BAC Information

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BAC

Clone NameB6Ng01-104J13
Chromosome5 (Build37)
Map Location 104,090,715 - 104,255,068
singlet/doubletdoublet
Overlap geneAff1
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
Downstream geneKlhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104J13.bB6Ng01-104J13.g
ACCDH912846DH912847
length284733
definitionDH912846|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J13, 5' end.DH912847|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,090,715 - 104,090,998)(104,254,336 - 104,255,068)
sequence
aaggccagcctggtctacaaagtgagttccaggacagctaggggctgtta
tacagagaaatcctgtctcacaaaaacaaacaaactaaaaaatacattct
agtaaaaaaaaaaaatcagtagctagatcattaatgagcttactcagaaa
gtaattagaaaatatatcccactgacaatgggggagacaggacctgggac
aaactaaagtaaccaaagaagttaaagatgtcacatgaaaaacttttgtt
tgtttgttttgttttgttttttgagacaggattt
gaattcaacactcacttgctccgtgtcgctgtcttcactgtcgctgagct
gcaggtcgtcctccagcatgctggggagaagcgacagacagtggagaatt
taggagaacgaataactttatagaacatgggggctggggggaggcaggga
taagctggagacttgttttgtttgcttgcttaaatcaattttctagaaac
tcaagctttaccacttaacattaaaatcaggtcagccaagctcctgacaa
tgcaaaagccgaacatcccacctgtttggaaccctgcagacaacttctgg
caggcattttttacctgccctcgactcctattcagggagaacacgaacac
acacgaacacacacacacacacacacacacacacacacacgaagacgaag
ggaatacacagacagcaaatgaccctgaaccaccttcttccattgtctct
gacagaagtaaaataagcggttatctatgctgcttcccaatggaagtgag
gtatttaaacagtgctaagcaagcacaaaaaccctcaagacaccctcttc
atttttgtccaaaggacactattaatttgtcacagacctcctccccaaaa
aatcattctcttttggtcacttggatacaaatcaatgctcaaagttccca
ttagtttagctaataatgcaaatggccctgttgaaagtatatctcaatct
tagcactactaattttggtggggggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104090715_104090998
seq2: B6Ng01-104J13.b_53_336

seq1  AAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGGCTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGGCTGTTA  50

seq1  TACAGAGAAATCCTGTCTCACAAAAACAAACAAACTAAAAAATACATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAATCCTGTCTCACAAAAACAAACAAACTAAAAAATACATTCT  100

seq1  AGTAAAAAAAAAAAATCAGTAGCTAGATCATTAATGAGCTTACTCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAAAAAAAATCAGTAGCTAGATCATTAATGAGCTTACTCAGAAA  150

seq1  GTAATTAGAAAATATATCCCACTGACAATGGGGGAGACAGGACCTGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGAAAATATATCCCACTGACAATGGGGGAGACAGGACCTGGGAC  200

seq1  AAACTAAAGTAACCAAAGAAGTTAAAGATGTCACATGAAAAACTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAGTAACCAAAGAAGTTAAAGATGTCACATGAAAAACTTTTGTT  250

seq1  TGTTTGTTTTGTTTTGTTTTTTGAGACAGGGTTT  284
      |||||||||||||||||||||||||||||| |||
seq2  TGTTTGTTTTGTTTTGTTTTTTGAGACAGGATTT  284

seq1: chr5_104254336_104255068
seq2: B6Ng01-104J13.g_68_800 (reverse)

seq1  TCCCCCCCCCCCCCACCAAAATTAGTAGTGCTAAGATTGAGATATACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCCCCACCAAAATTAGTAGTGCTAAGATTGAGATATACTTT  50

seq1  CAACAGGGCCATTTGCATTATTAGCTAAACTAATGGGAACTTTGAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGCCATTTGCATTATTAGCTAAACTAATGGGAACTTTGAGCATT  100

seq1  GATTTGTATCCAAGTGACCAAAAGAGAATGATTTTTTGGGGAGGAGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTATCCAAGTGACCAAAAGAGAATGATTTTTTGGGGAGGAGGTCT  150

seq1  GTGACAAATTAATAGTGTCCTTTGGACAAAAATGAAGAGGGTGTCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATTAATAGTGTCCTTTGGACAAAAATGAAGAGGGTGTCTTGAG  200

seq1  GGTTTTTGTGCTTGCTTAGCACTGTTTAAATACCTCACTTCCATTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTGCTTGCTTAGCACTGTTTAAATACCTCACTTCCATTGGGAA  250

seq1  GCAGCATAGATAACCGCTTATTTTACTTCTGTCAGAGACAATGGAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATAGATAACCGCTTATTTTACTTCTGTCAGAGACAATGGAAGAAG  300

seq1  GTGGTTCAGGGTCATTTGCTGTCTGTGTATTCCCTTCGTCTTCGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCAGGGTCATTTGCTGTCTGTGTATTCCCTTCGTCTTCGTGTGTG  350

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTGTGTGTTCGTGTTCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTTCGTGTGTGTTCGTGTTCTCCCT  400

seq1  GAATAGGAGTCGAGGGCAGGTAAAAAATGCCTGCCAGAAGTTGTCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAGTCGAGGGCAGGTAAAAAATGCCTGCCAGAAGTTGTCTGCAG  450

seq1  GGTTCCAAACAGGTGGGATGTTCGGCTTTTGCATTGTCAGGAGCTTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAAACAGGTGGGATGTTCGGCTTTTGCATTGTCAGGAGCTTGGCT  500

seq1  GACCTGATTTTAATGTTAAGTGGTAAAGCTTGAGTTTCTAGAAAATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATTTTAATGTTAAGTGGTAAAGCTTGAGTTTCTAGAAAATTGAT  550

seq1  TTAAGCAAGCAAACAAAACAAGTCTCCAGCTTATCCCTGCCTCCCCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAGCAAACAAAACAAGTCTCCAGCTTATCCCTGCCTCCCCCCAG  600

seq1  CCCCCATGTTCTATAAAGTTATTCGTTCTCCTAAATTCTCCACTGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGTTCTATAAAGTTATTCGTTCTCCTAAATTCTCCACTGTCTGT  650

seq1  CGCTTCTCCCCAGCATGCTGGAGGACGACCTGCAGCTCAGCGACAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTCCCCAGCATGCTGGAGGACGACCTGCAGCTCAGCGACAGTGAA  700

seq1  GACAGCGACACGGAGCAAGTGAGTGTTGAATTC  733
      |||||||||||||||||||||||||||||||||
seq2  GACAGCGACACGGAGCAAGTGAGTGTTGAATTC  733