
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC381612, EG625586, LOC242809
Downstream geneLOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H18.bB6Ng01-104H18.g
ACCDH912771DH912772
length1,060853
definitionDH912771|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H18, 5' end.DH912772|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtatattttggacattacccctctatggatgtcaaattggt
gaacatgtttcccaatccatagattgccattttgttcaattgacagtgtc
acttgtcttacagttttataagataccatttgtcagttgtctatcttaga
gcctgaaccatcagtgttctgttcaggaactttttcccctgttccaatga
attttccccctgttccaatactttctaggctattgccaatgttggttttc
gagaacagtatcgagtacttttgcattgataatcactagtgaagctgacc
tgaagttctcttttcctgttggcactttgtgtggtttaggtatcaaaata
actatggctttatagttttccttctgattcaaaatccttttgattttgtg
gataagtttgagtagtgttgattttgggtcttctttgaaagtctggtaga
attctgcactaaaacatcagagccctgggccctgctcttaacgtaaattt
ggtccactgtatctgtctataacactacccatttcatctagattttccag
tttgttgagtataggattttgtagaatggtctaatgatttttttgagttt
gcacattttctgttatgtctcccatttacttctcatttttgttactttag
atactgtctctgtgtctttaattttgtctaagggtttatgtatcttgatg
aaccagttcttggttttgttgtttttattaaaattttctttctttattcc
taatagaataatttcagcccttagttttattatttcatgtcatcaactcc
tcttgggtacgtttgtttctttttgtctagagctttcagttgtgtgggta
agttactactactactgtacgatttcttcaatttcttcaagaggacactt
actgctatgaattttgtccttacactgctttctttgtttcccataagttg
ggtatgctgtgtcttcattttcatcgaattccagaaatctttaatttctt
tctatatttcctccctaaccatttcatgggattatttcatcttcttttat
agtaagactt
gaattccacacccctaagccccttaccccataaaaacccctatcttccta
gcctagtggcctacttccattatctcctgtgtatgatgcatgttggtctg
gagctccataattaaacgacctcatgtaattacatcaagatggtccttcg
tgatttttttgggtgcacgctgaatcgggaattgagttgggatttccgca
ctaggctctatctcttgcaactaaccattgtgaatagttccacaaataag
ggacatggcatgaagaacacccttattatctgtgctcagattaggcttgc
tgtgttttcagcaagtcttgtgcaagtagcaacacatgagctcctctcag
ttcatgagtgtaatagttatgtcatcctcaggagacagaatttcctagca
ctcttcttcacccttaagaccttccattctttctacttcctcttcaacag
ggtttccacagctttggccaagcttggagggggcacaagtgttaacttct
atgctccattcaggcctgagtcctcagtctgtgattctctgcactttgac
cagaagcatctcatctttcgttaattacttcacatgaaaagaaaagttga
tctgacaaagtttaagaacagtctgtatctatgagtttatttagaaggta
ttttttggggggagtgggggtcgagacagggtttctctgtgtctccctgg
ctgttctataactcactcagtaaactgtgtcaaactcagaaattcttttt
gtctcggcctacaagtgctggtattaaaggtgtgcgacaacagaccatac
tagcaagggtgttttataagaaagaaaataacctgtttcttggaaagata
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10703311_10704049
seq2: B6Ng01-104H18.b_43_783

seq1  GAATTCTTTGTATATTTTGGACATTAGCCCTCTATGGATGTCAAATTGGT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTTTGTATATTTTGGACATTACCCCTCTATGGATGTCAAATTGGT  50

seq1  GAACATGTTTCCCAATCCATAGATTGCCATTTTGTTCAATTGACAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTTTCCCAATCCATAGATTGCCATTTTGTTCAATTGACAGTGTC  100

seq1  ACTTGTCTTACAGTTTTATAAGATACCATTTGTCAGTTGTCTATCTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTACAGTTTTATAAGATACCATTTGTCAGTTGTCTATCTTAGA  150

seq1  GCCTGAACCATCAGTGTTCTGTTCAGGAACTTTTTCCCCTGTTCCAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAACCATCAGTGTTCTGTTCAGGAACTTTTTCCCCTGTTCCAATGA  200

seq1  ATTTTCCCCCTGTTCCAATACTTTCTAGGCTATTGCCAATGTTGGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCCCTGTTCCAATACTTTCTAGGCTATTGCCAATGTTGGTTTTC  250

seq1  GAGAACAGTATCGAGTACTTTTGCATTGATAATCACTAGTGAAGCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTATCGAGTACTTTTGCATTGATAATCACTAGTGAAGCTGACC  300

seq1  TGAAGTTCTCTTTTCCTGTTGGCACTTTGTGTGGTTTAGGTATCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCTCTTTTCCTGTTGGCACTTTGTGTGGTTTAGGTATCAAAATA  350

seq1  ACTATGGCTTTATAGTTTTCCTTCTGATTCAAAATCCTTTTGATTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGCTTTATAGTTTTCCTTCTGATTCAAAATCCTTTTGATTTTGTG  400

seq1  GATAAGTTTGAGTAGTGTTGATTTTGGGTCTTCTTTGAAAGTCTGGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTTGAGTAGTGTTGATTTTGGGTCTTCTTTGAAAGTCTGGTAGA  450

seq1  ATTCTGCACTAAAACATCAGAGCCCTGGGCCCTGCTCTTAACGTAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACTAAAACATCAGAGCCCTGGGCCCTGCTCTTAACGTAAATTT  500

seq1  GGTCCACTGTATCTGTCTATAACACTACCCATTTCATCTAGATTTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACTGTATCTGTCTATAACACTACCCATTTCATCTAGATTTTCCAG  550

seq1  TTTGTTGAGTATAGGATTTTGTAGAATGGTCTAATGATTTTTTTGAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAGTATAGGATTTTGTAGAATGGTCTAATGATTTTTTTGAGTTT  600

seq1  GCACATTTTCTGTTATGTCTCCCATTTACTTCTCATTTTTGTTACTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTCTGTTATGTCTCCCATTTACTTCTCATTTTTGTTACTTTAG  650

seq1  ATACTGTCTCTGTGTCTTTAA-TTTGTCTAAGGGTTTATGTATCTTGATG  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATACTGTCTCTGTGTCTTTAATTTTGTCTAAGGGTTTATGTATCTTGATG  700

seq1  AACCAGTTCTTGGTTTTGTTG-TTTTATTAAAATTTTCTTT  739
      ||||||||||||||||||||| |||||||||||||||||||
seq2  AACCAGTTCTTGGTTTTGTTGTTTTTATTAAAATTTTCTTT  741