BAC Information

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BAC

Clone NameB6Ng01-105C15
Chromosome5 (Build37)16 (Build37)
Map Location 99,258,236 - 99,259,33143,725,162 - 43,725,384
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik, LOC100040738
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105C15.bB6Ng01-105C15.g
ACCDH913260DH913261
length1,081191
definitionDH913260|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C15, 5' end.DH913261|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,258,236 - 99,259,331)(43,725,162 - 43,725,384)
sequence
gaattcatagagttattgcagatttaacacattatttgagacttggtttg
tgttgattcacaagcaacctgaaaccttggctgagtcagatagctctctt
tattccacgttaagcacagactccctctggccggcttccacattcattag
ttactgtatcatctaaatgaccattgcaacagtgtttccctgtgcctacc
ttatagatatttgcatcacaatgtgtgatttctctaaggcaaagcaaagg
tagatttctcaaggatagtttgcctgtcttctttaacagcatttgaggca
ggatcttttatacatttgtaacttataaaaacaaccagattacaggtatt
tatttatttgttcagttatttgtttttttaagaaagcagtgagtcatgca
ctgcttctggtagagatttttataaggtaagttaaatttagatgcatcct
gtatcataacagaagtgtatttctgtaggataattatattaaaacagagt
tttgaaaggcaagggaatactacaagaataattagtttagcatgacatca
tgtgccacaagtacatacaaatttcatttatcaactaggaccaataaaaa
agacagtggaataacaacaaaaggaatgggtgagttggctggaaagtcat
ctcttgtgtcagccggaatgtgataaggggctatcactaaatagggaagg
ctgacttaagttcgtaagtaattttatttacaaaaaaatatcaggcaaat
gtcagatgggggttgaagcagccagggagacatgatatgcttacatctca
tgttcactccggtgattaatattcccaagtgacatcagtgttttatattt
gtattatgtaattttaaatcatcactggatttgattgatggatccttatg
ggatttgcagccagatacttaaagcaattagtatttcaactcctgttctg
gtgtgtttgtgcataacatcgttatacaccaatctttatctgaaaattca
attcttctttaaatgtcacttgactatgaggtaggctgtcatcaaaaact
aagaaaggggaaaataacatggggacttttt
tttggatcttttatgtacaatatcataccatctaaaatgggtataatttg
gcttctcctttccctattgtatccttttcattttctactttgtcttgttg
tagcttgttcttttaagcactctattgaaaaggagtggagcagcctttct
ttttttttttttttttttttggtttttcgagacagggtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99258236_99259331
seq2: B6Ng01-105C15.b_33_1113 (reverse)

seq1  AAAATGTCCCCAATGCTTATTTTCCCCATTTCTAGTTTTTGATGACAAGC  50
      |||| |||||| ||| ||||||||||| ||  |||||||||||||| |||
seq2  AAAAAGTCCCC-ATG-TTATTTTCCCCTTTCTTAGTTTTTGATGAC-AGC  47

seq1  CTACCTCTATGTTCAAGTGACATTTTAAAGGAAGACTTTGAATCTCAGAT  100
      ||||||| ||  |||||||||||||  || ||||| ||  | | ||||||
seq2  CTACCTC-ATAGTCAAGTGACATTT--AAAGAAGAATTGAATTTTCAGAT  94

seq1  AAAGATTGGCTGTTATAACCGATGTTATGGCACAAACACA-CAGAACAGT  149
      ||||||||| || ||||| ||||||||| ||||||||||| |||||||| 
seq2  AAAGATTGG-TG-TATAA-CGATGTTAT-GCACAAACACACCAGAACAG-  139

seq1  GAGGTTGAAATACTAAATTGCTTTTAAGTATCTGGCTGTCAAATTCCCAT  199
      || ||||||||||| |||||| |||||||||||||||| |||| ||||||
seq2  GA-GTTGAAATACT-AATTGC-TTTAAGTATCTGGCTG-CAAA-TCCCAT  184

seq1  AAGGATACAATCCACTCTAATCCAGTGATGATTTTAAAATTACATAATAC  249
      |||||| ||   || || ||||||||||||| ||||||||||||||||||
seq2  AAGGATCCA--TCAATCAAATCCAGTGATGA-TTTAAAATTACATAATAC  231

seq1  AAATCTTAAACACTGATGTCACTTGGGAATATTAAATCAACGGAGTGAAA  299
      |||| | |||||||||||||||||||||||||| ||||| ||||||| ||
seq2  AAATATAAAACACTGATGTCACTTGGGAATATT-AATCACCGGAGTG-AA  279

seq1  CATGAGATGTAAGCATATCATGTCTCCCTGGCTGCTTCAACCCCCATCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATGTAAGCATATCATGTCTCCCTGGCTGCTTCAACCCCCATCTG  329

seq1  ACATTTGCCTGATA-TTTTTTGTAA--TAAATTACTTACGAACTTAAGTC  396
      |||||||||||||| ||||||||||   ||||||||||||||||||||||
seq2  ACATTTGCCTGATATTTTTTTGTAAATAAAATTACTTACGAACTTAAGTC  379

seq1  AGCCTT-CCTATTTAGTGATAGCCCCTTATCACATTCCGGCTGACACAAG  445
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCCTATTTAGTGATAGCCCCTTATCACATTCCGGCTGACACAAG  429

seq1  AGATGAC-TTCCAGCCAACTCACCCATTCCTTTTGTTGTTATTCCACTGT  494
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTTTCCAGCCAACTCACCCATTCCTTTTGTTGTTATTCCACTGT  479

seq1  CTTTTTTATTGGTCCTAGTTGATAAATGAAATTTGTATGTACTTGTGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATTGGTCCTAGTTGATAAATGAAATTTGTATGTACTTGTGGCA  529

seq1  CATGATGTCATGCTAAACTAATTATTCTTGTAGTATTCCCTTGCCTTTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTCATGCTAAACTAATTATTCTTGTAGTATTCCCTTGCCTTTCA  579

seq1  AAACTCTGTTTTAATATAATTATCCTACAGAAATACACTTCTGTTATGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTTTTAATATAATTATCCTACAGAAATACACTTCTGTTATGAT  629

seq1  ACAGGATGCATCTAAATTTAACTTACCTTATAAAAATCTCTACCAGAAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGCATCTAAATTTAACTTACCTTATAAAAATCTCTACCAGAAGC  679

seq1  AGTGCATGACTCACTGCTTTCTTAAAAAAACAAATAACTGAACAAATAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGACTCACTGCTTTCTTAAAAAAACAAATAACTGAACAAATAAA  729

seq1  TAAATACCTGTAATCTGGTTGTTTTTATAAGTTACAAATGTATAAAAGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTGTAATCTGGTTGTTTTTATAAGTTACAAATGTATAAAAGAT  779

seq1  CCTGCCTCAAATGCTGTTAAAGAAGACAGGCAAACTATCCTTGAGAAATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCAAATGCTGTTAAAGAAGACAGGCAAACTATCCTTGAGAAATC  829

seq1  TACCTTTGCTTTGCCTTAGAGAAATCACACATTGTGATGCAAATATCTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGCTTTGCCTTAGAGAAATCACACATTGTGATGCAAATATCTAT  879

seq1  AAGGTAGGCACAGGGAAACACTGTTGCAATGGTCATTTAGATGATACAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGCACAGGGAAACACTGTTGCAATGGTCATTTAGATGATACAGT  929

seq1  AACTAATGAATGTGGAAGCCGGCCAGAGGGAGTCTGTGCTTAACGTGGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGAATGTGGAAGCCGGCCAGAGGGAGTCTGTGCTTAACGTGGAA  979

seq1  TAAAGAGAGCTATCTGACTCAGCCAAGGTTTCAGGTTGCTTGTGAATCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGCTATCTGACTCAGCCAAGGTTTCAGGTTGCTTGTGAATCAA  1029

seq1  CACAAACCAAGTCTCAAATAATTTCTTAAATCTGCAATAACTCTATGAAT  1094
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  CACAAACCAAGTCTCAAATAATGTGTTAAATCTGCAATAACTCTATGAAT  1079

seq1  TC  1096
      ||
seq2  TC  1081

seq1: chr16_43725162_43725384
seq2: B6Ng01-105C15.g_155_266

seq1  ATTTTCTACTTTGAAGCTAGAAAGAAGGTTCTAGAAAATGTTAAGAGGTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGTGATTATTTGAGAGTTTTTCAATTTATGCTGCTTAATGAGCAAAAG  100
               ||||   | ||| ||  ||  ||  ||||           |
seq2  ---------ATTTTCTACTTTGTC--TTGTTGTAGCTT-----------G  28

seq1  TTTACATTTGCAAGAAGTAAGACTTCATCAACTGTCTGCAAAAGACACCG  150
      ||  | |||  ||| | |             || | || ||| ||     
seq2  TT--CTTTT--AAGCACT-------------CTAT-TGAAAAGGA-----  55

seq1  GTAGGGCTGAAATCAACACTGCGTTCTTTTTTTTTTTTTTCTTTTTTTTT  200
      || | || |                | ||| ||||||||| |||||||||
seq2  GTGGAGCAG----------------CCTTTCTTTTTTTTTTTTTTTTTTT  89

seq1  TTGGTTTTTCGAGACAGGGTTTC  223
      |||||||||||||||||||||||
seq2  TTGGTTTTTCGAGACAGGGTTTC  112