BAC Information

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BAC

Clone NameB6Ng01-104P13
Chromosome5 (Build37)Y (Build37)
Map Location 24,916,633 - 24,917,7392,652,636 - 2,652,692
singlet/doubletsingletsinglet
Overlap geneMll3
Upstream geneAccn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104P13.bB6Ng01-104P13.g
ACCDH913118DH913119
length1,091949
definitionDH913118|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P13, 5' end.DH913119|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,916,633 - 24,917,739)(2,652,636 - 2,652,692)
sequence
gaattcactatatagattctgcctcctggtcccaggattaaaggtgtgtt
ccaccacatctagtcacacttgtactttttaataaaggcaaacattctaa
aacatatggacctgcaaaatctaatatatcagaaatgatcagtattatac
aaataggagtcctttaatacaaactaaagtatataaaaaaatgataataa
aacataatgaaaactttgtaaaatgaagctaaaattctaatcaaaagagc
agttattcacttacagaaattaaaactttagatgttgataatttaagttt
tctgtaaaagaggtcgcctgaatttaaatgaagacaatgacaaaaaatta
aaagaaaaaaaattaggatctggaaagatggttcagtggttataagtatt
tattgttcttgaatttagttgctaacacccatatagtatatcacaaccat
ccactgcaaaaacacagtaacacacacacaaacacacaaaccacgtgcat
aaaataaaaaatgtttaaaagaaacagattgtggtgatacaatggaaatt
aatgaaataaagatgtcaaataaaaaaaaaacctgaacccaattactcaa
aaatatctctgggaaggactggagagatggctcagcatttaagagtgttg
attgctctttctgaggtcctgagttcaattcccaacaaccacatggtggc
tcacaaccatctgaagagagcaaaagtatactcacatacataaaatacat
taataaatctttttttaaaaaactcttcaaggggctggcgagatggctca
gtggttaagagcgtcgactgctcttccgaaggtcctgagttcaaatctca
gcaaccacatggtggctcacaaccatccgtaatgaaatctaatgccctct
tttggagtatctgaggacagctacagtgtacttacatataataattaaac
aaatcttaaaaaaaaactttgagacaaagttggcaagtgcaattaatttc
ctttattaagaacactatacagacacaaaaatatggttatctgctacttc
ttttatataatgcagaaatactaggctaacttaacttggca
gaattccaatggctcatgctctaagatcaagaattgataaatgggacctc
atgaaacttgaaagcttctgtaaggcaaaggacatagtcaataagacaac
tcgaaaacgtacagattgggggggaaaaatcttcactaacctcacatgtg
ggaagccgccctcacattcgccgttgcaagatggcgctgacatcctgtgt
tctaagtggtaaacaaataatctgcgcatgtgccaagggtagttctccac
tccatgtgctctgtcttccccgtgacgacaactcggccgatgggctgcag
ccaatcagggagtgacacgtcctaggcggaggataattctccttaaaagg
gatggggtttcgccattctctctcttgctctcttgctctcttgctctctg
gctcctaaagatgtaagcaatagagctcttgctctcttgctcttgctctt
gctctcttgctctcttgctctctggctcctgaagatgtaagcaataaagc
ttttgccgcagaagattccagtttgttgtgttcttcctggccggtcgcga
gaacgcgtgtaagagttggtgccgagacccgggacgagaagacctgggac
gagaaaacccaggacaagaaaacccaggacggttaccatcaccggtgcaa
ggaagatccctcattccggaaccagaactgcgggtcatggtaatgaagtg
ttcccgtaaaacagactgttgagaaggattcagcctggattcagaactct
tcagctggggaacggtggtaatgaagtgttcccgcaacacagactgttga
gaaggatcaactgcgtgaattcagaactcttcagctgggaacagggttac
ccgtaagtacagctttacaaggtaagtctggtcttgaacttctaacgaaa
ttcagacagtctatcagaagtaaagtgggaaatagcttacaggtatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24916633_24917739
seq2: B6Ng01-104P13.b_48_1138

seq1  GAATTCACTATATAGATTCTGCCTCCTGGTCCCAGGATTAAAGGTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATAGATTCTGCCTCCTGGTCCCAGGATTAAAGGTGTGTT  50

seq1  CCACCACATCTAGTCACACTTGTACTTTTTAATAAAGGCAAACATTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACATCTAGTCACACTTGTACTTTTTAATAAAGGCAAACATTCTAA  100

seq1  AACATATGGACCTGCAAAATCTAATATATCAGAAATGATCAGTATTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGGACCTGCAAAATCTAATATATCAGAAATGATCAGTATTATAC  150

seq1  AAATAGGAGTCCTTTAATACAAACTAAAGTATATAAAAAAATGATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAGTCCTTTAATACAAACTAAAGTATATAAAAAAATGATAATAA  200

seq1  AACATAATGAAAACTTTGTAAAATGAAGCTAAAATTCTAATCAAAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATGAAAACTTTGTAAAATGAAGCTAAAATTCTAATCAAAAGAGC  250

seq1  AGTTATTCACTTACAGAAATTAAAACTTTAGATGTTGATAATTTAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCACTTACAGAAATTAAAACTTTAGATGTTGATAATTTAAGTTT  300

seq1  TCTGTAAAAGAGGTCGCCTGAATTTAAATGAAGACAATGACAAAAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAAGAGGTCGCCTGAATTTAAATGAAGACAATGACAAAAAATTA  350

seq1  AAAGAAAAAAAATTAGGATCTGGAAAGATGGTTCAGTGGTTATAAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAATTAGGATCTGGAAAGATGGTTCAGTGGTTATAAGTATT  400

seq1  TATTGTTCTTGAATTTAGTTGCTAACACCCATATAGTATATCACAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTTGAATTTAGTTGCTAACACCCATATAGTATATCACAACCAT  450

seq1  CCACTGCAAAAACACAGTAACACACACACAAACACACAAACCACGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAAAAACACAGTAACACACACACAAACACACAAACCACGTGCAT  500

seq1  AAAATAAAAAATGTTTAAAAGAAACAGATTGTGGTGATACAATGGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATGTTTAAAAGAAACAGATTGTGGTGATACAATGGAAATT  550

seq1  AATGAAATAAAGATGTCAAATAAAAAAAAAACCTGAACCCAATTACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATAAAGATGTCAAATAAAAAAAAAACCTGAACCCAATTACTCAA  600

seq1  AAATATCTCTGGGAAGGACTGGAGAGATGGCTCAGCATTTAAGAGTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTCTGGGAAGGACTGGAGAGATGGCTCAGCATTTAAGAGTGTTG  650

seq1  ATTGCTCTTTCTGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTTCTGAGGTCCTGAGTTCAATTCCCAACAACCACATGGTGGC  700

seq1  TCACAACCATCTGAAGAGAGCAAAAGTATACTCACATACATAAAATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGAAGAGAGCAAAAGTATACTCACATACATAAAATACAT  750

seq1  TAATAAATCTTTTTTTAAAAAACTCTTCAAGGGGCTGGCGAGATGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCTTTTTTTAAAAAACTCTTCAAGGGGCTGGCGAGATGGCTCA  800

seq1  GTGGTTAAGAGCGTCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGGTTAAGAGCGTCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCA  850

seq1  GCAACCACATGGTGGCTCACAACCATCCGTAATGAAATCTAATGCCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGGCTCACAACCATCCGTAATGAAATCTAATGCCCTCT  900

seq1  TTTGGAGTATCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAAC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGGAGTATCTGAGGACAGCTACAGTGTACTTACATATAATAATTAAAC  950

seq1  AAATCTTAAAAAAAAAACTTTGAGAACAAAGTTGGCAAAGTGCAAATTAA  1000
      ||||||| |||||||||||||||| ||||||||||| |||||| ||||||
seq2  AAATCTT-AAAAAAAAACTTTGAG-ACAAAGTTGGC-AAGTGC-AATTAA  996

seq1  TTTCCTTTAATAAAGGAAACAACTATACAGACAACAAAAAATAATGGTTA  1050
      ||||||||| |||  |||   ||||||||||| |||||||   |||||||
seq2  TTTCCTTTATTAA--GAA--CACTATACAGAC-ACAAAAA--TATGGTTA  1039

seq1  TTCTTGCTACTTCTTTTTAATATAATGGCAGAAATACTAAGCTAACTTAA  1100
      |   |||||||||||||  ||||||| |||||||||||| ||||||||||
seq2  T--CTGCTACTTCTTTT--ATATAAT-GCAGAAATACTAGGCTAACTTAA  1084

seq1  CTTGGCA  1107
      |||||||
seq2  CTTGGCA  1091

seq1: chrY_2652636_2652692
seq2: B6Ng01-104P13.g_246_302

seq1  CAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAATAGTCTGCG  50
      |||||||||||||| |||| ||||||||| ||||||||||||| ||||||
seq2  CAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCG  50

seq1  CATGTGC  57
      |||||||
seq2  CATGTGC  57