BAC Information

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BAC

Clone NameB6Ng01-104P06
Chromosome5 (Build37)6 (Build37)
Map Location 18,084,511 - 18,084,56359,295,338 - 59,296,454
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104P06.bB6Ng01-104P06.g
ACCDH913105DH913106
length9951,111
definitionDH913105|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P06, 5' end.DH913106|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,563)(59,295,338 - 59,296,454)
sequence
gaattcaagaagtttggccccaggcaaacaaataaccctattaaaaaata
gggtacagagcaaaaaaaaaaaaaatgaattctcaactgaggaatactga
atgtccaagaaacacctaaagaaatgttcaacatccatagtcatcaggga
aatgcaaattaaaatgaccctgagattctacctcacaccattaagtatgg
caaagatcaaatggtgaggatgtggaaaaagaggagcactcctccattct
tggtgggatggcaagctggtgcaaccaatctggaaatcagtctagaggtt
gctcagaaaattggacatagcattacctgaggacccagctatataactcc
tgagcatagacccaaaggatgctccaacatataacaaggtcacatgctcc
actatgttcatagcagccttatttataatagccaggagctggaaagaacc
cagatgtccctcaaaggagaaatggatagagaaaatatggaacatttaca
caatggtgtactactgatctattaagatcaaggaattcacaaaactctta
ggtaaatggatgaacgtaggaagtaacatcctgagtgatgtaatccagta
atagaagacaaggtaggcagtcacagatagatagatagatagatagatag
atagatagatagatagatattaacccaaaagctcggaaaacccaagatac
aattcacagaccacataaagctcaagaagaaaatcaaagtgtggatgcat
cagtccttcatagaaggaggaacaaaatactcatgggaggaaatatggag
acaaaatgtggagcagagactgaagtgaagaacatccagaaactgcctga
ggatccatcccatatacagacaccaaacccaaatattatgaatgccaaga
agtgcttgctaacaggaatctgatatagctgtctcctgagaggctctgct
agagcctcacaaataagaggcatattcatatgatcaagccactgt
gaattctctatcaaggggaattctggtatttccatttatattgttagccc
agcaattagttaatgcagttttcagtgtcatggaacccgggtcaaattga
actaacttttaacaatgtcagtcctgatctttatttaatagatgaaattt
tccatgaaaagaaattagtaaaatttgatcaattccttaagaaaaactgt
gataaactaggtatttctgtttcaaattgccactaattggataatggtat
tggccttggtatttttctgtacagagtatcagtgtgtttcttaaggaact
cccaattgtcttgttgtgataacttactataatttgttttcattttgatc
tcttatttctctttggtttgggcacatactgttttactaatttcaagaga
aggcctgtgattgtctcttcgttgagtcattatatacactagagaaatct
ggagatacttcaacaaaaatgtaagcttcctctcaggctctgcaaataaa
tattggtaaaggtccaattcagctttcaaaataaaagtggttttcctcag
tgtgtgtcatttccagatattgttccgaacttaaaaaatagcattaataa
ctctgaatctgttcagataccagacttagtgagatgctaaataggctgtg
tttttattacttgtaaaatctgccatttgggtatatcatttaaggaagag
cattccattttcaatattaatatgtgcaaattaggaaagtcctgaaagat
gtaactattagttgttttgttaataattttgtcaaaagtagcagtttaaa
taaaatgcattttgtgtgcacatctatttggatatgctatttacagttgg
ccaaatatgtattttatgtgtagaaaatgaaaatacatattgattagcca
ttttgaggcttttgatttattatttctttgttctgcttttctgcaattgc
ttaaaaatttgataattcatacaaggtatgtacacaatcacactcatggt
atgcacatactgtcacacaattaacacagagcatgtgttgaggaatctaa
accagtggtcaagaacctgacctacttgtgactatggcatatgaaatagc
ttggcaattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084563
seq2: B6Ng01-104P06.b_432_484 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGAC  50

seq1  CTT  53
      |||
seq2  CTT  53

seq1: chr6_59295338_59296454
seq2: B6Ng01-104P06.g_66_1176

seq1  GAATTCTCTATCAAGGGGAATTCTGGTATTTCCATTTATATTGTTAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCAAGGGGAATTCTGGTATTTCCATTTATATTGTTAGCCC  50

seq1  AGCAATTAGTTAATGCAGTTTTCAGTGTCATGGAACCCGGGTCAAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTAGTTAATGCAGTTTTCAGTGTCATGGAACCCGGGTCAAATTGA  100

seq1  ACTAACTTTTAACAATGTCAGTCCTGATCTTTATTTAATAGATGAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTTTTAACAATGTCAGTCCTGATCTTTATTTAATAGATGAAATTT  150

seq1  TCCATGAAAAGAAATTAGTAAAATTTGATCAATTCCTTAAGAAAAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAAAGAAATTAGTAAAATTTGATCAATTCCTTAAGAAAAACTGT  200

seq1  GATAAACTAGGTATTTCTGTTTCAAATTGCCACTAATTGGATAATGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTAGGTATTTCTGTTTCAAATTGCCACTAATTGGATAATGGTAT  250

seq1  TGGCCTTGGTATTTTTCTGTACAGAGTATCAGTGTGTTTCTTAAGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGGTATTTTTCTGTACAGAGTATCAGTGTGTTTCTTAAGGAACT  300

seq1  CCCAATTGTCTTGTTGTGATAACTTACTATAATTTGTTTTCATTTTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGTCTTGTTGTGATAACTTACTATAATTTGTTTTCATTTTGATC  350

seq1  TCTTATTTCTCTTTGGTTTGGGCACATACTGTTTTACTAATTTCAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCTCTTTGGTTTGGGCACATACTGTTTTACTAATTTCAAGAGA  400

seq1  AGGCCTGTGATTGTCTCTTCGTTGAGTCATTATATACACTAGAGAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTGATTGTCTCTTCGTTGAGTCATTATATACACTAGAGAAATCT  450

seq1  GGAGATACTTCAACAAAAATGTAAGCTTCCTCTCAGGCTCTGCAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACTTCAACAAAAATGTAAGCTTCCTCTCAGGCTCTGCAAATAAA  500

seq1  TATTGGTAAAGGTCCAATTCAGCTTTCAAAATAAAAGTGGTTTTCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTAAAGGTCCAATTCAGCTTTCAAAATAAAAGTGGTTTTCCTCAG  550

seq1  TGTGTGTCATTTCCAGATATTGTTCCGAACTTAAAAAATAGCATTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCATTTCCAGATATTGTTCCGAACTTAAAAAATAGCATTAATAA  600

seq1  CTCTGAATCTGTTCAGATACCAGACTTAGTGAGATGCTAAATAGGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATCTGTTCAGATACCAGACTTAGTGAGATGCTAAATAGGCTGTG  650

seq1  TTTTTATTACTTGTAAAATCTGCCATTTGGGTATATCATTTAAGGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTACTTGTAAAATCTGCCATTTGGGTATATCATTTAAGGAAGAG  700

seq1  CATTCCATTTTCAATATTAATATGTGCAAATTAGGAAAGTCCTGAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATTTTCAATATTAATATGTGCAAATTAGGAAAGTCCTGAAAGAT  750

seq1  GTAACTATTAGTTGTTTTGTTAATAATTTTGTCAAAAGTAGCAGTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATTAGTTGTTTTGTTAATAATTTTGTCAAAAGTAGCAGTTTAAA  800

seq1  TAAAATGCATTTTGTGTGCACATCTATTTGGATATGCTATTTACAGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCATTTTGTGTGCACATCTATTTGGATATGCTATTTACAGTTGG  850

seq1  CCAAATATGTATTTTATGTGTAGAAAATGAAAATACATATTGATTAGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATGTATTTTATGTGTAGAAAATGAAAATACATATTGATTAGCCA  900

seq1  TTTTGAGGCTTTTGATTTATTATTTCTTTGTTCTGCTTTTCTGCAATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGCTTTTGATTTATTATTTCTTTGTTCTGCTTTTCTGCAATTGC  950

seq1  TTAAAAAATTTGATAATTCATACAAGGTATGTACACAATCACACTCATGG  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-AAAAATTTGATAATTCATACAAGGTATGTACACAATCACACTCATGG  999

seq1  TATGCACATACTGTCACACAATTAACACAGAGCATGTG-TGAGGAATCTA  1049
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATGCACATACTGTCACACAATTAACACAGAGCATGTGTTGAGGAATCTA  1049

seq1  AACCCAGTGGTCAAAGAACTGACCTTACTTGTGACTAATGGCATATGAAA  1099
      || |||||||||||  | |||||| ||||||||||| |||||||||||||
seq2  AA-CCAGTGGTCAAGAACCTGACC-TACTTGTGACT-ATGGCATATGAAA  1096

seq1  TTAGCTCTGGCATATTTA  1117
       ||||| ||||| |||||
seq2  -TAGCT-TGGCA-ATTTA  1111